data_7LHF # _model_server_result.job_id Kx5-bptg45IduKjeyKULPQ _model_server_result.datetime_utc '2025-02-28 18:32:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":5104}' # _entry.id 7LHF # _exptl.entry_id 7LHF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 28 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LHF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 2606 A CYS 2611 1_555 L ZN ZN . A ZN 2808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc2 A NE2 HIS 2626 A HIS 2631 1_555 L ZN ZN . A ZN 2808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A ND1 HIS 2631 A HIS 2636 1_555 L ZN ZN . A ZN 2808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 B SG CYS 2606 D CYS 2611 1_555 M ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc5 B NE2 HIS 2626 D HIS 2631 1_555 M ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc6 B ND1 HIS 2631 D HIS 2636 1_555 M ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 C SG CYS 2606 B CYS 2611 1_555 BA ZN ZN . B ZN 2808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 C NE2 HIS 2626 B HIS 2631 1_555 BA ZN ZN . B ZN 2808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 C ND1 HIS 2631 B HIS 2636 1_555 BA ZN ZN . B ZN 2808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc10 D SG CYS 2606 C CYS 2611 1_555 CA ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc11 D NE2 HIS 2626 C HIS 2631 1_555 CA ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc12 D ND1 HIS 2631 C HIS 2636 1_555 CA ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 PLX sing 258 n n C23 H231 PLX sing 259 n n C23 H232 PLX sing 260 n n C23 H233 PLX sing 261 n n C22 C21 PLX sing 262 n n C22 H221 PLX sing 263 n n C22 H222 PLX sing 264 n n C21 C20 PLX sing 265 n n C21 H211 PLX sing 266 n n C21 H212 PLX sing 267 n n C20 C19 PLX sing 268 n n C20 H201 PLX sing 269 n n C20 H202 PLX sing 270 n n C19 C18 PLX sing 271 n n C19 H191 PLX sing 272 n n C19 H192 PLX sing 273 n n C18 C17 PLX sing 274 n n C18 H181 PLX sing 275 n n C18 H182 PLX sing 276 n n C17 C16 PLX sing 277 n n C17 H171 PLX sing 278 n n C17 H172 PLX sing 279 n n C16 C15 PLX sing 280 n n C16 H161 PLX sing 281 n n C16 H162 PLX sing 282 n n C15 C14 PLX sing 283 n n C15 H151 PLX sing 284 n n C15 H152 PLX sing 285 n n C14 C13 PLX sing 286 n n C14 H141 PLX sing 287 n n C14 H142 PLX sing 288 n n C13 C12 PLX sing 289 n n C13 H131 PLX sing 290 n n C13 H132 PLX sing 291 n n C12 C11 PLX sing 292 n n C12 H121 PLX sing 293 n n C12 H122 PLX sing 294 n n C11 C10 PLX sing 295 n n C11 H111 PLX sing 296 n n C11 H112 PLX sing 297 n n C10 C9 PLX sing 298 n n C10 H101 PLX sing 299 n n C10 H102 PLX sing 300 n n C9 C8 PLX sing 301 n n C9 H91 PLX sing 302 n n C9 H92 PLX sing 303 n n C8 C7 PLX sing 304 n n C8 H81 PLX sing 305 n n C8 H82 PLX sing 306 n n C7 C6 PLX sing 307 n n C7 H71 PLX sing 308 n n C7 H72 PLX sing 309 n n C6 O7 PLX sing 310 n n C6 O6 PLX sing 311 n n C6 H6 PLX sing 312 n n O7 HO7 PLX sing 313 n n O6 C4 PLX sing 314 n n C4 C3 PLX sing 315 n n C4 C5 PLX sing 316 n n C4 H4 PLX sing 317 n n C3 O4 PLX sing 318 n n C3 H31 PLX sing 319 n n C3 H32 PLX sing 320 n n O4 P1 PLX sing 321 n n P1 O1 PLX sing 322 n n P1 O2 PLX doub 323 n n P1 O3 PLX sing 324 n n O1 C2 PLX sing 325 n n C2 C1 PLX sing 326 n n C2 H21 PLX sing 327 n n C2 H22 PLX sing 328 n n C1 N1 PLX sing 329 n n C1 H11 PLX sing 330 n n C1 H12 PLX sing 331 n n N1 C1C PLX sing 332 n n N1 C1B PLX sing 333 n n N1 C1A PLX sing 334 n n C1C H1C1 PLX sing 335 n n C1C H1C2 PLX sing 336 n n C1C H1C3 PLX sing 337 n n C1B H1B1 PLX sing 338 n n C1B H1B2 PLX sing 339 n n C1B H1B3 PLX sing 340 n n C1A H1A1 PLX sing 341 n n C1A H1A2 PLX sing 342 n n C1A H1A3 PLX sing 343 n n C5 O8 PLX sing 344 n n C5 H51 PLX sing 345 n n C5 H52 PLX sing 346 n n O8 C24 PLX sing 347 n n C24 O9 PLX sing 348 n n C24 C25 PLX sing 349 n n C24 H24 PLX sing 350 n n O9 HO9 PLX sing 351 n n C25 C26 PLX sing 352 n n C25 H251 PLX sing 353 n n C25 H252 PLX sing 354 n n C26 C27 PLX sing 355 n n C26 H261 PLX sing 356 n n C26 H262 PLX sing 357 n n C27 C28 PLX sing 358 n n C27 H271 PLX sing 359 n n C27 H272 PLX sing 360 n n C28 C29 PLX sing 361 n n C28 H281 PLX sing 362 n n C28 H282 PLX sing 363 n n C29 C30 PLX sing 364 n n C29 H291 PLX sing 365 n n C29 H292 PLX sing 366 n n C30 C31 PLX sing 367 n n C30 H301 PLX sing 368 n n C30 H302 PLX sing 369 n n C31 C32 PLX sing 370 n n C31 H311 PLX sing 371 n n C31 H312 PLX sing 372 n n C32 C33 PLX sing 373 n n C32 H321 PLX sing 374 n n C32 H322 PLX sing 375 n n C33 C34 PLX sing 376 n n C33 H331 PLX sing 377 n n C33 H332 PLX sing 378 n n C34 C35 PLX sing 379 n n C34 H341 PLX sing 380 n n C34 H342 PLX sing 381 n n C35 C36 PLX sing 382 n n C35 H351 PLX sing 383 n n C35 H352 PLX sing 384 n n C36 C37 PLX sing 385 n n C36 H361 PLX sing 386 n n C36 H362 PLX sing 387 n n C37 C38 PLX sing 388 n n C37 H371 PLX sing 389 n n C37 H372 PLX sing 390 n n C38 C39 PLX sing 391 n n C38 H381 PLX sing 392 n n C38 H382 PLX sing 393 n n C39 H391 PLX sing 394 n n C39 H392 PLX sing 395 n n C39 H393 PLX sing 396 n n O3 HO3 PLX sing 397 n n # _atom_sites.entry_id 7LHF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLX A 1 2801 2004 PLX LBN . F 2 PLX A 1 2802 2005 PLX LBN . G 2 PLX A 1 2803 2007 PLX LBN . H 2 PLX A 1 2804 2001 PLX LBN . I 2 PLX A 1 2805 2002 PLX LBN . J 2 PLX A 1 2806 2003 PLX LBN . K 2 PLX A 1 2807 2006 PLX LBN . L 3 ZN A 1 2808 5101 ZN ZN . M 3 ZN D 1 5101 5101 ZN ZN . N 2 PLX D 1 5102 2004 PLX LBN . O 2 PLX D 1 5103 2005 PLX LBN . P 2 PLX D 1 5104 2007 PLX LBN . Q 2 PLX D 1 5105 2001 PLX LBN . R 2 PLX D 1 5106 2002 PLX LBN . S 2 PLX D 1 5107 2003 PLX LBN . T 2 PLX D 1 5108 2006 PLX LBN . U 2 PLX B 1 2801 2001 PLX LBN . V 2 PLX B 1 2802 2002 PLX LBN . W 2 PLX B 1 2803 2003 PLX LBN . X 2 PLX B 1 2804 2006 PLX LBN . Y 2 PLX B 1 2805 2004 PLX LBN . Z 2 PLX B 1 2806 2005 PLX LBN . AA 2 PLX B 1 2807 2007 PLX LBN . BA 3 ZN B 1 2808 5101 ZN ZN . CA 3 ZN C 1 5101 5101 ZN ZN . DA 2 PLX C 1 5102 2001 PLX LBN . EA 2 PLX C 1 5103 2002 PLX LBN . FA 2 PLX C 1 5104 2003 PLX LBN . GA 2 PLX C 1 5105 2006 PLX LBN . HA 2 PLX C 1 5106 2004 PLX LBN . IA 2 PLX C 1 5107 2005 PLX LBN . JA 2 PLX C 1 5108 2007 PLX LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 PLX . . . P 2 248.905 257.318 316.921 1 60.61 ? C16 PLX 5104 D 1 HETATM 2 C C15 PLX . . . P 2 247.812 258.325 317.35 1 60.61 ? C15 PLX 5104 D 1 HETATM 3 C C14 PLX . . . P 2 247 258.878 316.153 1 60.61 ? C14 PLX 5104 D 1 HETATM 4 C C13 PLX . . . P 2 247.898 259.308 314.97 1 60.61 ? C13 PLX 5104 D 1 HETATM 5 C C12 PLX . . . P 2 247.118 259.389 313.635 1 60.61 ? C12 PLX 5104 D 1 HETATM 6 C C11 PLX . . . P 2 247.807 258.576 312.505 1 60.61 ? C11 PLX 5104 D 1 HETATM 7 C C10 PLX . . . P 2 248.358 259.467 311.358 1 60.61 ? C10 PLX 5104 D 1 HETATM 8 C C9 PLX . . . P 2 248.061 258.855 309.959 1 60.61 ? C9 PLX 5104 D 1 HETATM 9 C C8 PLX . . . P 2 249.163 259.164 308.91 1 60.61 ? C8 PLX 5104 D 1 HETATM 10 C C7 PLX . . . P 2 249.101 258.206 307.691 1 60.61 ? C7 PLX 5104 D 1 HETATM 11 C C6 PLX . . . P 2 250.422 258.177 306.884 1 60.61 ? C6 PLX 5104 D 1 HETATM 12 O O7 PLX . . . P 2 251.446 257.966 307.446 1 60.61 ? O7 PLX 5104 D 1 HETATM 13 O O6 PLX . . . P 2 250.402 258.398 305.48 1 60.61 ? O6 PLX 5104 D 1 HETATM 14 C C4 PLX . . . P 2 251.32 257.628 304.755 1 60.61 ? C4 PLX 5104 D 1 HETATM 15 C C3 PLX . . . P 2 251.383 258.114 303.296 1 60.61 ? C3 PLX 5104 D 1 HETATM 16 O O4 PLX . . . P 2 251.957 259.414 303.286 1 60.61 ? O4 PLX 5104 D 1 HETATM 17 P P1 PLX . . . P 2 253.116 259.791 302.146 1 60.61 ? P1 PLX 5104 D 1 HETATM 18 O O1 PLX . . . P 2 252.787 261.281 301.48 1 60.61 ? O1 PLX 5104 D 1 HETATM 19 C C2 PLX . . . P 2 251.962 261.346 300.325 1 60.61 ? C2 PLX 5104 D 1 HETATM 20 C C1 PLX . . . P 2 250.963 262.527 300.49 1 60.61 ? C1 PLX 5104 D 1 HETATM 21 N N1 PLX . . . P 2 251.085 263.548 299.401 1 60.61 ? N1 PLX 5104 D 1 HETATM 22 C C1C PLX . . . P 2 250.711 262.876 298.125 1 60.61 ? C1C PLX 5104 D 1 HETATM 23 C C1B PLX . . . P 2 250.328 264.754 299.842 1 60.61 ? C1B PLX 5104 D 1 HETATM 24 C C1A PLX . . . P 2 252.486 264.004 299.24 1 60.61 ? C1A PLX 5104 D 1 HETATM 25 O O2 PLX . . . P 2 254.473 259.845 302.809 1 60.61 ? O2 PLX 5104 D 1 HETATM 26 C C5 PLX . . . P 2 250.893 256.155 304.793 1 60.61 ? C5 PLX 5104 D 1 HETATM 27 O O8 PLX . . . P 2 251.847 255.435 305.555 1 60.61 ? O8 PLX 5104 D 1 HETATM 28 C C24 PLX . . . P 2 252.608 254.501 304.808 1 60.61 ? C24 PLX 5104 D 1 HETATM 29 O O9 PLX . . . P 2 252.592 254.528 303.619 1 60.61 ? O9 PLX 5104 D 1 HETATM 30 C C25 PLX . . . P 2 253.465 253.447 305.538 1 60.61 ? C25 PLX 5104 D 1 HETATM 31 C C26 PLX . . . P 2 253.654 253.765 307.041 1 60.61 ? C26 PLX 5104 D 1 HETATM 32 C C27 PLX . . . P 2 253.161 252.613 307.947 1 60.61 ? C27 PLX 5104 D 1 HETATM 33 C C28 PLX . . . P 2 251.724 252.854 308.473 1 60.61 ? C28 PLX 5104 D 1 HETATM 34 C C29 PLX . . . P 2 251.513 252.273 309.893 1 60.61 ? C29 PLX 5104 D 1 HETATM 35 C C30 PLX . . . P 2 250.129 251.598 310.054 1 60.61 ? C30 PLX 5104 D 1 HETATM 36 C C31 PLX . . . P 2 250.119 250.526 311.172 1 60.61 ? C31 PLX 5104 D 1 HETATM 37 C C32 PLX . . . P 2 248.933 250.709 312.15 1 60.61 ? C32 PLX 5104 D 1 HETATM 38 C C33 PLX . . . P 2 248.501 249.378 312.811 1 60.61 ? C33 PLX 5104 D 1 HETATM 39 C C34 PLX . . . P 2 247.23 249.528 313.676 1 60.61 ? C34 PLX 5104 D 1 HETATM 40 O O3 PLX . . . P 2 253.135 258.731 301.071 1 60.61 ? O3 PLX 5104 D 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 86 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 40 #