data_7LIY # _model_server_result.job_id RwJFaxbDljF8OqUwCzouUw _model_server_result.datetime_utc '2025-02-05 12:03:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7liy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 7LIY # _exptl.entry_id 7LIY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 588.694 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOERYTHROBILIN _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LIY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 50 B CYS 50 1_555 F CAA PEB . B PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C MEN 72 B MEN 72 1_555 B N CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B SG CYS 158 B CYS 158 1_555 E CAA PEB . B PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? covale ? covale5 C SG CYS 50 C CYS 50 1_555 I CAA PEB . C PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? covale ? covale6 C SG CYS 61 C CYS 61 1_555 I CAD PEB . C PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale7 C C GLY 71 C GLY 71 1_555 C N MEN 72 C MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 C C MEN 72 C MEN 72 1_555 C N CYS 73 C CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 C SG CYS 82 C CYS 82 1_555 G CAA PEB . C PEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? covale ? covale10 C SG CYS 158 C CYS 158 1_555 H CAA PEB . C PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id PEB _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOERYTHROBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LIY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PEB B 1 201 203 PEB PEB . E 3 PEB B 1 202 204 PEB PEB . F 3 PEB B 1 203 205 PEB PEB . G 3 PEB C 1 201 203 PEB PEB . H 3 PEB C 1 202 204 PEB PEB . I 3 PEB C 1 203 205 PEB PEB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHC PEB . . . G 3 137.269 271.045 168.174 1 97.14 ? CHC PEB 201 C 1 HETATM 2 N NC PEB . . . G 3 139.625 270.427 167.277 1 97.14 ? NC PEB 201 C 1 HETATM 3 C C1C PEB . . . G 3 140.922 270.949 167.29 1 97.14 ? C1C PEB 201 C 1 HETATM 4 C C2C PEB . . . G 3 140.848 272.069 168.093 1 97.14 ? C2C PEB 201 C 1 HETATM 5 C C3C PEB . . . G 3 139.513 272.246 168.528 1 97.14 ? C3C PEB 201 C 1 HETATM 6 C C4C PEB . . . G 3 138.76 271.233 168.011 1 97.14 ? C4C PEB 201 C 1 HETATM 7 C CMC PEB . . . G 3 139.025 273.362 169.423 1 97.14 ? CMC PEB 201 C 1 HETATM 8 C CAC PEB . . . G 3 141.962 273.056 168.396 1 97.14 ? CAC PEB 201 C 1 HETATM 9 C CBC PEB . . . G 3 142.375 273.153 169.891 1 97.14 ? CBC PEB 201 C 1 HETATM 10 C CGC PEB . . . G 3 142.923 271.854 170.48 1 97.14 ? CGC PEB 201 C 1 HETATM 11 O O1C PEB . . . G 3 142.782 271.681 171.68 1 97.14 ? O1C PEB 201 C 1 HETATM 12 O O2C PEB . . . G 3 143.402 271.029 169.715 1 97.14 ? O2C PEB 201 C 1 HETATM 13 N ND PEB . . . G 3 137.129 271.038 170.68 1 97.14 ? ND PEB 201 C 1 HETATM 14 C C1D PEB . . . G 3 136.855 270.274 169.466 1 97.14 ? C1D PEB 201 C 1 HETATM 15 C C2D PEB . . . G 3 135.351 270.1 169.581 1 97.14 ? C2D PEB 201 C 1 HETATM 16 C C3D PEB . . . G 3 134.858 270.747 170.649 1 97.14 ? C3D PEB 201 C 1 HETATM 17 C C4D PEB . . . G 3 135.998 271.383 171.344 1 97.14 ? C4D PEB 201 C 1 HETATM 18 C CMD PEB . . . G 3 134.572 269.297 168.55 1 97.14 ? CMD PEB 201 C 1 HETATM 19 C CAD PEB . . . G 3 133.453 270.797 171.048 1 97.14 ? CAD PEB 201 C 1 HETATM 20 C CBD PEB . . . G 3 132.987 271.323 172.196 1 97.14 ? CBD PEB 201 C 1 HETATM 21 O OD PEB . . . G 3 135.978 272.071 172.346 1 97.14 ? OD PEB 201 C 1 HETATM 22 N NA PEB . . . G 3 142.034 265.783 161.909 1 97.14 ? NA PEB 201 C 1 HETATM 23 C C1A PEB . . . G 3 141.849 264.917 160.883 1 97.14 ? C1A PEB 201 C 1 HETATM 24 C C2A PEB . . . G 3 140.434 264.363 160.913 1 97.14 ? C2A PEB 201 C 1 HETATM 25 C C3A PEB . . . G 3 139.878 264.908 162.26 1 97.14 ? C3A PEB 201 C 1 HETATM 26 C C4A PEB . . . G 3 140.965 265.842 162.787 1 97.14 ? C4A PEB 201 C 1 HETATM 27 C CMA PEB . . . G 3 139.591 264.743 159.684 1 97.14 ? CMA PEB 201 C 1 HETATM 28 C CBA PEB . . . G 3 138.251 263.173 163.136 1 97.14 ? CBA PEB 201 C 1 HETATM 29 O OA PEB . . . G 3 142.707 264.66 160.062 1 97.14 ? OA PEB 201 C 1 HETATM 30 C CHA PEB . . . G 3 140.84 266.606 163.899 1 97.14 ? CHA PEB 201 C 1 HETATM 31 C CAA PEB . . . G 3 139.634 263.809 163.309 1 97.14 ? CAA PEB 201 C 1 HETATM 32 N NB PEB . . . G 3 141.2 268.517 165.303 1 97.14 ? NB PEB 201 C 1 HETATM 33 C C1B PEB . . . G 3 141.739 267.563 164.536 1 97.14 ? C1B PEB 201 C 1 HETATM 34 C C2B PEB . . . G 3 143.176 267.704 164.544 1 97.14 ? C2B PEB 201 C 1 HETATM 35 C C3B PEB . . . G 3 143.489 268.808 165.281 1 97.14 ? C3B PEB 201 C 1 HETATM 36 C C4B PEB . . . G 3 142.241 269.281 165.763 1 97.14 ? C4B PEB 201 C 1 HETATM 37 C CHB PEB . . . G 3 142.083 270.354 166.614 1 97.14 ? CHB PEB 201 C 1 HETATM 38 C CMB PEB . . . G 3 144.149 266.763 163.892 1 97.14 ? CMB PEB 201 C 1 HETATM 39 C CAB PEB . . . G 3 144.856 269.404 165.569 1 97.14 ? CAB PEB 201 C 1 HETATM 40 C CBB PEB . . . G 3 145.123 270.678 164.724 1 97.14 ? CBB PEB 201 C 1 HETATM 41 C CGB PEB . . . G 3 146.522 271.272 164.907 1 97.14 ? CGB PEB 201 C 1 HETATM 42 O O1B PEB . . . G 3 146.611 272.474 165.098 1 97.14 ? O1B PEB 201 C 1 HETATM 43 O O2B PEB . . . G 3 147.472 270.502 164.911 1 97.14 ? O2B PEB 201 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #