data_7LJD # _model_server_result.job_id WOeg-ILvt7mbpUKyroiH4w _model_server_result.datetime_utc '2024-11-21 14:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ljd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 7LJD # _exptl.entry_id 7LJD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 153.178 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-DOPAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LJD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 144 R CYS 96 1_555 A SG CYS 234 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 346 R CYS 298 1_555 A SG CYS 355 R CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 E SG CYS 23 N CYS 22 1_555 E SG CYS 97 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 E SG CYS 100 N CYS 99 1_555 E SG CYS 108 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C8 H11 N O2' _chem_comp.formula_weight 153.178 _chem_comp.id LDP _chem_comp.mon_nstd_flag . _chem_comp.name L-DOPAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C1 LDP sing 309 n n C7 C8 LDP sing 310 n n C7 H71 LDP sing 311 n n C7 H72 LDP sing 312 n n C1 C2 LDP doub 313 n y C1 C6 LDP sing 314 n y C4 C5 LDP sing 315 n y C4 C3 LDP doub 316 n y C4 O2 LDP sing 317 n n C2 C3 LDP sing 318 n y C2 H2 LDP sing 319 n n C6 C5 LDP doub 320 n y C6 H6 LDP sing 321 n n C5 H5 LDP sing 322 n n C3 O1 LDP sing 323 n n O1 HO1 LDP sing 324 n n O2 HO2 LDP sing 325 n n C8 N1 LDP sing 326 n n C8 H81 LDP sing 327 n n C8 H82 LDP sing 328 n n N1 HN11 LDP sing 329 n n N1 HN12 LDP sing 330 n n # _atom_sites.entry_id 7LJD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 LDP R 1 501 501 LDP LDP . G 7 G4C R 1 502 510 G4C LY8 . H 8 CLR R 1 503 609 CLR CLR . I 8 CLR R 1 504 610 CLR CLR . J 8 CLR R 1 505 611 CLR CLR . K 8 CLR R 1 506 612 CLR CLR . L 8 CLR R 1 507 614 CLR CLR . M 9 PLM R 1 508 616 PLM PLM . N 9 PLM R 1 509 617 PLM PLM . O 9 PLM R 1 510 618 PLM PLM . P 9 PLM R 1 511 620 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 LDP . . . F 6 92.369 107.017 77.617 0.5 40.16 ? C7 LDP 501 R 1 HETATM 2 C C1 LDP . . . F 6 91.428 107.727 78.56 0.5 40.16 ? C1 LDP 501 R 1 HETATM 3 C C4 LDP . . . F 6 89.691 109.042 80.292 0.5 40.16 ? C4 LDP 501 R 1 HETATM 4 C C2 LDP . . . F 6 90.638 108.778 78.099 0.5 40.16 ? C2 LDP 501 R 1 HETATM 5 C C6 LDP . . . F 6 91.332 107.353 79.892 0.5 40.16 ? C6 LDP 501 R 1 HETATM 6 C C5 LDP . . . F 6 90.473 108 80.758 0.5 40.16 ? C5 LDP 501 R 1 HETATM 7 C C3 LDP . . . F 6 89.772 109.435 78.955 0.5 40.16 ? C3 LDP 501 R 1 HETATM 8 O O1 LDP . . . F 6 88.981 110.47 78.54 0.5 40.16 ? O1 LDP 501 R 1 HETATM 9 O O2 LDP . . . F 6 88.831 109.707 81.115 0.5 40.16 ? O2 LDP 501 R 1 HETATM 10 C C8 LDP . . . F 6 93.634 106.503 78.363 0.5 40.16 ? C8 LDP 501 R 1 HETATM 11 N N1 LDP . . . F 6 94.524 105.832 77.47 0.5 40.16 ? N1 LDP 501 R 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #