data_7LIA # _model_server_result.job_id B6dZj-58hKW4Dqk06W27Nw _model_server_result.datetime_utc '2024-11-22 13:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":905}' # _entry.id 7LIA # _exptl.entry_id 7LIA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 176.215 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LIA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 I N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2502 NAG 4 n D NAG 2 D 2 NAG A 2503 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 A CYS 200 1_555 A SG CYS 131 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 23 C CYS 43 1_555 C SG CYS 92 C CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 130 A ASN 208 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? metalc ? metalc1 A O GLY 16 A GLY 94 1_555 H NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc2 A O ALA 18 A ALA 96 1_555 G NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc3 A O VAL 19 A VAL 97 1_555 H NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc4 A OD1 ASP 20 A ASP 98 1_555 G NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc5 A O SER 258 A SER 336 1_555 G NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? metalc ? metalc6 A OD2 ASP 359 A ASP 437 1_555 H NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CZ3 SRO sing 464 n n OH HOH SRO sing 465 n n CZ3 CE3 SRO doub 466 n y CZ3 CH2 SRO sing 467 n y CH2 CZ2 SRO doub 468 n y CH2 HH2 SRO sing 469 n n CZ2 CE2 SRO sing 470 n y CZ2 HZ2 SRO sing 471 n n CE2 NE1 SRO sing 472 n y CE2 CD2 SRO doub 473 n y NE1 CD1 SRO sing 474 n y NE1 HNE1 SRO sing 475 n n CD1 CG SRO doub 476 n y CD1 HD1 SRO sing 477 n n CG CB SRO sing 478 n n CG CD2 SRO sing 479 n y CD2 CE3 SRO sing 480 n y CE3 HE3 SRO sing 481 n n CB CA SRO sing 482 n n CB HB1 SRO sing 483 n n CB HB2 SRO sing 484 n n CA NZ SRO sing 485 n n CA HA1 SRO sing 486 n n CA HA2 SRO sing 487 n n NZ HNZ1 SRO sing 488 n n NZ HNZ2 SRO sing 489 n n # _atom_sites.entry_id 7LIA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SRO A 1 901 901 SRO LIG . F 6 CL A 1 902 1001 CL CL . G 7 NA A 1 903 1101 NA NA . H 7 NA A 1 904 1201 NA NA . I 5 SRO A 1 905 1301 SRO LIG . J 8 D10 A 1 906 1404 D10 D10 . K 9 HP6 A 1 907 1405 HP6 HP6 . L 9 HP6 A 1 908 1406 HP6 HP6 . M 9 HP6 A 1 909 1407 HP6 HP6 . N 9 HP6 A 1 910 1408 HP6 HP6 . O 9 HP6 A 1 911 1409 HP6 HP6 . P 9 HP6 A 1 912 1410 HP6 HP6 . Q 9 HP6 A 1 913 1411 HP6 HP6 . R 9 HP6 A 1 914 1412 HP6 HP6 . S 9 HP6 A 1 915 1413 HP6 HP6 . T 9 HP6 A 1 916 1414 HP6 HP6 . U 10 LNK A 1 917 1501 LNK LNK . V 8 D10 A 1 918 1801 D10 D10 . W 8 D10 A 1 919 1901 D10 D10 . X 9 HP6 A 1 920 2001 HP6 HP6 . Y 9 HP6 A 1 921 2101 HP6 HP6 . Z 9 HP6 A 1 922 2201 HP6 HP6 . AA 8 D10 A 1 923 2301 D10 D10 . BA 8 D10 A 1 924 2401 D10 D10 . CA 11 CLR A 1 925 2501 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . I 5 133.462 141.068 142.721 1 22.74 ? OH SRO 905 A 1 HETATM 2 C CZ3 SRO . . . I 5 134.818 140.877 143.012 1 22.74 ? CZ3 SRO 905 A 1 HETATM 3 C CH2 SRO . . . I 5 135.469 141.741 143.894 1 22.74 ? CH2 SRO 905 A 1 HETATM 4 C CZ2 SRO . . . I 5 136.814 141.553 144.184 1 22.74 ? CZ2 SRO 905 A 1 HETATM 5 C CE2 SRO . . . I 5 137.527 140.48 143.584 1 22.74 ? CE2 SRO 905 A 1 HETATM 6 N NE1 SRO . . . I 5 138.824 140.09 143.703 1 22.74 ? NE1 SRO 905 A 1 HETATM 7 C CD1 SRO . . . I 5 139.044 139.025 142.95 1 22.74 ? CD1 SRO 905 A 1 HETATM 8 C CG SRO . . . I 5 137.862 138.684 142.302 1 22.74 ? CG SRO 905 A 1 HETATM 9 C CD2 SRO . . . I 5 136.887 139.631 142.719 1 22.74 ? CD2 SRO 905 A 1 HETATM 10 C CE3 SRO . . . I 5 135.515 139.824 142.424 1 22.74 ? CE3 SRO 905 A 1 HETATM 11 C CB SRO . . . I 5 137.655 137.521 141.334 1 22.74 ? CB SRO 905 A 1 HETATM 12 C CA SRO . . . I 5 137.834 136.163 142.011 1 22.74 ? CA SRO 905 A 1 HETATM 13 N NZ SRO . . . I 5 138.394 135.204 141.077 1 22.74 ? NZ SRO 905 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #