data_7LH8 # _model_server_result.job_id 2e5TIC8rHEBY7g1t7GVNdQ _model_server_result.datetime_utc '2024-11-22 00:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7LH8 # _exptl.entry_id 7LH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 570.639 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(5R)-1-ethyl-5-(4-methylphenyl)-7-({1-[(4-nitrophenyl)methyl]piperidin-4-yl}methyl)-5,7,8,9-tetrahydro-1H-pyrrolo[3',4':5,6]pyrido[2,3-d]pyrimidine-2,4,6(3H)-trione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LH8 _cell.length_a 44.88 _cell.length_b 49.43 _cell.length_c 53.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG1 _struct_conn.ptnr1_label_comp_id THR _struct_conn.ptnr1_label_seq_id 19 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id THR _struct_conn.ptnr1_auth_seq_id 60 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 208 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.081 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C31 H34 N6 O5' _chem_comp.formula_weight 570.639 _chem_comp.id XZG _chem_comp.mon_nstd_flag . _chem_comp.name "(5R)-1-ethyl-5-(4-methylphenyl)-7-({1-[(4-nitrophenyl)methyl]piperidin-4-yl}methyl)-5,7,8,9-tetrahydro-1H-pyrrolo[3',4':5,6]pyrido[2,3-d]pyrimidine-2,4,6(3H)-trione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 XZG sing 385 n n C02 N03 XZG sing 386 n n O42 C41 XZG doub 387 n n N03 C41 XZG sing 388 n n N03 C04 XZG sing 389 n n C41 N40 XZG sing 390 n n N05 C04 XZG sing 391 n n N05 C06 XZG sing 392 n n C04 C37 XZG doub 393 n n C28 C06 XZG sing 394 n n C28 N10 XZG sing 395 n n C06 C07 XZG doub 396 n n N40 C38 XZG sing 397 n n C37 C38 XZG sing 398 n n C37 C29 XZG sing 399 n n C38 O39 XZG doub 400 n n C07 C29 XZG sing 401 n n C07 C08 XZG sing 402 n n N10 C11 XZG sing 403 n n N10 C08 XZG sing 404 n n C11 C12 XZG sing 405 n n C29 C30 XZG sing 406 n n C08 O09 XZG doub 407 n n C31 C30 XZG doub 408 n y C31 C32 XZG sing 409 n y C30 C36 XZG sing 410 n y C12 C13 XZG sing 411 n n C12 C27 XZG sing 412 n n C13 C14 XZG sing 413 n n C32 C33 XZG doub 414 n y C27 C26 XZG sing 415 n n C14 N15 XZG sing 416 n n C36 C35 XZG doub 417 n y C33 C35 XZG sing 418 n y C33 C34 XZG sing 419 n n C26 N15 XZG sing 420 n n N15 C16 XZG sing 421 n n C25 C24 XZG doub 422 n y C25 C17 XZG sing 423 n y C16 C17 XZG sing 424 n n C24 C20 XZG sing 425 n y C17 C18 XZG doub 426 n y O22 N21 XZG sing 427 n n C20 N21 XZG sing 428 n n C20 C19 XZG doub 429 n y C18 C19 XZG sing 430 n y N21 O23 XZG doub 431 n n C13 H1 XZG sing 432 n n C13 H2 XZG sing 433 n n C24 H3 XZG sing 434 n n C26 H4 XZG sing 435 n n C26 H5 XZG sing 436 n n C28 H6 XZG sing 437 n n C28 H7 XZG sing 438 n n C01 H8 XZG sing 439 n n C01 H9 XZG sing 440 n n C01 H10 XZG sing 441 n n C02 H11 XZG sing 442 n n C02 H12 XZG sing 443 n n C11 H13 XZG sing 444 n n C11 H14 XZG sing 445 n n C12 H15 XZG sing 446 n n C14 H16 XZG sing 447 n n C14 H17 XZG sing 448 n n C16 H18 XZG sing 449 n n C16 H19 XZG sing 450 n n C18 H20 XZG sing 451 n n C19 H21 XZG sing 452 n n C25 H22 XZG sing 453 n n C27 H23 XZG sing 454 n n C27 H24 XZG sing 455 n n C31 H25 XZG sing 456 n n C32 H26 XZG sing 457 n n C34 H27 XZG sing 458 n n C34 H28 XZG sing 459 n n C34 H29 XZG sing 460 n n C35 H30 XZG sing 461 n n C36 H31 XZG sing 462 n n N40 H33 XZG sing 463 n n C29 H34 XZG sing 464 n n N05 H35 XZG sing 465 n n # _atom_sites.entry_id 7LH8 _atom_sites.fract_transf_matrix[1][1] 0.022282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XZG A 1 201 1 XZG LIG . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 3 EDO A 1 205 4 EDO EDO . G 3 EDO A 1 206 5 EDO EDO . H 3 EDO A 1 207 6 EDO EDO . I 4 NA A 1 208 1 NA NA . J 5 HOH A 1 301 19 HOH HOH . J 5 HOH A 2 302 63 HOH HOH . J 5 HOH A 3 303 49 HOH HOH . J 5 HOH A 4 304 45 HOH HOH . J 5 HOH A 5 305 73 HOH HOH . J 5 HOH A 6 306 61 HOH HOH . J 5 HOH A 7 307 71 HOH HOH . J 5 HOH A 8 308 52 HOH HOH . J 5 HOH A 9 309 13 HOH HOH . J 5 HOH A 10 310 3 HOH HOH . J 5 HOH A 11 311 6 HOH HOH . J 5 HOH A 12 312 92 HOH HOH . J 5 HOH A 13 313 79 HOH HOH . J 5 HOH A 14 314 20 HOH HOH . J 5 HOH A 15 315 8 HOH HOH . J 5 HOH A 16 316 25 HOH HOH . J 5 HOH A 17 317 26 HOH HOH . J 5 HOH A 18 318 12 HOH HOH . J 5 HOH A 19 319 5 HOH HOH . J 5 HOH A 20 320 7 HOH HOH . J 5 HOH A 21 321 39 HOH HOH . J 5 HOH A 22 322 54 HOH HOH . J 5 HOH A 23 323 16 HOH HOH . J 5 HOH A 24 324 9 HOH HOH . J 5 HOH A 25 325 69 HOH HOH . J 5 HOH A 26 326 33 HOH HOH . J 5 HOH A 27 327 80 HOH HOH . J 5 HOH A 28 328 4 HOH HOH . J 5 HOH A 29 329 32 HOH HOH . J 5 HOH A 30 330 18 HOH HOH . J 5 HOH A 31 331 81 HOH HOH . J 5 HOH A 32 332 78 HOH HOH . J 5 HOH A 33 333 17 HOH HOH . J 5 HOH A 34 334 30 HOH HOH . J 5 HOH A 35 335 90 HOH HOH . J 5 HOH A 36 336 53 HOH HOH . J 5 HOH A 37 337 14 HOH HOH . J 5 HOH A 38 338 77 HOH HOH . J 5 HOH A 39 339 43 HOH HOH . J 5 HOH A 40 340 94 HOH HOH . J 5 HOH A 41 341 34 HOH HOH . J 5 HOH A 42 342 28 HOH HOH . J 5 HOH A 43 343 85 HOH HOH . J 5 HOH A 44 344 29 HOH HOH . J 5 HOH A 45 345 27 HOH HOH . J 5 HOH A 46 346 93 HOH HOH . J 5 HOH A 47 347 22 HOH HOH . J 5 HOH A 48 348 24 HOH HOH . J 5 HOH A 49 349 57 HOH HOH . J 5 HOH A 50 350 72 HOH HOH . J 5 HOH A 51 351 68 HOH HOH . J 5 HOH A 52 352 40 HOH HOH . J 5 HOH A 53 353 38 HOH HOH . J 5 HOH A 54 354 11 HOH HOH . J 5 HOH A 55 355 31 HOH HOH . J 5 HOH A 56 356 23 HOH HOH . J 5 HOH A 57 357 91 HOH HOH . J 5 HOH A 58 358 86 HOH HOH . J 5 HOH A 59 359 2 HOH HOH . J 5 HOH A 60 360 58 HOH HOH . J 5 HOH A 61 361 21 HOH HOH . J 5 HOH A 62 362 76 HOH HOH . J 5 HOH A 63 363 62 HOH HOH . J 5 HOH A 64 364 89 HOH HOH . J 5 HOH A 65 365 88 HOH HOH . J 5 HOH A 66 366 83 HOH HOH . J 5 HOH A 67 367 66 HOH HOH . J 5 HOH A 68 368 87 HOH HOH . J 5 HOH A 69 369 84 HOH HOH . J 5 HOH A 70 370 48 HOH HOH . J 5 HOH A 71 371 44 HOH HOH . J 5 HOH A 72 372 82 HOH HOH . J 5 HOH A 73 373 60 HOH HOH . J 5 HOH A 74 374 36 HOH HOH . J 5 HOH A 75 375 74 HOH HOH . J 5 HOH A 76 376 56 HOH HOH . J 5 HOH A 77 377 46 HOH HOH . J 5 HOH A 78 378 64 HOH HOH . J 5 HOH A 79 379 65 HOH HOH . J 5 HOH A 80 380 41 HOH HOH . J 5 HOH A 81 381 50 HOH HOH . J 5 HOH A 82 382 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 XZG . . . B 2 -21.209 5.91 -1.93 1 61.6 ? C13 XZG 201 A 1 HETATM 2 C C17 XZG . . . B 2 -23.015 4.58 1.617 1 53.34 ? C17 XZG 201 A 1 HETATM 3 C C20 XZG . . . B 2 -24.581 2.283 2.033 1 47.44 ? C20 XZG 201 A 1 HETATM 4 C C24 XZG . . . B 2 -25.166 3.433 1.503 1 50.2 ? C24 XZG 201 A 1 HETATM 5 C C26 XZG . . . B 2 -20.08 6.22 0.399 1 56.54 ? C26 XZG 201 A 1 HETATM 6 C C28 XZG . . . B 2 -17.503 6.688 -4.976 1 37.15 ? C28 XZG 201 A 1 HETATM 7 C C01 XZG . . . B 2 -13.414 10.182 -7.603 1 18 ? C01 XZG 201 A 1 HETATM 8 C C02 XZG . . . B 2 -14.855 10.722 -7.584 1 15.1 ? C02 XZG 201 A 1 HETATM 9 C C04 XZG . . . B 2 -15.948 10.399 -5.408 1 23.94 ? C04 XZG 201 A 1 HETATM 10 C C06 XZG . . . B 2 -17.012 8.163 -4.944 1 31.93 ? C06 XZG 201 A 1 HETATM 11 C C07 XZG . . . B 2 -17.646 8.789 -3.792 1 26.29 ? C07 XZG 201 A 1 HETATM 12 C C08 XZG . . . B 2 -18.497 7.818 -3.077 1 51.81 ? C08 XZG 201 A 1 HETATM 13 C C11 XZG . . . B 2 -19.175 5.343 -3.34 1 65.81 ? C11 XZG 201 A 1 HETATM 14 C C12 XZG . . . B 2 -19.882 5.33 -1.93 1 62.01 ? C12 XZG 201 A 1 HETATM 15 C C14 XZG . . . B 2 -21.986 5.273 -0.77 1 44.36 ? C14 XZG 201 A 1 HETATM 16 C C16 XZG . . . B 2 -22.088 5.792 1.383 1 40.84 ? C16 XZG 201 A 1 HETATM 17 C C18 XZG . . . B 2 -22.454 3.432 2.153 1 52.37 ? C18 XZG 201 A 1 HETATM 18 C C19 XZG . . . B 2 -23.232 2.302 2.357 1 57.18 ? C19 XZG 201 A 1 HETATM 19 C C25 XZG . . . B 2 -24.381 4.575 1.294 1 50.92 ? C25 XZG 201 A 1 HETATM 20 C C27 XZG . . . B 2 -19.146 5.836 -0.78 1 48.21 ? C27 XZG 201 A 1 HETATM 21 C C29 XZG . . . B 2 -17.212 10.09 -3.186 1 28.6 ? C29 XZG 201 A 1 HETATM 22 C C30 XZG . . . B 2 -16.367 9.652 -2.001 1 31.22 ? C30 XZG 201 A 1 HETATM 23 C C31 XZG . . . B 2 -15.471 8.597 -2.14 1 38.95 ? C31 XZG 201 A 1 HETATM 24 C C32 XZG . . . B 2 -14.725 8.179 -1.04 1 47.44 ? C32 XZG 201 A 1 HETATM 25 C C33 XZG . . . B 2 -14.87 8.806 0.193 1 49.72 ? C33 XZG 201 A 1 HETATM 26 C C34 XZG . . . B 2 -14.049 8.337 1.386 1 43.47 ? C34 XZG 201 A 1 HETATM 27 C C35 XZG . . . B 2 -15.766 9.859 0.336 1 44.12 ? C35 XZG 201 A 1 HETATM 28 C C36 XZG . . . B 2 -16.525 10.264 -0.759 1 52.26 ? C36 XZG 201 A 1 HETATM 29 C C37 XZG . . . B 2 -16.466 10.938 -4.241 1 20.43 ? C37 XZG 201 A 1 HETATM 30 C C38 XZG . . . B 2 -16.211 12.282 -3.927 1 25.28 ? C38 XZG 201 A 1 HETATM 31 C C41 XZG . . . B 2 -15.118 12.54 -5.987 1 19.15 ? C41 XZG 201 A 1 HETATM 32 N N03 XZG . . . B 2 -15.318 11.237 -6.294 1 17.53 ? N03 XZG 201 A 1 HETATM 33 N N05 XZG . . . B 2 -16.151 8.981 -5.793 1 20.94 ? N05 XZG 201 A 1 HETATM 34 N N10 XZG . . . B 2 -18.422 6.54 -3.79 1 36.98 ? N10 XZG 201 A 1 HETATM 35 N N15 XZG . . . B 2 -21.316 5.444 0.504 1 48.76 ? N15 XZG 201 A 1 HETATM 36 N N21 XZG . . . B 2 -25.312 1.051 2.308 1 59.88 ? N21 XZG 201 A 1 HETATM 37 N N40 XZG . . . B 2 -15.551 13.033 -4.814 1 17.08 ? N40 XZG 201 A 1 HETATM 38 O O09 XZG . . . B 2 -19.098 8.109 -2.097 1 52.66 ? O09 XZG 201 A 1 HETATM 39 O O22 XZG . . . B 2 -26.375 0.8 1.825 1 48.36 ? O22 XZG 201 A 1 HETATM 40 O O23 XZG . . . B 2 -24.817 0.269 3.05 1 66.15 ? O23 XZG 201 A 1 HETATM 41 O O39 XZG . . . B 2 -16.598 12.748 -2.883 1 27.04 ? O39 XZG 201 A 1 HETATM 42 O O42 XZG . . . B 2 -14.53 13.273 -6.733 1 14.91 ? O42 XZG 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #