data_7LKP # _model_server_result.job_id 7XXkG3A_6IQm7ARPQR4fpA _model_server_result.datetime_utc '2024-11-29 22:00:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2307}' # _entry.id 7LKP # _exptl.entry_id 7LKP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LKP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 L N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing 6 ? 3 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2 NAG 2 n B NAG 2 B 2 NAG B 3 NAG 2 n B BMA 3 B 3 BMA B 4 BMA 3 n C NAG 1 C 1 NAG B 8 NAG 3 n C NAG 2 C 2 NAG B 9 NAG 3 n C BMA 3 C 3 BMA B 10 BMA 3 n C BMA 4 C 4 BMA B 11 BMA 3 n C BMA 5 C 5 BMA B 12 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 324 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 370 A CYS 370 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 641 A CYS 641 1_555 A SG CYS 1490 A CYS 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 1444 A CYS 1444 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 1488 A CYS 1488 1_555 A SG CYS 1502 A CYS 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 98 A ASN 98 1_555 I C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 415 A ASN 415 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 444 A ASN 444 1_555 D C1 NAG . A NAG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 504 A ASN 504 1_555 E C1 NAG . A NAG 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A ND2 ASN 1469 A ASN 1469 1_555 F C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 A ND2 ASN 1529 A ASN 1529 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale7 A ND2 ASN 1588 A ASN 1588 1_555 G C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 A ND2 ASN 1662 A ASN 1662 1_555 H C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale10 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 281 n n C1 C10 CLR sing 282 n n C1 H11 CLR sing 283 n n C1 H12 CLR sing 284 n n C2 C3 CLR sing 285 n n C2 H21 CLR sing 286 n n C2 H22 CLR sing 287 n n C3 C4 CLR sing 288 n n C3 O1 CLR sing 289 n n C3 H3 CLR sing 290 n n C4 C5 CLR sing 291 n n C4 H41 CLR sing 292 n n C4 H42 CLR sing 293 n n C5 C6 CLR doub 294 n n C5 C10 CLR sing 295 n n C6 C7 CLR sing 296 n n C6 H6 CLR sing 297 n n C7 C8 CLR sing 298 n n C7 H71 CLR sing 299 n n C7 H72 CLR sing 300 n n C8 C9 CLR sing 301 n n C8 C14 CLR sing 302 n n C8 H8 CLR sing 303 n n C9 C10 CLR sing 304 n n C9 C11 CLR sing 305 n n C9 H9 CLR sing 306 n n C10 C19 CLR sing 307 n n C11 C12 CLR sing 308 n n C11 H111 CLR sing 309 n n C11 H112 CLR sing 310 n n C12 C13 CLR sing 311 n n C12 H121 CLR sing 312 n n C12 H122 CLR sing 313 n n C13 C14 CLR sing 314 n n C13 C17 CLR sing 315 n n C13 C18 CLR sing 316 n n C14 C15 CLR sing 317 n n C14 H14 CLR sing 318 n n C15 C16 CLR sing 319 n n C15 H151 CLR sing 320 n n C15 H152 CLR sing 321 n n C16 C17 CLR sing 322 n n C16 H161 CLR sing 323 n n C16 H162 CLR sing 324 n n C17 C20 CLR sing 325 n n C17 H17 CLR sing 326 n n C18 H181 CLR sing 327 n n C18 H182 CLR sing 328 n n C18 H183 CLR sing 329 n n C19 H191 CLR sing 330 n n C19 H192 CLR sing 331 n n C19 H193 CLR sing 332 n n C20 C21 CLR sing 333 n n C20 C22 CLR sing 334 n n C20 H20 CLR sing 335 n n C21 H211 CLR sing 336 n n C21 H212 CLR sing 337 n n C21 H213 CLR sing 338 n n C22 C23 CLR sing 339 n n C22 H221 CLR sing 340 n n C22 H222 CLR sing 341 n n C23 C24 CLR sing 342 n n C23 H231 CLR sing 343 n n C23 H232 CLR sing 344 n n C24 C25 CLR sing 345 n n C24 H241 CLR sing 346 n n C24 H242 CLR sing 347 n n C25 C26 CLR sing 348 n n C25 C27 CLR sing 349 n n C25 H25 CLR sing 350 n n C26 H261 CLR sing 351 n n C26 H262 CLR sing 352 n n C26 H263 CLR sing 353 n n C27 H271 CLR sing 354 n n C27 H272 CLR sing 355 n n C27 H273 CLR sing 356 n n O1 H1 CLR sing 357 n n # _atom_sites.entry_id 7LKP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 2301 5 NAG NAG . E 4 NAG A 1 2302 6 NAG NAG . F 4 NAG A 1 2303 7 NAG NAG . G 4 NAG A 1 2304 13 NAG NAG . H 4 NAG A 1 2305 14 NAG NAG . I 4 NAG A 1 2306 15 NAG NAG . J 5 CLR A 1 2307 1 CLR CLR . K 6 POV A 1 2308 2 POV POV . L 5 CLR A 1 2309 3 CLR CLR . M 7 AJP A 1 2310 4 AJP AJP . N 5 CLR A 1 2311 5 CLR CLR . O 5 CLR A 1 2312 6 CLR CLR . P 5 CLR A 1 2313 7 CLR CLR . Q 5 CLR A 1 2314 8 CLR CLR . R 5 CLR A 1 2315 9 CLR CLR . S 6 POV A 1 2316 10 POV POV . T 6 POV A 1 2317 11 POV POV . U 6 POV A 1 2318 12 POV POV . V 6 POV A 1 2319 13 POV POV . W 6 POV A 1 2320 14 POV POV . X 6 POV A 1 2321 15 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . J 5 187.543 180.086 161.141 1 112.95 ? C1 CLR 2307 A 1 HETATM 2 C C2 CLR . . . J 5 187.96 179.553 159.77 1 112.95 ? C2 CLR 2307 A 1 HETATM 3 C C3 CLR . . . J 5 189.452 179.636 159.588 1 112.95 ? C3 CLR 2307 A 1 HETATM 4 C C4 CLR . . . J 5 190.137 178.846 160.685 1 112.95 ? C4 CLR 2307 A 1 HETATM 5 C C5 CLR . . . J 5 189.734 179.322 162.064 1 112.95 ? C5 CLR 2307 A 1 HETATM 6 C C6 CLR . . . J 5 190.648 179.645 162.964 1 112.95 ? C6 CLR 2307 A 1 HETATM 7 C C7 CLR . . . J 5 190.357 180.087 164.362 1 112.95 ? C7 CLR 2307 A 1 HETATM 8 C C8 CLR . . . J 5 188.91 179.829 164.767 1 112.95 ? C8 CLR 2307 A 1 HETATM 9 C C9 CLR . . . J 5 187.969 180.228 163.619 1 112.95 ? C9 CLR 2307 A 1 HETATM 10 C C10 CLR . . . J 5 188.237 179.393 162.336 1 112.95 ? C10 CLR 2307 A 1 HETATM 11 C C11 CLR . . . J 5 186.493 180.178 164.048 1 112.95 ? C11 CLR 2307 A 1 HETATM 12 C C12 CLR . . . J 5 186.211 180.914 165.362 1 112.95 ? C12 CLR 2307 A 1 HETATM 13 C C13 CLR . . . J 5 187.097 180.38 166.487 1 112.95 ? C13 CLR 2307 A 1 HETATM 14 C C14 CLR . . . J 5 188.544 180.611 166.02 1 112.95 ? C14 CLR 2307 A 1 HETATM 15 C C15 CLR . . . J 5 189.375 180.403 167.281 1 112.95 ? C15 CLR 2307 A 1 HETATM 16 C C16 CLR . . . J 5 188.526 181.056 168.386 1 112.95 ? C16 CLR 2307 A 1 HETATM 17 C C17 CLR . . . J 5 187.082 181.164 167.832 1 112.95 ? C17 CLR 2307 A 1 HETATM 18 C C18 CLR . . . J 5 186.801 178.893 166.74 1 112.95 ? C18 CLR 2307 A 1 HETATM 19 C C19 CLR . . . J 5 187.727 177.949 162.474 1 112.95 ? C19 CLR 2307 A 1 HETATM 20 C C20 CLR . . . J 5 186.011 180.855 168.891 1 112.95 ? C20 CLR 2307 A 1 HETATM 21 C C21 CLR . . . J 5 184.634 181.364 168.478 1 112.95 ? C21 CLR 2307 A 1 HETATM 22 C C22 CLR . . . J 5 186.42 181.451 170.244 1 112.95 ? C22 CLR 2307 A 1 HETATM 23 C C23 CLR . . . J 5 186.78 180.447 171.303 1 112.95 ? C23 CLR 2307 A 1 HETATM 24 C C24 CLR . . . J 5 185.606 179.587 171.685 1 112.95 ? C24 CLR 2307 A 1 HETATM 25 C C25 CLR . . . J 5 185.663 178.942 173.066 1 112.95 ? C25 CLR 2307 A 1 HETATM 26 C C26 CLR . . . J 5 185.504 179.975 174.17 1 112.95 ? C26 CLR 2307 A 1 HETATM 27 C C27 CLR . . . J 5 184.614 177.851 173.203 1 112.95 ? C27 CLR 2307 A 1 HETATM 28 O O1 CLR . . . J 5 189.805 179.097 158.309 1 112.95 ? O1 CLR 2307 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #