data_7LIY
#
_model_server_result.job_id            BFwigUTGbE9v3tTRM2yQ1A 
_model_server_result.datetime_utc      '2025-07-14 09:21:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7liy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    7LIY 
#
_exptl.entry_id    7LIY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOERYTHROBILIN 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LIY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LIY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 50 B CYS 50 1_555 F CAA PEB . B PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C MEN 72 B MEN 72 1_555 B N CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 B SG CYS 158 B CYS 158 1_555 E CAA PEB . B PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? 
covale ? covale5 C SG CYS 50 C CYS 50 1_555 I CAA PEB . C PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
covale ? covale6 C SG CYS 61 C CYS 61 1_555 I CAD PEB . C PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
covale ? covale7 C C GLY 71 C GLY 71 1_555 C N MEN 72 C MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 C C MEN 72 C MEN 72 1_555 C N CYS 73 C CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale9 C SG CYS 82 C CYS 82 1_555 G CAA PEB . C PEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? 
covale ? covale10 C SG CYS 158 C CYS 158 1_555 H CAA PEB . C PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                PEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOERYTHROBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHC C4C PEB sing 254 n n 
CHC C1D PEB sing 255 n n 
CHC HHC1 PEB sing 256 n n 
CHC HHC2 PEB sing 257 n n 
NC C1C PEB sing 258 n y 
NC C4C PEB sing 259 n y 
NC HNC PEB sing 260 n n 
C1C C2C PEB doub 261 n y 
C1C CHB PEB sing 262 n n 
C2C C3C PEB sing 263 n y 
C2C CAC PEB sing 264 n n 
C3C C4C PEB doub 265 n y 
C3C CMC PEB sing 266 n n 
CMC HMC1 PEB sing 267 n n 
CMC HMC2 PEB sing 268 n n 
CMC HMC3 PEB sing 269 n n 
CAC CBC PEB sing 270 n n 
CAC HAC1 PEB sing 271 n n 
CAC HAC2 PEB sing 272 n n 
CBC CGC PEB sing 273 n n 
CBC HBC1 PEB sing 274 n n 
CBC HBC2 PEB sing 275 n n 
CGC O1C PEB doub 276 n n 
CGC O2C PEB sing 277 n n 
O2C HOC2 PEB sing 278 n n 
ND C1D PEB sing 279 n n 
ND C4D PEB sing 280 n n 
ND HND PEB sing 281 n n 
C1D C2D PEB sing 282 n n 
C1D H1D1 PEB sing 283 n n 
C2D C3D PEB doub 284 n n 
C2D CMD PEB sing 285 n n 
C3D C4D PEB sing 286 n n 
C3D CAD PEB sing 287 n n 
C4D OD PEB doub 288 n n 
CMD HMD1 PEB sing 289 n n 
CMD HMD2 PEB sing 290 n n 
CMD HMD3 PEB sing 291 n n 
CAD CBD PEB doub 292 n n 
CAD HAD1 PEB sing 293 n n 
CBD HBD1 PEB sing 294 n n 
CBD HBD2 PEB sing 295 n n 
NA C1A PEB sing 296 n n 
NA C4A PEB sing 297 n n 
NA HNA PEB sing 298 n n 
C1A C2A PEB sing 299 n n 
C1A OA PEB doub 300 n n 
C2A C3A PEB sing 301 n n 
C2A CMA PEB sing 302 n n 
C2A H2A1 PEB sing 303 n n 
C3A C4A PEB sing 304 n n 
C3A CAA PEB sing 305 n n 
C3A H3A1 PEB sing 306 n n 
C4A CHA PEB doub 307 z n 
CMA HMA1 PEB sing 308 n n 
CMA HMA2 PEB sing 309 n n 
CMA HMA3 PEB sing 310 n n 
CBA CAA PEB sing 311 n n 
CBA HBA1 PEB sing 312 n n 
CBA HBA2 PEB sing 313 n n 
CBA HBA3 PEB sing 314 n n 
CHA C1B PEB sing 315 n n 
CHA HHA1 PEB sing 316 n n 
CAA HAA1 PEB sing 317 n n 
CAA HAA2 PEB sing 318 n n 
NB C1B PEB doub 319 n n 
NB C4B PEB sing 320 n n 
C1B C2B PEB sing 321 n n 
C2B C3B PEB doub 322 n n 
C2B CMB PEB sing 323 n n 
C3B C4B PEB sing 324 n n 
C3B CAB PEB sing 325 n n 
C4B CHB PEB doub 326 z n 
CHB HHB1 PEB sing 327 n n 
CMB HMB1 PEB sing 328 n n 
CMB HMB2 PEB sing 329 n n 
CMB HMB3 PEB sing 330 n n 
CAB CBB PEB sing 331 n n 
CAB HAB1 PEB sing 332 n n 
CAB HAB2 PEB sing 333 n n 
CBB CGB PEB sing 334 n n 
CBB HBB1 PEB sing 335 n n 
CBB HBB2 PEB sing 336 n n 
CGB O1B PEB doub 337 n n 
CGB O2B PEB sing 338 n n 
O2B HOB2 PEB sing 339 n n 
#
_atom_sites.entry_id                     7LIY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 PEB B 1 201 203 PEB PEB . 
E 3 PEB B 1 202 204 PEB PEB . 
F 3 PEB B 1 203 205 PEB PEB . 
G 3 PEB C 1 201 203 PEB PEB . 
H 3 PEB C 1 202 204 PEB PEB . 
I 3 PEB C 1 203 205 PEB PEB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHC PEB . . . G 3 137.269 271.045 168.174 1 97.14 ? CHC PEB 201 C 1 
HETATM 2 N NC PEB . . . G 3 139.625 270.427 167.277 1 97.14 ? NC PEB 201 C 1 
HETATM 3 C C1C PEB . . . G 3 140.922 270.949 167.29 1 97.14 ? C1C PEB 201 C 1 
HETATM 4 C C2C PEB . . . G 3 140.848 272.069 168.093 1 97.14 ? C2C PEB 201 C 1 
HETATM 5 C C3C PEB . . . G 3 139.513 272.246 168.528 1 97.14 ? C3C PEB 201 C 1 
HETATM 6 C C4C PEB . . . G 3 138.76 271.233 168.011 1 97.14 ? C4C PEB 201 C 1 
HETATM 7 C CMC PEB . . . G 3 139.025 273.362 169.423 1 97.14 ? CMC PEB 201 C 1 
HETATM 8 C CAC PEB . . . G 3 141.962 273.056 168.396 1 97.14 ? CAC PEB 201 C 1 
HETATM 9 C CBC PEB . . . G 3 142.375 273.153 169.891 1 97.14 ? CBC PEB 201 C 1 
HETATM 10 C CGC PEB . . . G 3 142.923 271.854 170.48 1 97.14 ? CGC PEB 201 C 1 
HETATM 11 O O1C PEB . . . G 3 142.782 271.681 171.68 1 97.14 ? O1C PEB 201 C 1 
HETATM 12 O O2C PEB . . . G 3 143.402 271.029 169.715 1 97.14 ? O2C PEB 201 C 1 
HETATM 13 N ND PEB . . . G 3 137.129 271.038 170.68 1 97.14 ? ND PEB 201 C 1 
HETATM 14 C C1D PEB . . . G 3 136.855 270.274 169.466 1 97.14 ? C1D PEB 201 C 1 
HETATM 15 C C2D PEB . . . G 3 135.351 270.1 169.581 1 97.14 ? C2D PEB 201 C 1 
HETATM 16 C C3D PEB . . . G 3 134.858 270.747 170.649 1 97.14 ? C3D PEB 201 C 1 
HETATM 17 C C4D PEB . . . G 3 135.998 271.383 171.344 1 97.14 ? C4D PEB 201 C 1 
HETATM 18 C CMD PEB . . . G 3 134.572 269.297 168.55 1 97.14 ? CMD PEB 201 C 1 
HETATM 19 C CAD PEB . . . G 3 133.453 270.797 171.048 1 97.14 ? CAD PEB 201 C 1 
HETATM 20 C CBD PEB . . . G 3 132.987 271.323 172.196 1 97.14 ? CBD PEB 201 C 1 
HETATM 21 O OD PEB . . . G 3 135.978 272.071 172.346 1 97.14 ? OD PEB 201 C 1 
HETATM 22 N NA PEB . . . G 3 142.034 265.783 161.909 1 97.14 ? NA PEB 201 C 1 
HETATM 23 C C1A PEB . . . G 3 141.849 264.917 160.883 1 97.14 ? C1A PEB 201 C 1 
HETATM 24 C C2A PEB . . . G 3 140.434 264.363 160.913 1 97.14 ? C2A PEB 201 C 1 
HETATM 25 C C3A PEB . . . G 3 139.878 264.908 162.26 1 97.14 ? C3A PEB 201 C 1 
HETATM 26 C C4A PEB . . . G 3 140.965 265.842 162.787 1 97.14 ? C4A PEB 201 C 1 
HETATM 27 C CMA PEB . . . G 3 139.591 264.743 159.684 1 97.14 ? CMA PEB 201 C 1 
HETATM 28 C CBA PEB . . . G 3 138.251 263.173 163.136 1 97.14 ? CBA PEB 201 C 1 
HETATM 29 O OA PEB . . . G 3 142.707 264.66 160.062 1 97.14 ? OA PEB 201 C 1 
HETATM 30 C CHA PEB . . . G 3 140.84 266.606 163.899 1 97.14 ? CHA PEB 201 C 1 
HETATM 31 C CAA PEB . . . G 3 139.634 263.809 163.309 1 97.14 ? CAA PEB 201 C 1 
HETATM 32 N NB PEB . . . G 3 141.2 268.517 165.303 1 97.14 ? NB PEB 201 C 1 
HETATM 33 C C1B PEB . . . G 3 141.739 267.563 164.536 1 97.14 ? C1B PEB 201 C 1 
HETATM 34 C C2B PEB . . . G 3 143.176 267.704 164.544 1 97.14 ? C2B PEB 201 C 1 
HETATM 35 C C3B PEB . . . G 3 143.489 268.808 165.281 1 97.14 ? C3B PEB 201 C 1 
HETATM 36 C C4B PEB . . . G 3 142.241 269.281 165.763 1 97.14 ? C4B PEB 201 C 1 
HETATM 37 C CHB PEB . . . G 3 142.083 270.354 166.614 1 97.14 ? CHB PEB 201 C 1 
HETATM 38 C CMB PEB . . . G 3 144.149 266.763 163.892 1 97.14 ? CMB PEB 201 C 1 
HETATM 39 C CAB PEB . . . G 3 144.856 269.404 165.569 1 97.14 ? CAB PEB 201 C 1 
HETATM 40 C CBB PEB . . . G 3 145.123 270.678 164.724 1 97.14 ? CBB PEB 201 C 1 
HETATM 41 C CGB PEB . . . G 3 146.522 271.272 164.907 1 97.14 ? CGB PEB 201 C 1 
HETATM 42 O O1B PEB . . . G 3 146.611 272.474 165.098 1 97.14 ? O1B PEB 201 C 1 
HETATM 43 O O2B PEB . . . G 3 147.472 270.502 164.911 1 97.14 ? O2B PEB 201 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#