data_7LHM # _model_server_result.job_id TG5BY_kpEOwAoAzRDerI_g _model_server_result.datetime_utc '2024-11-15 03:08:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 7LHM # _exptl.entry_id 7LHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.81 _cell.angle_beta 93.4 _cell.angle_gamma 115.9 _cell.entry_id 7LHM _cell.length_a 30.979 _cell.length_b 36.479 _cell.length_c 63.896 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 108 A LYS 108 1_555 D C15 RET . A RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.207 ? covale ? covale2 B NZ LYS 108 B LYS 108 1_555 G C15 RET . B RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.069 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 7LHM _atom_sites.fract_transf_matrix[1][1] 0.03228 _atom_sites.fract_transf_matrix[1][2] 0.015678 _atom_sites.fract_transf_matrix[1][3] 0.002621 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030475 _atom_sites.fract_transf_matrix[2][3] 0.001362 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 201 4 ACT ACT . D 3 RET A 1 202 1 RET RET . E 4 GOL A 1 203 2 GOL GOL . F 2 ACT B 1 201 1 ACT ACT . G 3 RET B 1 202 2 RET RET . H 4 GOL B 1 203 1 GOL GOL . I 5 HOH A 1 301 71 HOH HOH . I 5 HOH A 2 302 79 HOH HOH . I 5 HOH A 3 303 56 HOH HOH . I 5 HOH A 4 304 54 HOH HOH . I 5 HOH A 5 305 159 HOH HOH . I 5 HOH A 6 306 31 HOH HOH . I 5 HOH A 7 307 59 HOH HOH . I 5 HOH A 8 308 44 HOH HOH . I 5 HOH A 9 309 112 HOH HOH . I 5 HOH A 10 310 120 HOH HOH . I 5 HOH A 11 311 5 HOH HOH . I 5 HOH A 12 312 39 HOH HOH . I 5 HOH A 13 313 48 HOH HOH . I 5 HOH A 14 314 122 HOH HOH . I 5 HOH A 15 315 83 HOH HOH . I 5 HOH A 16 316 60 HOH HOH . I 5 HOH A 17 317 26 HOH HOH . I 5 HOH A 18 318 13 HOH HOH . I 5 HOH A 19 319 161 HOH HOH . I 5 HOH A 20 320 14 HOH HOH . I 5 HOH A 21 321 128 HOH HOH . I 5 HOH A 22 322 1 HOH HOH . I 5 HOH A 23 323 20 HOH HOH . I 5 HOH A 24 324 138 HOH HOH . I 5 HOH A 25 325 102 HOH HOH . I 5 HOH A 26 326 136 HOH HOH . I 5 HOH A 27 327 162 HOH HOH . I 5 HOH A 28 328 9 HOH HOH . I 5 HOH A 29 329 49 HOH HOH . I 5 HOH A 30 330 50 HOH HOH . I 5 HOH A 31 331 21 HOH HOH . I 5 HOH A 32 332 80 HOH HOH . I 5 HOH A 33 333 38 HOH HOH . I 5 HOH A 34 334 34 HOH HOH . I 5 HOH A 35 335 47 HOH HOH . I 5 HOH A 36 336 116 HOH HOH . I 5 HOH A 37 337 42 HOH HOH . I 5 HOH A 38 338 25 HOH HOH . I 5 HOH A 39 339 127 HOH HOH . I 5 HOH A 40 340 55 HOH HOH . I 5 HOH A 41 341 124 HOH HOH . I 5 HOH A 42 342 3 HOH HOH . I 5 HOH A 43 343 81 HOH HOH . I 5 HOH A 44 344 146 HOH HOH . I 5 HOH A 45 345 6 HOH HOH . I 5 HOH A 46 346 36 HOH HOH . I 5 HOH A 47 347 145 HOH HOH . I 5 HOH A 48 348 141 HOH HOH . I 5 HOH A 49 349 78 HOH HOH . I 5 HOH A 50 350 158 HOH HOH . I 5 HOH A 51 351 62 HOH HOH . I 5 HOH A 52 352 24 HOH HOH . I 5 HOH A 53 353 96 HOH HOH . I 5 HOH A 54 354 58 HOH HOH . I 5 HOH A 55 355 51 HOH HOH . I 5 HOH A 56 356 33 HOH HOH . I 5 HOH A 57 357 168 HOH HOH . I 5 HOH A 58 358 29 HOH HOH . I 5 HOH A 59 359 84 HOH HOH . I 5 HOH A 60 360 76 HOH HOH . I 5 HOH A 61 361 74 HOH HOH . I 5 HOH A 62 362 144 HOH HOH . I 5 HOH A 63 363 63 HOH HOH . I 5 HOH A 64 364 126 HOH HOH . I 5 HOH A 65 365 153 HOH HOH . I 5 HOH A 66 366 133 HOH HOH . I 5 HOH A 67 367 118 HOH HOH . I 5 HOH A 68 368 173 HOH HOH . I 5 HOH A 69 369 137 HOH HOH . I 5 HOH A 70 370 151 HOH HOH . I 5 HOH A 71 371 142 HOH HOH . I 5 HOH A 72 372 119 HOH HOH . I 5 HOH A 73 373 86 HOH HOH . I 5 HOH A 74 374 104 HOH HOH . I 5 HOH A 75 375 87 HOH HOH . I 5 HOH A 76 376 176 HOH HOH . I 5 HOH A 77 377 23 HOH HOH . I 5 HOH A 78 378 174 HOH HOH . I 5 HOH A 79 379 100 HOH HOH . I 5 HOH A 80 380 75 HOH HOH . I 5 HOH A 81 381 92 HOH HOH . J 5 HOH B 1 301 37 HOH HOH . J 5 HOH B 2 302 68 HOH HOH . J 5 HOH B 3 303 105 HOH HOH . J 5 HOH B 4 304 163 HOH HOH . J 5 HOH B 5 305 111 HOH HOH . J 5 HOH B 6 306 121 HOH HOH . J 5 HOH B 7 307 64 HOH HOH . J 5 HOH B 8 308 110 HOH HOH . J 5 HOH B 9 309 67 HOH HOH . J 5 HOH B 10 310 134 HOH HOH . J 5 HOH B 11 311 155 HOH HOH . J 5 HOH B 12 312 41 HOH HOH . J 5 HOH B 13 313 109 HOH HOH . J 5 HOH B 14 314 150 HOH HOH . J 5 HOH B 15 315 61 HOH HOH . J 5 HOH B 16 316 57 HOH HOH . J 5 HOH B 17 317 97 HOH HOH . J 5 HOH B 18 318 30 HOH HOH . J 5 HOH B 19 319 73 HOH HOH . J 5 HOH B 20 320 167 HOH HOH . J 5 HOH B 21 321 11 HOH HOH . J 5 HOH B 22 322 98 HOH HOH . J 5 HOH B 23 323 93 HOH HOH . J 5 HOH B 24 324 130 HOH HOH . J 5 HOH B 25 325 154 HOH HOH . J 5 HOH B 26 326 94 HOH HOH . J 5 HOH B 27 327 15 HOH HOH . J 5 HOH B 28 328 132 HOH HOH . J 5 HOH B 29 329 12 HOH HOH . J 5 HOH B 30 330 16 HOH HOH . J 5 HOH B 31 331 2 HOH HOH . J 5 HOH B 32 332 85 HOH HOH . J 5 HOH B 33 333 114 HOH HOH . J 5 HOH B 34 334 160 HOH HOH . J 5 HOH B 35 335 4 HOH HOH . J 5 HOH B 36 336 43 HOH HOH . J 5 HOH B 37 337 10 HOH HOH . J 5 HOH B 38 338 115 HOH HOH . J 5 HOH B 39 339 70 HOH HOH . J 5 HOH B 40 340 17 HOH HOH . J 5 HOH B 41 341 7 HOH HOH . J 5 HOH B 42 342 27 HOH HOH . J 5 HOH B 43 343 157 HOH HOH . J 5 HOH B 44 344 69 HOH HOH . J 5 HOH B 45 345 53 HOH HOH . J 5 HOH B 46 346 35 HOH HOH . J 5 HOH B 47 347 46 HOH HOH . J 5 HOH B 48 348 52 HOH HOH . J 5 HOH B 49 349 32 HOH HOH . J 5 HOH B 50 350 72 HOH HOH . J 5 HOH B 51 351 18 HOH HOH . J 5 HOH B 52 352 22 HOH HOH . J 5 HOH B 53 353 19 HOH HOH . J 5 HOH B 54 354 77 HOH HOH . J 5 HOH B 55 355 89 HOH HOH . J 5 HOH B 56 356 8 HOH HOH . J 5 HOH B 57 357 123 HOH HOH . J 5 HOH B 58 358 107 HOH HOH . J 5 HOH B 59 359 82 HOH HOH . J 5 HOH B 60 360 103 HOH HOH . J 5 HOH B 61 361 135 HOH HOH . J 5 HOH B 62 362 95 HOH HOH . J 5 HOH B 63 363 28 HOH HOH . J 5 HOH B 64 364 66 HOH HOH . J 5 HOH B 65 365 99 HOH HOH . J 5 HOH B 66 366 65 HOH HOH . J 5 HOH B 67 367 90 HOH HOH . J 5 HOH B 68 368 108 HOH HOH . J 5 HOH B 69 369 165 HOH HOH . J 5 HOH B 70 370 131 HOH HOH . J 5 HOH B 71 371 177 HOH HOH . J 5 HOH B 72 372 113 HOH HOH . J 5 HOH B 73 373 91 HOH HOH . J 5 HOH B 74 374 40 HOH HOH . J 5 HOH B 75 375 164 HOH HOH . J 5 HOH B 76 376 45 HOH HOH . J 5 HOH B 77 377 106 HOH HOH . J 5 HOH B 78 378 88 HOH HOH . J 5 HOH B 79 379 166 HOH HOH . J 5 HOH B 80 380 152 HOH HOH . J 5 HOH B 81 381 101 HOH HOH . J 5 HOH B 82 382 129 HOH HOH . J 5 HOH B 83 383 143 HOH HOH . J 5 HOH B 84 384 148 HOH HOH . J 5 HOH B 85 385 125 HOH HOH . J 5 HOH B 86 386 140 HOH HOH . J 5 HOH B 87 387 139 HOH HOH . J 5 HOH B 88 388 175 HOH HOH . J 5 HOH B 89 389 156 HOH HOH . J 5 HOH B 90 390 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -7.276 11.612 -13.74 1 37.29 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . H 4 -6.823 12.717 -14.502 1 40.23 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . H 4 -7.518 10.481 -14.71 1 37.77 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . H 4 -6.427 9.584 -14.621 1 34.59 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . H 4 -8.846 9.824 -14.432 1 29.35 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . H 4 -8.788 8.412 -14.493 1 28.45 ? O3 GOL 203 B 1 HETATM 7 H H11 GOL . . . H 4 -8.2 11.867 -13.217 1 44.79 ? H11 GOL 203 B 1 HETATM 8 H H12 GOL . . . H 4 -6.523 11.325 -13.003 1 44.79 ? H12 GOL 203 B 1 HETATM 9 H HO1 GOL . . . H 4 -6.237 13.263 -13.96 1 48.32 ? HO1 GOL 203 B 1 HETATM 10 H H2 GOL . . . H 4 -7.555 10.904 -15.724 1 45.37 ? H2 GOL 203 B 1 HETATM 11 H HO2 GOL . . . H 4 -5.601 10.084 -14.58 1 41.55 ? HO2 GOL 203 B 1 HETATM 12 H H31 GOL . . . H 4 -9.19 10.124 -13.44 1 35.27 ? H31 GOL 203 B 1 HETATM 13 H H32 GOL . . . H 4 -9.58 10.183 -15.157 1 35.27 ? H32 GOL 203 B 1 HETATM 14 H HO3 GOL . . . H 4 -8.373 8.142 -15.324 1 34.19 ? HO3 GOL 203 B 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 169 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 486 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #