data_7LJ0
#
_model_server_result.job_id            LEfite0tvvYNsPytcf1F9Q 
_model_server_result.datetime_utc      '2025-07-14 06:14:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lj0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    7LJ0 
#
_exptl.entry_id    7LJ0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOERYTHROBILIN 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LJ0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LJ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 50 B CYS 50 1_555 E CAA PEB . B PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
covale ? covale2 B SG CYS 61 B CYS 61 1_555 E CAD PEB . B PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? 
covale ? covale3 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C MEN 72 B MEN 72 1_555 B N CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 B SG CYS 82 B CYS 82 1_555 C CAA PEB . B PEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? 
covale ? covale6 B SG CYS 158 B CYS 158 1_555 D CAA PEB . B PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                PEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOERYTHROBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHC C4C PEB sing 254 n n 
CHC C1D PEB sing 255 n n 
CHC HHC1 PEB sing 256 n n 
CHC HHC2 PEB sing 257 n n 
NC C1C PEB sing 258 n y 
NC C4C PEB sing 259 n y 
NC HNC PEB sing 260 n n 
C1C C2C PEB doub 261 n y 
C1C CHB PEB sing 262 n n 
C2C C3C PEB sing 263 n y 
C2C CAC PEB sing 264 n n 
C3C C4C PEB doub 265 n y 
C3C CMC PEB sing 266 n n 
CMC HMC1 PEB sing 267 n n 
CMC HMC2 PEB sing 268 n n 
CMC HMC3 PEB sing 269 n n 
CAC CBC PEB sing 270 n n 
CAC HAC1 PEB sing 271 n n 
CAC HAC2 PEB sing 272 n n 
CBC CGC PEB sing 273 n n 
CBC HBC1 PEB sing 274 n n 
CBC HBC2 PEB sing 275 n n 
CGC O1C PEB doub 276 n n 
CGC O2C PEB sing 277 n n 
O2C HOC2 PEB sing 278 n n 
ND C1D PEB sing 279 n n 
ND C4D PEB sing 280 n n 
ND HND PEB sing 281 n n 
C1D C2D PEB sing 282 n n 
C1D H1D1 PEB sing 283 n n 
C2D C3D PEB doub 284 n n 
C2D CMD PEB sing 285 n n 
C3D C4D PEB sing 286 n n 
C3D CAD PEB sing 287 n n 
C4D OD PEB doub 288 n n 
CMD HMD1 PEB sing 289 n n 
CMD HMD2 PEB sing 290 n n 
CMD HMD3 PEB sing 291 n n 
CAD CBD PEB doub 292 n n 
CAD HAD1 PEB sing 293 n n 
CBD HBD1 PEB sing 294 n n 
CBD HBD2 PEB sing 295 n n 
NA C1A PEB sing 296 n n 
NA C4A PEB sing 297 n n 
NA HNA PEB sing 298 n n 
C1A C2A PEB sing 299 n n 
C1A OA PEB doub 300 n n 
C2A C3A PEB sing 301 n n 
C2A CMA PEB sing 302 n n 
C2A H2A1 PEB sing 303 n n 
C3A C4A PEB sing 304 n n 
C3A CAA PEB sing 305 n n 
C3A H3A1 PEB sing 306 n n 
C4A CHA PEB doub 307 z n 
CMA HMA1 PEB sing 308 n n 
CMA HMA2 PEB sing 309 n n 
CMA HMA3 PEB sing 310 n n 
CBA CAA PEB sing 311 n n 
CBA HBA1 PEB sing 312 n n 
CBA HBA2 PEB sing 313 n n 
CBA HBA3 PEB sing 314 n n 
CHA C1B PEB sing 315 n n 
CHA HHA1 PEB sing 316 n n 
CAA HAA1 PEB sing 317 n n 
CAA HAA2 PEB sing 318 n n 
NB C1B PEB doub 319 n n 
NB C4B PEB sing 320 n n 
C1B C2B PEB sing 321 n n 
C2B C3B PEB doub 322 n n 
C2B CMB PEB sing 323 n n 
C3B C4B PEB sing 324 n n 
C3B CAB PEB sing 325 n n 
C4B CHB PEB doub 326 z n 
CHB HHB1 PEB sing 327 n n 
CMB HMB1 PEB sing 328 n n 
CMB HMB2 PEB sing 329 n n 
CMB HMB3 PEB sing 330 n n 
CAB CBB PEB sing 331 n n 
CAB HAB1 PEB sing 332 n n 
CAB HAB2 PEB sing 333 n n 
CBB CGB PEB sing 334 n n 
CBB HBB1 PEB sing 335 n n 
CBB HBB2 PEB sing 336 n n 
CGB O1B PEB doub 337 n n 
CGB O2B PEB sing 338 n n 
O2B HOB2 PEB sing 339 n n 
#
_atom_sites.entry_id                     7LJ0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PEB B 1 201 208 PEB PEB . 
D 3 PEB B 1 202 209 PEB PEB . 
E 3 PEB B 1 203 210 PEB PEB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHC PEB . . . D 3 330.956 415.948 361.839 1 19.66 ? CHC PEB 202 B 1 
HETATM 2 N NC PEB . . . D 3 329.174 417.773 361.547 1 20.84 ? NC PEB 202 B 1 
HETATM 3 C C1C PEB . . . D 3 327.862 417.872 361.777 1 22.35 ? C1C PEB 202 B 1 
HETATM 4 C C2C PEB . . . D 3 327.249 416.675 362.336 1 18.92 ? C2C PEB 202 B 1 
HETATM 5 C C3C PEB . . . D 3 328.373 415.752 362.451 1 18.62 ? C3C PEB 202 B 1 
HETATM 6 C C4C PEB . . . D 3 329.543 416.498 361.906 1 21.72 ? C4C PEB 202 B 1 
HETATM 7 C CMC PEB . . . D 3 328.269 414.34 362.995 1 18.01 ? CMC PEB 202 B 1 
HETATM 8 C CAC PEB . . . D 3 325.817 416.52 362.759 1 22.5 ? CAC PEB 202 B 1 
HETATM 9 C CBC PEB . . . D 3 324.993 416.443 361.484 1 31.81 ? CBC PEB 202 B 1 
HETATM 10 C CGC PEB . . . D 3 325.158 415.064 360.934 1 38.51 ? CGC PEB 202 B 1 
HETATM 11 O O1C PEB . . . D 3 325.289 414.964 359.699 1 42.29 ? O1C PEB 202 B 1 
HETATM 12 O O2C PEB . . . D 3 325.114 414.093 361.728 1 44.56 ? O2C PEB 202 B 1 
HETATM 13 N ND PEB . . . D 3 331.124 415.367 364.252 1 18.85 ? ND PEB 202 B 1 
HETATM 14 C C1D PEB . . . D 3 331.787 416.07 363.128 1 18.01 ? C1D PEB 202 B 1 
HETATM 15 C C2D PEB . . . D 3 333.053 415.303 362.949 1 16.9 ? C2D PEB 202 B 1 
HETATM 16 C C3D PEB . . . D 3 333.138 414.127 363.784 1 17.24 ? C3D PEB 202 B 1 
HETATM 17 C C4D PEB . . . D 3 331.897 414.253 364.571 1 17.64 ? C4D PEB 202 B 1 
HETATM 18 C CMD PEB . . . D 3 334.067 415.708 361.896 1 17.81 ? CMD PEB 202 B 1 
HETATM 19 C CAD PEB . . . D 3 334.251 413.158 363.924 1 19.12 ? CAD PEB 202 B 1 
HETATM 20 C CBD PEB . . . D 3 334.212 412.326 364.96 1 21.82 ? CBD PEB 202 B 1 
HETATM 21 O OD PEB . . . D 3 331.603 413.412 365.516 1 19.56 ? OD PEB 202 B 1 
HETATM 22 N NA PEB . . . D 3 328.968 424.058 358.142 1 21.07 ? NA PEB 202 B 1 
HETATM 23 C C1A PEB . . . D 3 329.311 424.933 357.226 1 22.32 ? C1A PEB 202 B 1 
HETATM 24 C C2A PEB . . . D 3 330.64 425.509 357.586 1 20.69 ? C2A PEB 202 B 1 
HETATM 25 C C3A PEB . . . D 3 331.233 424.453 358.541 1 17.69 ? C3A PEB 202 B 1 
HETATM 26 C C4A PEB . . . D 3 330.004 423.707 358.951 1 18.26 ? C4A PEB 202 B 1 
HETATM 27 C CMA PEB . . . D 3 331.499 425.765 356.373 1 22.39 ? CMA PEB 202 B 1 
HETATM 28 C CBA PEB . . . D 3 332.911 424.177 360.43 1 18.55 ? CBA PEB 202 B 1 
HETATM 29 O OA PEB . . . D 3 328.656 425.284 356.22 1 24.68 ? OA PEB 202 B 1 
HETATM 30 C CHA PEB . . . D 3 329.928 422.777 359.948 1 19.89 ? CHA PEB 202 B 1 
HETATM 31 C CAA PEB . . . D 3 332.035 425.149 359.641 1 20.17 ? CAA PEB 202 B 1 
HETATM 32 N NB PEB . . . D 3 328.759 420.73 360.772 1 21.09 ? NB PEB 202 B 1 
HETATM 33 C C1B PEB . . . D 3 328.683 422.037 360.35 1 21.46 ? C1B PEB 202 B 1 
HETATM 34 C C2B PEB . . . D 3 327.302 422.614 360.476 1 22.1 ? C2B PEB 202 B 1 
HETATM 35 C C3B PEB . . . D 3 326.509 421.494 360.95 1 21.46 ? C3B PEB 202 B 1 
HETATM 36 C C4B PEB . . . D 3 327.484 420.407 361.098 1 20.83 ? C4B PEB 202 B 1 
HETATM 37 C CHB PEB . . . D 3 327.043 419.067 361.506 1 25.57 ? CHB PEB 202 B 1 
HETATM 38 C CMB PEB . . . D 3 326.824 424.022 360.183 1 24.6 ? CMB PEB 202 B 1 
HETATM 39 C CAB PEB . . . D 3 325.036 421.433 361.232 1 22.76 ? CAB PEB 202 B 1 
HETATM 40 C CBB PEB . . . D 3 324.743 421.958 362.626 1 25.37 ? CBB PEB 202 B 1 
HETATM 41 C CGB PEB . . . D 3 325.103 421.006 363.751 1 28.4 ? CGB PEB 202 B 1 
HETATM 42 O O1B PEB . . . D 3 324.9 419.749 363.718 1 30.96 ? O1B PEB 202 B 1 
HETATM 43 O O2B PEB . . . D 3 325.578 421.582 364.742 1 28.96 ? O2B PEB 202 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#