data_7LHM # _model_server_result.job_id Svv8HPms88EXfUvUO7iZiA _model_server_result.datetime_utc '2024-11-15 03:11:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7LHM # _exptl.entry_id 7LHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.81 _cell.angle_beta 93.4 _cell.angle_gamma 115.9 _cell.entry_id 7LHM _cell.length_a 30.979 _cell.length_b 36.479 _cell.length_c 63.896 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 108 A LYS 108 1_555 D C15 RET . A RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.207 ? covale ? covale2 B NZ LYS 108 B LYS 108 1_555 G C15 RET . B RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.069 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 279 n n C1 C6 RET sing 280 n n C1 C16 RET sing 281 n n C1 C17 RET sing 282 n n C2 C3 RET sing 283 n n C2 H21 RET sing 284 n n C2 H22 RET sing 285 n n C3 C4 RET sing 286 n n C3 H31 RET sing 287 n n C3 H32 RET sing 288 n n C4 C5 RET sing 289 n n C4 H41 RET sing 290 n n C4 H42 RET sing 291 n n C5 C6 RET doub 292 n n C5 C18 RET sing 293 n n C6 C7 RET sing 294 n n C7 C8 RET doub 295 e n C7 H7 RET sing 296 n n C8 C9 RET sing 297 n n C8 H8 RET sing 298 n n C9 C10 RET doub 299 e n C9 C19 RET sing 300 n n C10 C11 RET sing 301 n n C10 H10 RET sing 302 n n C11 C12 RET doub 303 e n C11 H11 RET sing 304 n n C12 C13 RET sing 305 n n C12 H12 RET sing 306 n n C13 C14 RET doub 307 e n C13 C20 RET sing 308 n n C14 C15 RET sing 309 n n C14 H14 RET sing 310 n n C15 O1 RET doub 311 n n C15 H15 RET sing 312 n n C16 H161 RET sing 313 n n C16 H162 RET sing 314 n n C16 H163 RET sing 315 n n C17 H171 RET sing 316 n n C17 H172 RET sing 317 n n C17 H173 RET sing 318 n n C18 H181 RET sing 319 n n C18 H182 RET sing 320 n n C18 H183 RET sing 321 n n C19 H191 RET sing 322 n n C19 H192 RET sing 323 n n C19 H193 RET sing 324 n n C20 H201 RET sing 325 n n C20 H202 RET sing 326 n n C20 H203 RET sing 327 n n # _atom_sites.entry_id 7LHM _atom_sites.fract_transf_matrix[1][1] 0.03228 _atom_sites.fract_transf_matrix[1][2] 0.015678 _atom_sites.fract_transf_matrix[1][3] 0.002621 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030475 _atom_sites.fract_transf_matrix[2][3] 0.001362 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 201 4 ACT ACT . D 3 RET A 1 202 1 RET RET . E 4 GOL A 1 203 2 GOL GOL . F 2 ACT B 1 201 1 ACT ACT . G 3 RET B 1 202 2 RET RET . H 4 GOL B 1 203 1 GOL GOL . I 5 HOH A 1 301 71 HOH HOH . I 5 HOH A 2 302 79 HOH HOH . I 5 HOH A 3 303 56 HOH HOH . I 5 HOH A 4 304 54 HOH HOH . I 5 HOH A 5 305 159 HOH HOH . I 5 HOH A 6 306 31 HOH HOH . I 5 HOH A 7 307 59 HOH HOH . I 5 HOH A 8 308 44 HOH HOH . I 5 HOH A 9 309 112 HOH HOH . I 5 HOH A 10 310 120 HOH HOH . I 5 HOH A 11 311 5 HOH HOH . I 5 HOH A 12 312 39 HOH HOH . I 5 HOH A 13 313 48 HOH HOH . I 5 HOH A 14 314 122 HOH HOH . I 5 HOH A 15 315 83 HOH HOH . I 5 HOH A 16 316 60 HOH HOH . I 5 HOH A 17 317 26 HOH HOH . I 5 HOH A 18 318 13 HOH HOH . I 5 HOH A 19 319 161 HOH HOH . I 5 HOH A 20 320 14 HOH HOH . I 5 HOH A 21 321 128 HOH HOH . I 5 HOH A 22 322 1 HOH HOH . I 5 HOH A 23 323 20 HOH HOH . I 5 HOH A 24 324 138 HOH HOH . I 5 HOH A 25 325 102 HOH HOH . I 5 HOH A 26 326 136 HOH HOH . I 5 HOH A 27 327 162 HOH HOH . I 5 HOH A 28 328 9 HOH HOH . I 5 HOH A 29 329 49 HOH HOH . I 5 HOH A 30 330 50 HOH HOH . I 5 HOH A 31 331 21 HOH HOH . I 5 HOH A 32 332 80 HOH HOH . I 5 HOH A 33 333 38 HOH HOH . I 5 HOH A 34 334 34 HOH HOH . I 5 HOH A 35 335 47 HOH HOH . I 5 HOH A 36 336 116 HOH HOH . I 5 HOH A 37 337 42 HOH HOH . I 5 HOH A 38 338 25 HOH HOH . I 5 HOH A 39 339 127 HOH HOH . I 5 HOH A 40 340 55 HOH HOH . I 5 HOH A 41 341 124 HOH HOH . I 5 HOH A 42 342 3 HOH HOH . I 5 HOH A 43 343 81 HOH HOH . I 5 HOH A 44 344 146 HOH HOH . I 5 HOH A 45 345 6 HOH HOH . I 5 HOH A 46 346 36 HOH HOH . I 5 HOH A 47 347 145 HOH HOH . I 5 HOH A 48 348 141 HOH HOH . I 5 HOH A 49 349 78 HOH HOH . I 5 HOH A 50 350 158 HOH HOH . I 5 HOH A 51 351 62 HOH HOH . I 5 HOH A 52 352 24 HOH HOH . I 5 HOH A 53 353 96 HOH HOH . I 5 HOH A 54 354 58 HOH HOH . I 5 HOH A 55 355 51 HOH HOH . I 5 HOH A 56 356 33 HOH HOH . I 5 HOH A 57 357 168 HOH HOH . I 5 HOH A 58 358 29 HOH HOH . I 5 HOH A 59 359 84 HOH HOH . I 5 HOH A 60 360 76 HOH HOH . I 5 HOH A 61 361 74 HOH HOH . I 5 HOH A 62 362 144 HOH HOH . I 5 HOH A 63 363 63 HOH HOH . I 5 HOH A 64 364 126 HOH HOH . I 5 HOH A 65 365 153 HOH HOH . I 5 HOH A 66 366 133 HOH HOH . I 5 HOH A 67 367 118 HOH HOH . I 5 HOH A 68 368 173 HOH HOH . I 5 HOH A 69 369 137 HOH HOH . I 5 HOH A 70 370 151 HOH HOH . I 5 HOH A 71 371 142 HOH HOH . I 5 HOH A 72 372 119 HOH HOH . I 5 HOH A 73 373 86 HOH HOH . I 5 HOH A 74 374 104 HOH HOH . I 5 HOH A 75 375 87 HOH HOH . I 5 HOH A 76 376 176 HOH HOH . I 5 HOH A 77 377 23 HOH HOH . I 5 HOH A 78 378 174 HOH HOH . I 5 HOH A 79 379 100 HOH HOH . I 5 HOH A 80 380 75 HOH HOH . I 5 HOH A 81 381 92 HOH HOH . J 5 HOH B 1 301 37 HOH HOH . J 5 HOH B 2 302 68 HOH HOH . J 5 HOH B 3 303 105 HOH HOH . J 5 HOH B 4 304 163 HOH HOH . J 5 HOH B 5 305 111 HOH HOH . J 5 HOH B 6 306 121 HOH HOH . J 5 HOH B 7 307 64 HOH HOH . J 5 HOH B 8 308 110 HOH HOH . J 5 HOH B 9 309 67 HOH HOH . J 5 HOH B 10 310 134 HOH HOH . J 5 HOH B 11 311 155 HOH HOH . J 5 HOH B 12 312 41 HOH HOH . J 5 HOH B 13 313 109 HOH HOH . J 5 HOH B 14 314 150 HOH HOH . J 5 HOH B 15 315 61 HOH HOH . J 5 HOH B 16 316 57 HOH HOH . J 5 HOH B 17 317 97 HOH HOH . J 5 HOH B 18 318 30 HOH HOH . J 5 HOH B 19 319 73 HOH HOH . J 5 HOH B 20 320 167 HOH HOH . J 5 HOH B 21 321 11 HOH HOH . J 5 HOH B 22 322 98 HOH HOH . J 5 HOH B 23 323 93 HOH HOH . J 5 HOH B 24 324 130 HOH HOH . J 5 HOH B 25 325 154 HOH HOH . J 5 HOH B 26 326 94 HOH HOH . J 5 HOH B 27 327 15 HOH HOH . J 5 HOH B 28 328 132 HOH HOH . J 5 HOH B 29 329 12 HOH HOH . J 5 HOH B 30 330 16 HOH HOH . J 5 HOH B 31 331 2 HOH HOH . J 5 HOH B 32 332 85 HOH HOH . J 5 HOH B 33 333 114 HOH HOH . J 5 HOH B 34 334 160 HOH HOH . J 5 HOH B 35 335 4 HOH HOH . J 5 HOH B 36 336 43 HOH HOH . J 5 HOH B 37 337 10 HOH HOH . J 5 HOH B 38 338 115 HOH HOH . J 5 HOH B 39 339 70 HOH HOH . J 5 HOH B 40 340 17 HOH HOH . J 5 HOH B 41 341 7 HOH HOH . J 5 HOH B 42 342 27 HOH HOH . J 5 HOH B 43 343 157 HOH HOH . J 5 HOH B 44 344 69 HOH HOH . J 5 HOH B 45 345 53 HOH HOH . J 5 HOH B 46 346 35 HOH HOH . J 5 HOH B 47 347 46 HOH HOH . J 5 HOH B 48 348 52 HOH HOH . J 5 HOH B 49 349 32 HOH HOH . J 5 HOH B 50 350 72 HOH HOH . J 5 HOH B 51 351 18 HOH HOH . J 5 HOH B 52 352 22 HOH HOH . J 5 HOH B 53 353 19 HOH HOH . J 5 HOH B 54 354 77 HOH HOH . J 5 HOH B 55 355 89 HOH HOH . J 5 HOH B 56 356 8 HOH HOH . J 5 HOH B 57 357 123 HOH HOH . J 5 HOH B 58 358 107 HOH HOH . J 5 HOH B 59 359 82 HOH HOH . J 5 HOH B 60 360 103 HOH HOH . J 5 HOH B 61 361 135 HOH HOH . J 5 HOH B 62 362 95 HOH HOH . J 5 HOH B 63 363 28 HOH HOH . J 5 HOH B 64 364 66 HOH HOH . J 5 HOH B 65 365 99 HOH HOH . J 5 HOH B 66 366 65 HOH HOH . J 5 HOH B 67 367 90 HOH HOH . J 5 HOH B 68 368 108 HOH HOH . J 5 HOH B 69 369 165 HOH HOH . J 5 HOH B 70 370 131 HOH HOH . J 5 HOH B 71 371 177 HOH HOH . J 5 HOH B 72 372 113 HOH HOH . J 5 HOH B 73 373 91 HOH HOH . J 5 HOH B 74 374 40 HOH HOH . J 5 HOH B 75 375 164 HOH HOH . J 5 HOH B 76 376 45 HOH HOH . J 5 HOH B 77 377 106 HOH HOH . J 5 HOH B 78 378 88 HOH HOH . J 5 HOH B 79 379 166 HOH HOH . J 5 HOH B 80 380 152 HOH HOH . J 5 HOH B 81 381 101 HOH HOH . J 5 HOH B 82 382 129 HOH HOH . J 5 HOH B 83 383 143 HOH HOH . J 5 HOH B 84 384 148 HOH HOH . J 5 HOH B 85 385 125 HOH HOH . J 5 HOH B 86 386 140 HOH HOH . J 5 HOH B 87 387 139 HOH HOH . J 5 HOH B 88 388 175 HOH HOH . J 5 HOH B 89 389 156 HOH HOH . J 5 HOH B 90 390 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . D 3 -21.988 11.37 10.609 1 40.12 ? C1 RET 202 A 1 HETATM 2 C C2 RET . . . D 3 -22.709 11.209 9.24 1 41.6 ? C2 RET 202 A 1 HETATM 3 C C3 RET . . . D 3 -23.059 9.828 8.686 1 38.68 ? C3 RET 202 A 1 HETATM 4 C C4 RET . . . D 3 -22.7 8.657 9.582 1 39.32 ? C4 RET 202 A 1 HETATM 5 C C5 RET . . . D 3 -22.673 9 11.025 1 39.98 ? C5 RET 202 A 1 HETATM 6 C C6 RET . . . D 3 -22.063 10.106 11.466 1 38.1 ? C6 RET 202 A 1 HETATM 7 C C7 RET . . . D 3 -21.516 10.172 12.809 1 38.45 ? C7 RET 202 A 1 HETATM 8 C C8 RET . . . D 3 -20.911 11.234 13.438 1 36.21 ? C8 RET 202 A 1 HETATM 9 C C9 RET . . . D 3 -20.391 11.262 14.792 1 36.48 ? C9 RET 202 A 1 HETATM 10 C C10 RET . . . D 3 -19.331 12.064 15.076 1 31.85 ? C10 RET 202 A 1 HETATM 11 C C11 RET . . . D 3 -18.704 12.256 16.355 1 31.87 ? C11 RET 202 A 1 HETATM 12 C C12 RET . . . D 3 -17.93 13.319 16.65 1 29.6 ? C12 RET 202 A 1 HETATM 13 C C13 RET . . . D 3 -17.298 13.6 17.925 1 27.91 ? C13 RET 202 A 1 HETATM 14 C C14 RET . . . D 3 -16.353 14.569 18.001 1 29.04 ? C14 RET 202 A 1 HETATM 15 C C15 RET . . . D 3 -15.641 15.002 19.176 1 31.08 ? C15 RET 202 A 1 HETATM 16 C C16 RET . . . D 3 -20.524 11.728 10.327 1 41.78 ? C16 RET 202 A 1 HETATM 17 C C17 RET . . . D 3 -22.656 12.55 11.326 1 38.3 ? C17 RET 202 A 1 HETATM 18 C C18 RET . . . D 3 -23.684 8.225 11.825 1 43.05 ? C18 RET 202 A 1 HETATM 19 C C19 RET . . . D 3 -21.082 10.42 15.826 1 34.38 ? C19 RET 202 A 1 HETATM 20 C C20 RET . . . D 3 -17.757 12.814 19.122 1 32.83 ? C20 RET 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 736 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 20 #