data_7LKP # _model_server_result.job_id rl7yTkuRGhOe7A2cTdHQqw _model_server_result.datetime_utc '2024-11-08 18:42:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":2318}' # _entry.id 7LKP # _exptl.entry_id 7LKP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LKP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing 6 ? 3 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2 NAG 2 n B NAG 2 B 2 NAG B 3 NAG 2 n B BMA 3 B 3 BMA B 4 BMA 3 n C NAG 1 C 1 NAG B 8 NAG 3 n C NAG 2 C 2 NAG B 9 NAG 3 n C BMA 3 C 3 BMA B 10 BMA 3 n C BMA 4 C 4 BMA B 11 BMA 3 n C BMA 5 C 5 BMA B 12 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 324 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 370 A CYS 370 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 641 A CYS 641 1_555 A SG CYS 1490 A CYS 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 1444 A CYS 1444 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 1488 A CYS 1488 1_555 A SG CYS 1502 A CYS 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 98 A ASN 98 1_555 I C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 415 A ASN 415 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 444 A ASN 444 1_555 D C1 NAG . A NAG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 504 A ASN 504 1_555 E C1 NAG . A NAG 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A ND2 ASN 1469 A ASN 1469 1_555 F C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 A ND2 ASN 1529 A ASN 1529 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale7 A ND2 ASN 1588 A ASN 1588 1_555 G C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 A ND2 ASN 1662 A ASN 1662 1_555 H C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale10 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 576 n n N C13 POV sing 577 n n N C14 POV sing 578 n n N C15 POV sing 579 n n P O11 POV sing 580 n n P O12 POV sing 581 n n P O13 POV sing 582 n n P O14 POV doub 583 n n C1 C2 POV sing 584 n n C1 O11 POV sing 585 n n C1 H1 POV sing 586 n n C1 H1A POV sing 587 n n C2 C3 POV sing 588 n n C2 O21 POV sing 589 n n C2 H2 POV sing 590 n n C3 O31 POV sing 591 n n C3 H3 POV sing 592 n n C3 H3A POV sing 593 n n C210 C211 POV sing 594 n n C210 C29 POV doub 595 z n C210 H210 POV sing 596 n n C310 C311 POV sing 597 n n C310 C39 POV sing 598 n n C310 H310 POV sing 599 n n C310 H31A POV sing 600 n n C11 C12 POV sing 601 n n C11 O12 POV sing 602 n n C11 H11 POV sing 603 n n C11 H11A POV sing 604 n n C211 C212 POV sing 605 n n C211 H211 POV sing 606 n n C211 H21A POV sing 607 n n C311 C312 POV sing 608 n n C311 H311 POV sing 609 n n C311 H31B POV sing 610 n n C12 H12 POV sing 611 n n C12 H12A POV sing 612 n n C212 C213 POV sing 613 n n C212 H212 POV sing 614 n n C212 H21B POV sing 615 n n C312 C313 POV sing 616 n n C312 H312 POV sing 617 n n C312 H31C POV sing 618 n n C13 H13 POV sing 619 n n C13 H13A POV sing 620 n n C13 H13B POV sing 621 n n C213 C214 POV sing 622 n n C213 H213 POV sing 623 n n C213 H21C POV sing 624 n n C313 C314 POV sing 625 n n C313 H313 POV sing 626 n n C313 H31D POV sing 627 n n C14 H14 POV sing 628 n n C14 H14A POV sing 629 n n C14 H14B POV sing 630 n n C214 C215 POV sing 631 n n C214 H214 POV sing 632 n n C214 H21D POV sing 633 n n C314 C315 POV sing 634 n n C314 H314 POV sing 635 n n C314 H31E POV sing 636 n n C15 H15 POV sing 637 n n C15 H15A POV sing 638 n n C15 H15B POV sing 639 n n C215 C216 POV sing 640 n n C215 H215 POV sing 641 n n C215 H21E POV sing 642 n n C315 C316 POV sing 643 n n C315 H315 POV sing 644 n n C315 H31F POV sing 645 n n C216 C217 POV sing 646 n n C216 H216 POV sing 647 n n C216 H21F POV sing 648 n n C316 H316 POV sing 649 n n C316 H31G POV sing 650 n n C316 H31H POV sing 651 n n C217 C218 POV sing 652 n n C217 H217 POV sing 653 n n C217 H21G POV sing 654 n n C218 H218 POV sing 655 n n C218 H21H POV sing 656 n n C218 H21J POV sing 657 n n C21 O21 POV sing 658 n n C21 C22 POV sing 659 n n C21 O22 POV doub 660 n n C22 C23 POV sing 661 n n C22 H22 POV sing 662 n n C22 H22A POV sing 663 n n C23 C24 POV sing 664 n n C23 H23 POV sing 665 n n C23 H23A POV sing 666 n n C24 C25 POV sing 667 n n C24 H24 POV sing 668 n n C24 H24A POV sing 669 n n C25 C26 POV sing 670 n n C25 H25 POV sing 671 n n C25 H25A POV sing 672 n n C26 C27 POV sing 673 n n C26 H26 POV sing 674 n n C26 H26A POV sing 675 n n C27 C28 POV sing 676 n n C27 H27 POV sing 677 n n C27 H27A POV sing 678 n n C28 C29 POV sing 679 n n C28 H28 POV sing 680 n n C28 H28A POV sing 681 n n C29 H29 POV sing 682 n n C31 O31 POV sing 683 n n C31 C32 POV sing 684 n n C31 O32 POV doub 685 n n C32 C33 POV sing 686 n n C32 H32 POV sing 687 n n C32 H32A POV sing 688 n n C33 C34 POV sing 689 n n C33 H33 POV sing 690 n n C33 H33A POV sing 691 n n C34 C35 POV sing 692 n n C34 H34 POV sing 693 n n C34 H34A POV sing 694 n n C35 C36 POV sing 695 n n C35 H35 POV sing 696 n n C35 H35A POV sing 697 n n C36 C37 POV sing 698 n n C36 H36 POV sing 699 n n C36 H36A POV sing 700 n n C37 C38 POV sing 701 n n C37 H37 POV sing 702 n n C37 H37A POV sing 703 n n C38 C39 POV sing 704 n n C38 H38 POV sing 705 n n C38 H38A POV sing 706 n n C39 H39 POV sing 707 n n C39 H39A POV sing 708 n n # _atom_sites.entry_id 7LKP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 2301 5 NAG NAG . E 4 NAG A 1 2302 6 NAG NAG . F 4 NAG A 1 2303 7 NAG NAG . G 4 NAG A 1 2304 13 NAG NAG . H 4 NAG A 1 2305 14 NAG NAG . I 4 NAG A 1 2306 15 NAG NAG . J 5 CLR A 1 2307 1 CLR CLR . K 6 POV A 1 2308 2 POV POV . L 5 CLR A 1 2309 3 CLR CLR . M 7 AJP A 1 2310 4 AJP AJP . N 5 CLR A 1 2311 5 CLR CLR . O 5 CLR A 1 2312 6 CLR CLR . P 5 CLR A 1 2313 7 CLR CLR . Q 5 CLR A 1 2314 8 CLR CLR . R 5 CLR A 1 2315 9 CLR CLR . S 6 POV A 1 2316 10 POV POV . T 6 POV A 1 2317 11 POV POV . U 6 POV A 1 2318 12 POV POV . V 6 POV A 1 2319 13 POV POV . W 6 POV A 1 2320 14 POV POV . X 6 POV A 1 2321 15 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C210 POV . . . U 6 176.773 176.107 233.05 1 89.73 ? C210 POV 2318 A 1 HETATM 2 C C211 POV . . . U 6 175.736 175.531 232.09 1 89.73 ? C211 POV 2318 A 1 HETATM 3 C C212 POV . . . U 6 174.581 176.517 231.939 1 89.73 ? C212 POV 2318 A 1 HETATM 4 C C213 POV . . . U 6 173.61 176.008 230.878 1 89.73 ? C213 POV 2318 A 1 HETATM 5 C C214 POV . . . U 6 173.487 177.039 229.76 1 89.73 ? C214 POV 2318 A 1 HETATM 6 C C215 POV . . . U 6 172.874 176.379 228.526 1 89.73 ? C215 POV 2318 A 1 HETATM 7 C C216 POV . . . U 6 172.429 177.457 227.54 1 89.73 ? C216 POV 2318 A 1 HETATM 8 C C217 POV . . . U 6 171.034 177.949 227.917 1 89.73 ? C217 POV 2318 A 1 HETATM 9 C C218 POV . . . U 6 170.971 179.468 227.777 1 89.73 ? C218 POV 2318 A 1 HETATM 10 C C21 POV . . . U 6 177.736 180.157 242.212 1 89.73 ? C21 POV 2318 A 1 HETATM 11 C C22 POV . . . U 6 178.042 179.528 240.854 1 89.73 ? C22 POV 2318 A 1 HETATM 12 C C23 POV . . . U 6 176.954 178.516 240.5 1 89.73 ? C23 POV 2318 A 1 HETATM 13 C C24 POV . . . U 6 176.71 178.549 238.993 1 89.73 ? C24 POV 2318 A 1 HETATM 14 C C25 POV . . . U 6 176.778 177.134 238.423 1 89.73 ? C25 POV 2318 A 1 HETATM 15 C C26 POV . . . U 6 177.821 177.093 237.306 1 89.73 ? C26 POV 2318 A 1 HETATM 16 C C27 POV . . . U 6 177.694 175.789 236.52 1 89.73 ? C27 POV 2318 A 1 HETATM 17 C C28 POV . . . U 6 178.163 176.01 235.085 1 89.73 ? C28 POV 2318 A 1 HETATM 18 C C29 POV . . . U 6 177.127 175.432 234.124 1 89.73 ? C29 POV 2318 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #