data_7LIZ
#
_model_server_result.job_id            5k2C-kMIbPk4Xpqk1AE2gg 
_model_server_result.datetime_utc      '2025-07-15 13:34:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7liz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":203}' 
#
_entry.id    7LIZ 
#
_exptl.entry_id    7LIZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOERYTHROBILIN 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LIZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LIZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 50 B CYS 50 1_555 F CAA PEB . B PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? 
covale ? covale2 B SG CYS 61 B CYS 61 1_555 F CAD PEB . B PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? 
covale ? covale3 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 B C MEN 72 B MEN 72 1_555 B N CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 B SG CYS 82 B CYS 82 1_555 D CAA PEB . B PEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
covale ? covale6 B SG CYS 158 B CYS 158 1_555 E CAA PEB . B PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
covale ? covale7 C SG CYS 50 C CYS 50 1_555 I CAA PEB . C PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? 
covale ? covale8 C SG CYS 61 C CYS 61 1_555 I CAD PEB . C PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? 
covale ? covale9 C C GLY 71 C GLY 71 1_555 C N MEN 72 C MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 C C MEN 72 C MEN 72 1_555 C N CYS 73 C CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 C SG CYS 82 C CYS 82 1_555 G CAA PEB . C PEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
covale ? covale12 C SG CYS 158 C CYS 158 1_555 H CAA PEB . C PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                PEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOERYTHROBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHC C4C PEB sing 254 n n 
CHC C1D PEB sing 255 n n 
CHC HHC1 PEB sing 256 n n 
CHC HHC2 PEB sing 257 n n 
NC C1C PEB sing 258 n y 
NC C4C PEB sing 259 n y 
NC HNC PEB sing 260 n n 
C1C C2C PEB doub 261 n y 
C1C CHB PEB sing 262 n n 
C2C C3C PEB sing 263 n y 
C2C CAC PEB sing 264 n n 
C3C C4C PEB doub 265 n y 
C3C CMC PEB sing 266 n n 
CMC HMC1 PEB sing 267 n n 
CMC HMC2 PEB sing 268 n n 
CMC HMC3 PEB sing 269 n n 
CAC CBC PEB sing 270 n n 
CAC HAC1 PEB sing 271 n n 
CAC HAC2 PEB sing 272 n n 
CBC CGC PEB sing 273 n n 
CBC HBC1 PEB sing 274 n n 
CBC HBC2 PEB sing 275 n n 
CGC O1C PEB doub 276 n n 
CGC O2C PEB sing 277 n n 
O2C HOC2 PEB sing 278 n n 
ND C1D PEB sing 279 n n 
ND C4D PEB sing 280 n n 
ND HND PEB sing 281 n n 
C1D C2D PEB sing 282 n n 
C1D H1D1 PEB sing 283 n n 
C2D C3D PEB doub 284 n n 
C2D CMD PEB sing 285 n n 
C3D C4D PEB sing 286 n n 
C3D CAD PEB sing 287 n n 
C4D OD PEB doub 288 n n 
CMD HMD1 PEB sing 289 n n 
CMD HMD2 PEB sing 290 n n 
CMD HMD3 PEB sing 291 n n 
CAD CBD PEB doub 292 n n 
CAD HAD1 PEB sing 293 n n 
CBD HBD1 PEB sing 294 n n 
CBD HBD2 PEB sing 295 n n 
NA C1A PEB sing 296 n n 
NA C4A PEB sing 297 n n 
NA HNA PEB sing 298 n n 
C1A C2A PEB sing 299 n n 
C1A OA PEB doub 300 n n 
C2A C3A PEB sing 301 n n 
C2A CMA PEB sing 302 n n 
C2A H2A1 PEB sing 303 n n 
C3A C4A PEB sing 304 n n 
C3A CAA PEB sing 305 n n 
C3A H3A1 PEB sing 306 n n 
C4A CHA PEB doub 307 z n 
CMA HMA1 PEB sing 308 n n 
CMA HMA2 PEB sing 309 n n 
CMA HMA3 PEB sing 310 n n 
CBA CAA PEB sing 311 n n 
CBA HBA1 PEB sing 312 n n 
CBA HBA2 PEB sing 313 n n 
CBA HBA3 PEB sing 314 n n 
CHA C1B PEB sing 315 n n 
CHA HHA1 PEB sing 316 n n 
CAA HAA1 PEB sing 317 n n 
CAA HAA2 PEB sing 318 n n 
NB C1B PEB doub 319 n n 
NB C4B PEB sing 320 n n 
C1B C2B PEB sing 321 n n 
C2B C3B PEB doub 322 n n 
C2B CMB PEB sing 323 n n 
C3B C4B PEB sing 324 n n 
C3B CAB PEB sing 325 n n 
C4B CHB PEB doub 326 z n 
CHB HHB1 PEB sing 327 n n 
CMB HMB1 PEB sing 328 n n 
CMB HMB2 PEB sing 329 n n 
CMB HMB3 PEB sing 330 n n 
CAB CBB PEB sing 331 n n 
CAB HAB1 PEB sing 332 n n 
CAB HAB2 PEB sing 333 n n 
CBB CGB PEB sing 334 n n 
CBB HBB1 PEB sing 335 n n 
CBB HBB2 PEB sing 336 n n 
CGB O1B PEB doub 337 n n 
CGB O2B PEB sing 338 n n 
O2B HOB2 PEB sing 339 n n 
#
_atom_sites.entry_id                     7LIZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 PEB B 1 201 203 PEB PEB . 
E 3 PEB B 1 202 204 PEB PEB . 
F 3 PEB B 1 203 205 PEB PEB . 
G 3 PEB C 1 201 203 PEB PEB . 
H 3 PEB C 1 202 204 PEB PEB . 
I 3 PEB C 1 203 205 PEB PEB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHC PEB . . . I 3 295.365 438.614 319.855 1 64.32 ? CHC PEB 203 C 1 
HETATM 2 N NC PEB . . . I 3 295.58 440.589 321.474 1 64.32 ? NC PEB 203 C 1 
HETATM 3 C C1C PEB . . . I 3 296.218 441.783 321.506 1 64.32 ? C1C PEB 203 C 1 
HETATM 4 C C2C PEB . . . I 3 296.92 441.922 320.339 1 64.32 ? C2C PEB 203 C 1 
HETATM 5 C C3C PEB . . . I 3 296.708 440.808 319.598 1 64.32 ? C3C PEB 203 C 1 
HETATM 6 C C4C PEB . . . I 3 295.871 439.983 320.305 1 64.32 ? C4C PEB 203 C 1 
HETATM 7 C CMC PEB . . . I 3 297.252 440.472 318.208 1 64.32 ? CMC PEB 203 C 1 
HETATM 8 C CAC PEB . . . I 3 297.771 443.144 319.983 1 64.32 ? CAC PEB 203 C 1 
HETATM 9 C CBC PEB . . . I 3 299.069 443.15 320.792 1 64.32 ? CBC PEB 203 C 1 
HETATM 10 C CGC PEB . . . I 3 300.14 442.309 320.1 1 64.32 ? CGC PEB 203 C 1 
HETATM 11 O O1C PEB . . . I 3 299.828 441.54 319.159 1 64.32 ? O1C PEB 203 C 1 
HETATM 12 O O2C PEB . . . I 3 301.342 442.385 320.471 1 64.32 ? O2C PEB 203 C 1 
HETATM 13 N ND PEB . . . I 3 293.581 440.052 318.844 1 64.32 ? ND PEB 203 C 1 
HETATM 14 C C1D PEB . . . I 3 293.955 438.679 319.444 1 64.32 ? C1D PEB 203 C 1 
HETATM 15 C C2D PEB . . . I 3 293.729 437.715 318.347 1 64.32 ? C2D PEB 203 C 1 
HETATM 16 C C3D PEB . . . I 3 293.466 438.392 317.122 1 64.32 ? C3D PEB 203 C 1 
HETATM 17 C C4D PEB . . . I 3 293.275 439.823 317.38 1 64.32 ? C4D PEB 203 C 1 
HETATM 18 C CMD PEB . . . I 3 293.075 436.378 318.677 1 64.32 ? CMD PEB 203 C 1 
HETATM 19 C CAD PEB . . . I 3 292.685 437.722 315.987 1 64.32 ? CAD PEB 203 C 1 
HETATM 20 C CBD PEB . . . I 3 291.376 437.771 315.971 1 64.32 ? CBD PEB 203 C 1 
HETATM 21 O OD PEB . . . I 3 292.951 440.647 316.595 1 64.32 ? OD PEB 203 C 1 
HETATM 22 N NA PEB . . . I 3 293.224 441.723 327.839 1 64.32 ? NA PEB 203 C 1 
HETATM 23 C C1A PEB . . . I 3 292.198 441.611 328.937 1 64.32 ? C1A PEB 203 C 1 
HETATM 24 C C2A PEB . . . I 3 292.009 440.104 329.264 1 64.32 ? C2A PEB 203 C 1 
HETATM 25 C C3A PEB . . . I 3 293.138 439.465 328.684 1 64.32 ? C3A PEB 203 C 1 
HETATM 26 C C4A PEB . . . I 3 293.643 440.422 327.506 1 64.32 ? C4A PEB 203 C 1 
HETATM 27 C CMA PEB . . . I 3 292.01 439.915 330.803 1 64.32 ? CMA PEB 203 C 1 
HETATM 28 C CBA PEB . . . I 3 292.049 438.114 326.805 1 64.32 ? CBA PEB 203 C 1 
HETATM 29 O OA PEB . . . I 3 291.644 442.517 329.459 1 64.32 ? OA PEB 203 C 1 
HETATM 30 C CHA PEB . . . I 3 294.624 440.125 326.684 1 64.32 ? CHA PEB 203 C 1 
HETATM 31 C CAA PEB . . . I 3 292.811 438.071 328.134 1 64.32 ? CAA PEB 203 C 1 
HETATM 32 N NB PEB . . . I 3 295.224 441.223 324.339 1 64.32 ? NB PEB 203 C 1 
HETATM 33 C C1B PEB . . . I 3 295.265 441.2 325.817 1 64.32 ? C1B PEB 203 C 1 
HETATM 34 C C2B PEB . . . I 3 296.029 442.372 326.312 1 64.32 ? C2B PEB 203 C 1 
HETATM 35 C C3B PEB . . . I 3 296.47 443.139 325.144 1 64.32 ? C3B PEB 203 C 1 
HETATM 36 C C4B PEB . . . I 3 295.979 442.442 323.875 1 64.32 ? C4B PEB 203 C 1 
HETATM 37 C CHB PEB . . . I 3 296.177 442.817 322.63 1 64.32 ? CHB PEB 203 C 1 
HETATM 38 C CMB PEB . . . I 3 296.297 442.709 327.775 1 64.32 ? CMB PEB 203 C 1 
HETATM 39 C CAB PEB . . . I 3 297.291 444.42 325.201 1 64.32 ? CAB PEB 203 C 1 
HETATM 40 C CBB PEB . . . I 3 296.365 445.633 325.168 1 64.32 ? CBB PEB 203 C 1 
HETATM 41 C CGB PEB . . . I 3 297.207 446.907 325.134 1 64.32 ? CGB PEB 203 C 1 
HETATM 42 O O1B PEB . . . I 3 296.648 448.035 325.125 1 64.32 ? O1B PEB 203 C 1 
HETATM 43 O O2B PEB . . . I 3 298.464 446.835 325.113 1 64.32 ? O2B PEB 203 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#