data_7LIA # _model_server_result.job_id T7lYZ2TPBma4FcYdwVQDMg _model_server_result.datetime_utc '2024-11-22 13:00:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":923}' # _entry.id 7LIA # _exptl.entry_id 7LIA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 142.282 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LIA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 V N N ? 8 W N N ? 8 AA N N ? 8 BA N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2502 NAG 4 n D NAG 2 D 2 NAG A 2503 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 A CYS 200 1_555 A SG CYS 131 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 23 C CYS 43 1_555 C SG CYS 92 C CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 130 A ASN 208 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? metalc ? metalc1 A O GLY 16 A GLY 94 1_555 H NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc2 A O ALA 18 A ALA 96 1_555 G NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc3 A O VAL 19 A VAL 97 1_555 H NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc4 A OD1 ASP 20 A ASP 98 1_555 G NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc5 A O SER 258 A SER 336 1_555 G NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? metalc ? metalc6 A OD2 ASP 359 A ASP 437 1_555 H NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 160 n n C1 H11 D10 sing 161 n n C1 H12 D10 sing 162 n n C1 H13 D10 sing 163 n n C2 C3 D10 sing 164 n n C2 H21 D10 sing 165 n n C2 H22 D10 sing 166 n n C3 C4 D10 sing 167 n n C3 H31 D10 sing 168 n n C3 H32 D10 sing 169 n n C4 C5 D10 sing 170 n n C4 H41 D10 sing 171 n n C4 H42 D10 sing 172 n n C5 C6 D10 sing 173 n n C5 H51 D10 sing 174 n n C5 H52 D10 sing 175 n n C6 C7 D10 sing 176 n n C6 H61 D10 sing 177 n n C6 H62 D10 sing 178 n n C7 C8 D10 sing 179 n n C7 H71 D10 sing 180 n n C7 H72 D10 sing 181 n n C8 C9 D10 sing 182 n n C8 H81 D10 sing 183 n n C8 H82 D10 sing 184 n n C9 C10 D10 sing 185 n n C9 H91 D10 sing 186 n n C9 H92 D10 sing 187 n n C10 H101 D10 sing 188 n n C10 H102 D10 sing 189 n n C10 H103 D10 sing 190 n n # _atom_sites.entry_id 7LIA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SRO A 1 901 901 SRO LIG . F 6 CL A 1 902 1001 CL CL . G 7 NA A 1 903 1101 NA NA . H 7 NA A 1 904 1201 NA NA . I 5 SRO A 1 905 1301 SRO LIG . J 8 D10 A 1 906 1404 D10 D10 . K 9 HP6 A 1 907 1405 HP6 HP6 . L 9 HP6 A 1 908 1406 HP6 HP6 . M 9 HP6 A 1 909 1407 HP6 HP6 . N 9 HP6 A 1 910 1408 HP6 HP6 . O 9 HP6 A 1 911 1409 HP6 HP6 . P 9 HP6 A 1 912 1410 HP6 HP6 . Q 9 HP6 A 1 913 1411 HP6 HP6 . R 9 HP6 A 1 914 1412 HP6 HP6 . S 9 HP6 A 1 915 1413 HP6 HP6 . T 9 HP6 A 1 916 1414 HP6 HP6 . U 10 LNK A 1 917 1501 LNK LNK . V 8 D10 A 1 918 1801 D10 D10 . W 8 D10 A 1 919 1901 D10 D10 . X 9 HP6 A 1 920 2001 HP6 HP6 . Y 9 HP6 A 1 921 2101 HP6 HP6 . Z 9 HP6 A 1 922 2201 HP6 HP6 . AA 8 D10 A 1 923 2301 D10 D10 . BA 8 D10 A 1 924 2401 D10 D10 . CA 11 CLR A 1 925 2501 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . AA 8 116.308 145.549 129.989 1 13.21 ? C1 D10 923 A 1 HETATM 2 C C2 D10 . . . AA 8 117.791 145.741 129.683 1 13.21 ? C2 D10 923 A 1 HETATM 3 C C3 D10 . . . AA 8 118.01 145.692 128.173 1 13.21 ? C3 D10 923 A 1 HETATM 4 C C4 D10 . . . AA 8 119.486 145.935 127.865 1 13.21 ? C4 D10 923 A 1 HETATM 5 C C5 D10 . . . AA 8 119.693 145.955 126.352 1 13.21 ? C5 D10 923 A 1 HETATM 6 C C6 D10 . . . AA 8 121.141 146.326 126.042 1 13.21 ? C6 D10 923 A 1 HETATM 7 C C7 D10 . . . AA 8 121.322 146.449 124.53 1 13.21 ? C7 D10 923 A 1 HETATM 8 C C8 D10 . . . AA 8 122.735 146.942 124.225 1 13.21 ? C8 D10 923 A 1 HETATM 9 C C9 D10 . . . AA 8 122.894 147.125 122.718 1 13.21 ? C9 D10 923 A 1 HETATM 10 C C10 D10 . . . AA 8 124.288 147.672 122.416 1 13.21 ? C10 D10 923 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #