data_7LK4 # _model_server_result.job_id XVn3XltsVZWcHf5qL4kdYg _model_server_result.datetime_utc '2025-04-02 02:04:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":201}' # _entry.id 7LK4 # _exptl.entry_id 7LK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.79 _cell.angle_gamma 90 _cell.entry_id 7LK4 _cell.length_a 57.17 _cell.length_b 271.8 _cell.length_c 74.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,M,N,O,T,V,W 1 1 B,D,G,H,K,L,P,Q,R,S,U,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 25 A CYS 23 1_555 E SG CYS 90 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 F SG CYS 24 B CYS 22 1_555 F SG CYS 98 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 G SG CYS 25 C CYS 23 1_555 G SG CYS 90 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 H SG CYS 24 D CYS 22 1_555 H SG CYS 98 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 I SG CYS 25 E CYS 23 1_555 I SG CYS 90 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 J SG CYS 24 F CYS 22 1_555 J SG CYS 98 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 K SG CYS 25 G CYS 23 1_555 K SG CYS 90 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 L SG CYS 24 H CYS 22 1_555 L SG CYS 98 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 7LK4 _atom_sites.fract_transf_matrix[1][1] 0.017492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000547 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 MPD A 1 201 1 MPD MPD . N 4 MPD A 1 202 3 MPD MPD . O 4 MPD B 1 201 8 MPD MPD . P 4 MPD C 1 201 2 MPD MPD . Q 4 MPD C 1 202 7 MPD MPD . R 4 MPD C 1 203 9 MPD MPD . S 4 MPD D 1 201 4 MPD MPD . T 5 HOH R 1 201 5 HOH HOH . U 5 HOH S 1 201 13 HOH HOH . U 5 HOH S 2 202 31 HOH HOH . U 5 HOH S 3 203 1 HOH HOH . U 5 HOH S 4 204 8 HOH HOH . V 5 HOH A 1 301 26 HOH HOH . V 5 HOH A 2 302 18 HOH HOH . W 5 HOH B 1 301 16 HOH HOH . X 5 HOH C 1 301 14 HOH HOH . X 5 HOH C 2 302 29 HOH HOH . X 5 HOH C 3 303 4 HOH HOH . Y 5 HOH D 1 301 20 HOH HOH . Y 5 HOH D 2 302 27 HOH HOH . Y 5 HOH D 3 303 21 HOH HOH . Y 5 HOH D 4 304 6 HOH HOH . Y 5 HOH D 5 305 22 HOH HOH . Z 5 HOH H 1 201 9 HOH HOH . Z 5 HOH H 2 202 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . P 4 -19.435 146.658 -9.535 1 31.01 ? C1 MPD 201 C 1 HETATM 2 C C2 MPD . . . P 4 -19.679 146.727 -11.038 1 58.64 ? C2 MPD 201 C 1 HETATM 3 O O2 MPD . . . P 4 -20.341 147.987 -11.313 1 82.76 ? O2 MPD 201 C 1 HETATM 4 C CM MPD . . . P 4 -18.358 146.691 -11.799 1 62.3 ? CM MPD 201 C 1 HETATM 5 C C3 MPD . . . P 4 -20.591 145.587 -11.484 1 59.73 ? C3 MPD 201 C 1 HETATM 6 C C4 MPD . . . P 4 -20.814 145.59 -12.994 1 54.29 ? C4 MPD 201 C 1 HETATM 7 O O4 MPD . . . P 4 -20.839 144.259 -13.462 1 59.37 ? O4 MPD 201 C 1 HETATM 8 C C5 MPD . . . P 4 -22.105 146.293 -13.399 1 44.61 ? C5 MPD 201 C 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #