data_7LHN # _model_server_result.job_id CxcQ5RwWQNYH1UvSpqK5-g _model_server_result.datetime_utc '2024-10-10 02:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7LHN # _exptl.entry_id 7LHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.18 _cell.angle_beta 86.478 _cell.angle_gamma 65.224 _cell.entry_id 7LHN _cell.length_a 30.755 _cell.length_b 35.773 _cell.length_c 64.153 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 108 A LYS 108 1_555 D C15 RET . A RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 B NZ LYS 108 B LYS 108 1_555 E C15 RET . B RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 273 n n C1 C6 RET sing 274 n n C1 C16 RET sing 275 n n C1 C17 RET sing 276 n n C2 C3 RET sing 277 n n C2 H21 RET sing 278 n n C2 H22 RET sing 279 n n C3 C4 RET sing 280 n n C3 H31 RET sing 281 n n C3 H32 RET sing 282 n n C4 C5 RET sing 283 n n C4 H41 RET sing 284 n n C4 H42 RET sing 285 n n C5 C6 RET doub 286 n n C5 C18 RET sing 287 n n C6 C7 RET sing 288 n n C7 C8 RET doub 289 e n C7 H7 RET sing 290 n n C8 C9 RET sing 291 n n C8 H8 RET sing 292 n n C9 C10 RET doub 293 e n C9 C19 RET sing 294 n n C10 C11 RET sing 295 n n C10 H10 RET sing 296 n n C11 C12 RET doub 297 e n C11 H11 RET sing 298 n n C12 C13 RET sing 299 n n C12 H12 RET sing 300 n n C13 C14 RET doub 301 e n C13 C20 RET sing 302 n n C14 C15 RET sing 303 n n C14 H14 RET sing 304 n n C15 O1 RET doub 305 n n C15 H15 RET sing 306 n n C16 H161 RET sing 307 n n C16 H162 RET sing 308 n n C16 H163 RET sing 309 n n C17 H171 RET sing 310 n n C17 H172 RET sing 311 n n C17 H173 RET sing 312 n n C18 H181 RET sing 313 n n C18 H182 RET sing 314 n n C18 H183 RET sing 315 n n C19 H191 RET sing 316 n n C19 H192 RET sing 317 n n C19 H193 RET sing 318 n n C20 H201 RET sing 319 n n C20 H202 RET sing 320 n n C20 H203 RET sing 321 n n # _atom_sites.entry_id 7LHN _atom_sites.fract_transf_matrix[1][1] 0.032515 _atom_sites.fract_transf_matrix[1][2] -0.015008 _atom_sites.fract_transf_matrix[1][3] -0.001326 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030788 _atom_sites.fract_transf_matrix[2][3] -0.00139 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 201 1 GOL GOL . D 3 RET A 1 202 1 RET RET . E 3 RET B 1 201 2 RET RET . F 4 HOH A 1 301 74 HOH HOH . F 4 HOH A 2 302 93 HOH HOH . F 4 HOH A 3 303 101 HOH HOH . F 4 HOH A 4 304 73 HOH HOH . F 4 HOH A 5 305 57 HOH HOH . F 4 HOH A 6 306 60 HOH HOH . F 4 HOH A 7 307 97 HOH HOH . F 4 HOH A 8 308 61 HOH HOH . F 4 HOH A 9 309 50 HOH HOH . F 4 HOH A 10 310 10 HOH HOH . F 4 HOH A 11 311 95 HOH HOH . F 4 HOH A 12 312 52 HOH HOH . F 4 HOH A 13 313 112 HOH HOH . F 4 HOH A 14 314 12 HOH HOH . F 4 HOH A 15 315 31 HOH HOH . F 4 HOH A 16 316 32 HOH HOH . F 4 HOH A 17 317 114 HOH HOH . F 4 HOH A 18 318 51 HOH HOH . F 4 HOH A 19 319 120 HOH HOH . F 4 HOH A 20 320 14 HOH HOH . F 4 HOH A 21 321 98 HOH HOH . F 4 HOH A 22 322 58 HOH HOH . F 4 HOH A 23 323 105 HOH HOH . F 4 HOH A 24 324 108 HOH HOH . F 4 HOH A 25 325 1 HOH HOH . F 4 HOH A 26 326 46 HOH HOH . F 4 HOH A 27 327 43 HOH HOH . F 4 HOH A 28 328 75 HOH HOH . F 4 HOH A 29 329 116 HOH HOH . F 4 HOH A 30 330 53 HOH HOH . F 4 HOH A 31 331 11 HOH HOH . F 4 HOH A 32 332 7 HOH HOH . F 4 HOH A 33 333 16 HOH HOH . F 4 HOH A 34 334 13 HOH HOH . F 4 HOH A 35 335 47 HOH HOH . F 4 HOH A 36 336 2 HOH HOH . F 4 HOH A 37 337 22 HOH HOH . F 4 HOH A 38 338 96 HOH HOH . F 4 HOH A 39 339 172 HOH HOH . F 4 HOH A 40 340 76 HOH HOH . F 4 HOH A 41 341 45 HOH HOH . F 4 HOH A 42 342 115 HOH HOH . F 4 HOH A 43 343 171 HOH HOH . F 4 HOH A 44 344 3 HOH HOH . F 4 HOH A 45 345 106 HOH HOH . F 4 HOH A 46 346 94 HOH HOH . F 4 HOH A 47 347 28 HOH HOH . F 4 HOH A 48 348 166 HOH HOH . F 4 HOH A 49 349 121 HOH HOH . F 4 HOH A 50 350 91 HOH HOH . F 4 HOH A 51 351 170 HOH HOH . F 4 HOH A 52 352 111 HOH HOH . F 4 HOH A 53 353 167 HOH HOH . F 4 HOH A 54 354 42 HOH HOH . F 4 HOH A 55 355 168 HOH HOH . F 4 HOH A 56 356 54 HOH HOH . F 4 HOH A 57 357 113 HOH HOH . F 4 HOH A 58 358 131 HOH HOH . F 4 HOH A 59 359 122 HOH HOH . F 4 HOH A 60 360 55 HOH HOH . F 4 HOH A 61 361 56 HOH HOH . F 4 HOH A 62 362 99 HOH HOH . F 4 HOH A 63 363 175 HOH HOH . F 4 HOH A 64 364 138 HOH HOH . F 4 HOH A 65 365 125 HOH HOH . F 4 HOH A 66 366 15 HOH HOH . F 4 HOH A 67 367 44 HOH HOH . F 4 HOH A 68 368 100 HOH HOH . F 4 HOH A 69 369 119 HOH HOH . F 4 HOH A 70 370 124 HOH HOH . F 4 HOH A 71 371 48 HOH HOH . F 4 HOH A 72 372 129 HOH HOH . F 4 HOH A 73 373 104 HOH HOH . F 4 HOH A 74 374 126 HOH HOH . F 4 HOH A 75 375 145 HOH HOH . F 4 HOH A 76 376 107 HOH HOH . F 4 HOH A 77 377 49 HOH HOH . F 4 HOH A 78 378 169 HOH HOH . G 4 HOH B 1 301 77 HOH HOH . G 4 HOH B 2 302 72 HOH HOH . G 4 HOH B 3 303 149 HOH HOH . G 4 HOH B 4 304 163 HOH HOH . G 4 HOH B 5 305 144 HOH HOH . G 4 HOH B 6 306 132 HOH HOH . G 4 HOH B 7 307 64 HOH HOH . G 4 HOH B 8 308 103 HOH HOH . G 4 HOH B 9 309 173 HOH HOH . G 4 HOH B 10 310 118 HOH HOH . G 4 HOH B 11 311 80 HOH HOH . G 4 HOH B 12 312 65 HOH HOH . G 4 HOH B 13 313 155 HOH HOH . G 4 HOH B 14 314 62 HOH HOH . G 4 HOH B 15 315 69 HOH HOH . G 4 HOH B 16 316 88 HOH HOH . G 4 HOH B 17 317 83 HOH HOH . G 4 HOH B 18 318 30 HOH HOH . G 4 HOH B 19 319 37 HOH HOH . G 4 HOH B 20 320 23 HOH HOH . G 4 HOH B 21 321 35 HOH HOH . G 4 HOH B 22 322 160 HOH HOH . G 4 HOH B 23 323 133 HOH HOH . G 4 HOH B 24 324 135 HOH HOH . G 4 HOH B 25 325 90 HOH HOH . G 4 HOH B 26 326 153 HOH HOH . G 4 HOH B 27 327 66 HOH HOH . G 4 HOH B 28 328 19 HOH HOH . G 4 HOH B 29 329 71 HOH HOH . G 4 HOH B 30 330 123 HOH HOH . G 4 HOH B 31 331 39 HOH HOH . G 4 HOH B 32 332 17 HOH HOH . G 4 HOH B 33 333 151 HOH HOH . G 4 HOH B 34 334 136 HOH HOH . G 4 HOH B 35 335 41 HOH HOH . G 4 HOH B 36 336 34 HOH HOH . G 4 HOH B 37 337 63 HOH HOH . G 4 HOH B 38 338 176 HOH HOH . G 4 HOH B 39 339 81 HOH HOH . G 4 HOH B 40 340 29 HOH HOH . G 4 HOH B 41 341 142 HOH HOH . G 4 HOH B 42 342 150 HOH HOH . G 4 HOH B 43 343 156 HOH HOH . G 4 HOH B 44 344 8 HOH HOH . G 4 HOH B 45 345 5 HOH HOH . G 4 HOH B 46 346 4 HOH HOH . G 4 HOH B 47 347 24 HOH HOH . G 4 HOH B 48 348 102 HOH HOH . G 4 HOH B 49 349 109 HOH HOH . G 4 HOH B 50 350 79 HOH HOH . G 4 HOH B 51 351 148 HOH HOH . G 4 HOH B 52 352 20 HOH HOH . G 4 HOH B 53 353 68 HOH HOH . G 4 HOH B 54 354 26 HOH HOH . G 4 HOH B 55 355 40 HOH HOH . G 4 HOH B 56 356 177 HOH HOH . G 4 HOH B 57 357 158 HOH HOH . G 4 HOH B 58 358 82 HOH HOH . G 4 HOH B 59 359 18 HOH HOH . G 4 HOH B 60 360 84 HOH HOH . G 4 HOH B 61 361 27 HOH HOH . G 4 HOH B 62 362 165 HOH HOH . G 4 HOH B 63 363 110 HOH HOH . G 4 HOH B 64 364 159 HOH HOH . G 4 HOH B 65 365 147 HOH HOH . G 4 HOH B 66 366 87 HOH HOH . G 4 HOH B 67 367 141 HOH HOH . G 4 HOH B 68 368 134 HOH HOH . G 4 HOH B 69 369 128 HOH HOH . G 4 HOH B 70 370 162 HOH HOH . G 4 HOH B 71 371 38 HOH HOH . G 4 HOH B 72 372 137 HOH HOH . G 4 HOH B 73 373 127 HOH HOH . G 4 HOH B 74 374 92 HOH HOH . G 4 HOH B 75 375 89 HOH HOH . G 4 HOH B 76 376 140 HOH HOH . G 4 HOH B 77 377 70 HOH HOH . G 4 HOH B 78 378 36 HOH HOH . G 4 HOH B 79 379 143 HOH HOH . G 4 HOH B 80 380 146 HOH HOH . G 4 HOH B 81 381 85 HOH HOH . G 4 HOH B 82 382 164 HOH HOH . G 4 HOH B 83 383 154 HOH HOH . G 4 HOH B 84 384 139 HOH HOH . G 4 HOH B 85 385 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . D 3 -8.438 -11.687 10.484 1 33.22 ? C1 RET 202 A 1 HETATM 2 C C2 RET . . . D 3 -7.524 -11.494 9.259 1 34.91 ? C2 RET 202 A 1 HETATM 3 C C3 RET . . . D 3 -7.766 -10.19 8.515 1 35.11 ? C3 RET 202 A 1 HETATM 4 C C4 RET . . . D 3 -7.622 -8.997 9.442 1 33.27 ? C4 RET 202 A 1 HETATM 5 C C5 RET . . . D 3 -8.229 -9.183 10.812 1 30.15 ? C5 RET 202 A 1 HETATM 6 C C6 RET . . . D 3 -8.568 -10.403 11.289 1 32.82 ? C6 RET 202 A 1 HETATM 7 C C7 RET . . . D 3 -9.015 -10.558 12.666 1 29.8 ? C7 RET 202 A 1 HETATM 8 C C8 RET . . . D 3 -9.881 -11.476 13.156 1 31.18 ? C8 RET 202 A 1 HETATM 9 C C9 RET . . . D 3 -10.29 -11.577 14.557 1 27.73 ? C9 RET 202 A 1 HETATM 10 C C10 RET . . . D 3 -11.102 -12.593 14.948 1 23.57 ? C10 RET 202 A 1 HETATM 11 C C11 RET . . . D 3 -11.601 -12.835 16.273 1 27.18 ? C11 RET 202 A 1 HETATM 12 C C12 RET . . . D 3 -12.394 -13.855 16.599 1 25.57 ? C12 RET 202 A 1 HETATM 13 C C13 RET . . . D 3 -12.938 -14.128 17.919 1 23.38 ? C13 RET 202 A 1 HETATM 14 C C14 RET . . . D 3 -13.963 -15.001 18.05 1 23.53 ? C14 RET 202 A 1 HETATM 15 C C15 RET . . . D 3 -14.63 -15.375 19.272 1 18.92 ? C15 RET 202 A 1 HETATM 16 C C16 RET . . . D 3 -9.819 -12.132 9.993 1 27.67 ? C16 RET 202 A 1 HETATM 17 C C17 RET . . . D 3 -7.841 -12.808 11.343 1 30.06 ? C17 RET 202 A 1 HETATM 18 C C18 RET . . . D 3 -8.676 -7.895 11.416 1 26.66 ? C18 RET 202 A 1 HETATM 19 C C19 RET . . . D 3 -9.789 -10.533 15.514 1 30.92 ? C19 RET 202 A 1 HETATM 20 C C20 RET . . . D 3 -12.349 -13.393 19.092 1 28.49 ? C20 RET 202 A 1 HETATM 21 H H21 RET . . . D 3 -6.602 -11.51 9.557 1 41.97 ? H21 RET 202 A 1 HETATM 22 H H22 RET . . . D 3 -7.674 -12.23 8.645 1 41.97 ? H22 RET 202 A 1 HETATM 23 H H31 RET . . . D 3 -7.122 -10.112 7.794 1 42.21 ? H31 RET 202 A 1 HETATM 24 H H32 RET . . . D 3 -8.662 -10.198 8.144 1 42.21 ? H32 RET 202 A 1 HETATM 25 H H41 RET . . . D 3 -6.677 -8.811 9.551 1 40 ? H41 RET 202 A 1 HETATM 26 H H42 RET . . . D 3 -8.05 -8.235 9.021 1 40 ? H42 RET 202 A 1 HETATM 27 H H7 RET . . . D 3 -8.664 -9.95 13.27 1 35.84 ? H7 RET 202 A 1 HETATM 28 H H8 RET . . . D 3 -10.244 -12.093 12.563 1 37.5 ? H8 RET 202 A 1 HETATM 29 H H10 RET . . . D 3 -11.366 -13.194 14.284 1 28.36 ? H10 RET 202 A 1 HETATM 30 H H11 RET . . . D 3 -11.364 -12.239 16.945 1 32.7 ? H11 RET 202 A 1 HETATM 31 H H12 RET . . . D 3 -12.629 -14.437 15.913 1 30.77 ? H12 RET 202 A 1 HETATM 32 H H14 RET . . . D 3 -14.266 -15.403 17.269 1 28.32 ? H14 RET 202 A 1 HETATM 33 H H15 RET . . . D 3 -14.38 -15.01 20.088 1 22.78 ? H15 RET 202 A 1 HETATM 34 H H161 RET . . . D 3 -10.435 -11.384 10.038 1 33.29 ? H161 RET 202 A 1 HETATM 35 H H162 RET . . . D 3 -9.753 -12.442 9.076 1 33.29 ? H162 RET 202 A 1 HETATM 36 H H163 RET . . . D 3 -10.145 -12.853 10.555 1 33.29 ? H163 RET 202 A 1 HETATM 37 H H171 RET . . . D 3 -7.31 -13.396 10.784 1 36.16 ? H171 RET 202 A 1 HETATM 38 H H172 RET . . . D 3 -7.278 -12.422 12.033 1 36.16 ? H172 RET 202 A 1 HETATM 39 H H173 RET . . . D 3 -8.557 -13.315 11.756 1 36.16 ? H173 RET 202 A 1 HETATM 40 H H181 RET . . . D 3 -9.548 -8.014 11.825 1 32.08 ? H181 RET 202 A 1 HETATM 41 H H182 RET . . . D 3 -8.733 -7.216 10.726 1 32.08 ? H182 RET 202 A 1 HETATM 42 H H183 RET . . . D 3 -8.038 -7.616 12.092 1 32.08 ? H183 RET 202 A 1 HETATM 43 H H191 RET . . . D 3 -10.338 -10.536 16.314 1 37.19 ? H191 RET 202 A 1 HETATM 44 H H192 RET . . . D 3 -9.835 -9.66 15.094 1 37.19 ? H192 RET 202 A 1 HETATM 45 H H193 RET . . . D 3 -8.869 -10.728 15.753 1 37.19 ? H193 RET 202 A 1 HETATM 46 H H201 RET . . . D 3 -12.713 -12.494 19.126 1 34.27 ? H201 RET 202 A 1 HETATM 47 H H202 RET . . . D 3 -11.385 -13.348 18.995 1 34.27 ? H202 RET 202 A 1 HETATM 48 H H203 RET . . . D 3 -12.57 -13.862 19.912 1 34.27 ? H203 RET 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #