data_7LKP
#
_model_server_result.job_id            Pc5yd9RCpfpXQis9YmivrQ 
_model_server_result.datetime_utc      '2024-11-08 18:44:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lkp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":2320}' 
#
_entry.id    7LKP 
#
_exptl.entry_id    7LKP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LKP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LKP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 S N N 
? 6 T N N 
? 6 U N N 
? 6 V N N 
? 6 W N N 
? 6 X N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
5 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing 
6 ? 3 5 3 BMA BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG B 2 NAG 
2 n B NAG 2 B 2 NAG B 3 NAG 
2 n B BMA 3 B 3 BMA B 4 BMA 
3 n C NAG 1 C 1 NAG B 8 NAG 
3 n C NAG 2 C 2 NAG B 9 NAG 
3 n C BMA 3 C 3 BMA B 10 BMA 
3 n C BMA 4 C 4 BMA B 11 BMA 
3 n C BMA 5 C 5 BMA B 12 BMA 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 324 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 370 A CYS 370 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 A SG CYS 641 A CYS 641 1_555 A SG CYS 1490 A CYS 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 A SG CYS 1444 A CYS 1444 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 A SG CYS 1488 A CYS 1488 1_555 A SG CYS 1502 A CYS 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 A ND2 ASN 98 A ASN 98 1_555 I C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale2 A ND2 ASN 415 A ASN 415 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 444 A ASN 444 1_555 D C1 NAG . A NAG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale4 A ND2 ASN 504 A ASN 504 1_555 E C1 NAG . A NAG 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 A ND2 ASN 1469 A ASN 1469 1_555 F C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale6 A ND2 ASN 1529 A ASN 1529 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? 
covale ? covale7 A ND2 ASN 1588 A ASN 1588 1_555 G C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale8 A ND2 ASN 1662 A ASN 1662 1_555 H C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale9 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale10 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale12 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale13 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale14 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 576 n n 
N C13 POV sing 577 n n 
N C14 POV sing 578 n n 
N C15 POV sing 579 n n 
P O11 POV sing 580 n n 
P O12 POV sing 581 n n 
P O13 POV sing 582 n n 
P O14 POV doub 583 n n 
C1 C2 POV sing 584 n n 
C1 O11 POV sing 585 n n 
C1 H1 POV sing 586 n n 
C1 H1A POV sing 587 n n 
C2 C3 POV sing 588 n n 
C2 O21 POV sing 589 n n 
C2 H2 POV sing 590 n n 
C3 O31 POV sing 591 n n 
C3 H3 POV sing 592 n n 
C3 H3A POV sing 593 n n 
C210 C211 POV sing 594 n n 
C210 C29 POV doub 595 z n 
C210 H210 POV sing 596 n n 
C310 C311 POV sing 597 n n 
C310 C39 POV sing 598 n n 
C310 H310 POV sing 599 n n 
C310 H31A POV sing 600 n n 
C11 C12 POV sing 601 n n 
C11 O12 POV sing 602 n n 
C11 H11 POV sing 603 n n 
C11 H11A POV sing 604 n n 
C211 C212 POV sing 605 n n 
C211 H211 POV sing 606 n n 
C211 H21A POV sing 607 n n 
C311 C312 POV sing 608 n n 
C311 H311 POV sing 609 n n 
C311 H31B POV sing 610 n n 
C12 H12 POV sing 611 n n 
C12 H12A POV sing 612 n n 
C212 C213 POV sing 613 n n 
C212 H212 POV sing 614 n n 
C212 H21B POV sing 615 n n 
C312 C313 POV sing 616 n n 
C312 H312 POV sing 617 n n 
C312 H31C POV sing 618 n n 
C13 H13 POV sing 619 n n 
C13 H13A POV sing 620 n n 
C13 H13B POV sing 621 n n 
C213 C214 POV sing 622 n n 
C213 H213 POV sing 623 n n 
C213 H21C POV sing 624 n n 
C313 C314 POV sing 625 n n 
C313 H313 POV sing 626 n n 
C313 H31D POV sing 627 n n 
C14 H14 POV sing 628 n n 
C14 H14A POV sing 629 n n 
C14 H14B POV sing 630 n n 
C214 C215 POV sing 631 n n 
C214 H214 POV sing 632 n n 
C214 H21D POV sing 633 n n 
C314 C315 POV sing 634 n n 
C314 H314 POV sing 635 n n 
C314 H31E POV sing 636 n n 
C15 H15 POV sing 637 n n 
C15 H15A POV sing 638 n n 
C15 H15B POV sing 639 n n 
C215 C216 POV sing 640 n n 
C215 H215 POV sing 641 n n 
C215 H21E POV sing 642 n n 
C315 C316 POV sing 643 n n 
C315 H315 POV sing 644 n n 
C315 H31F POV sing 645 n n 
C216 C217 POV sing 646 n n 
C216 H216 POV sing 647 n n 
C216 H21F POV sing 648 n n 
C316 H316 POV sing 649 n n 
C316 H31G POV sing 650 n n 
C316 H31H POV sing 651 n n 
C217 C218 POV sing 652 n n 
C217 H217 POV sing 653 n n 
C217 H21G POV sing 654 n n 
C218 H218 POV sing 655 n n 
C218 H21H POV sing 656 n n 
C218 H21J POV sing 657 n n 
C21 O21 POV sing 658 n n 
C21 C22 POV sing 659 n n 
C21 O22 POV doub 660 n n 
C22 C23 POV sing 661 n n 
C22 H22 POV sing 662 n n 
C22 H22A POV sing 663 n n 
C23 C24 POV sing 664 n n 
C23 H23 POV sing 665 n n 
C23 H23A POV sing 666 n n 
C24 C25 POV sing 667 n n 
C24 H24 POV sing 668 n n 
C24 H24A POV sing 669 n n 
C25 C26 POV sing 670 n n 
C25 H25 POV sing 671 n n 
C25 H25A POV sing 672 n n 
C26 C27 POV sing 673 n n 
C26 H26 POV sing 674 n n 
C26 H26A POV sing 675 n n 
C27 C28 POV sing 676 n n 
C27 H27 POV sing 677 n n 
C27 H27A POV sing 678 n n 
C28 C29 POV sing 679 n n 
C28 H28 POV sing 680 n n 
C28 H28A POV sing 681 n n 
C29 H29 POV sing 682 n n 
C31 O31 POV sing 683 n n 
C31 C32 POV sing 684 n n 
C31 O32 POV doub 685 n n 
C32 C33 POV sing 686 n n 
C32 H32 POV sing 687 n n 
C32 H32A POV sing 688 n n 
C33 C34 POV sing 689 n n 
C33 H33 POV sing 690 n n 
C33 H33A POV sing 691 n n 
C34 C35 POV sing 692 n n 
C34 H34 POV sing 693 n n 
C34 H34A POV sing 694 n n 
C35 C36 POV sing 695 n n 
C35 H35 POV sing 696 n n 
C35 H35A POV sing 697 n n 
C36 C37 POV sing 698 n n 
C36 H36 POV sing 699 n n 
C36 H36A POV sing 700 n n 
C37 C38 POV sing 701 n n 
C37 H37 POV sing 702 n n 
C37 H37A POV sing 703 n n 
C38 C39 POV sing 704 n n 
C38 H38 POV sing 705 n n 
C38 H38A POV sing 706 n n 
C39 H39 POV sing 707 n n 
C39 H39A POV sing 708 n n 
#
_atom_sites.entry_id                     7LKP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 2301 5 NAG NAG . 
E 4 NAG A 1 2302 6 NAG NAG . 
F 4 NAG A 1 2303 7 NAG NAG . 
G 4 NAG A 1 2304 13 NAG NAG . 
H 4 NAG A 1 2305 14 NAG NAG . 
I 4 NAG A 1 2306 15 NAG NAG . 
J 5 CLR A 1 2307 1 CLR CLR . 
K 6 POV A 1 2308 2 POV POV . 
L 5 CLR A 1 2309 3 CLR CLR . 
M 7 AJP A 1 2310 4 AJP AJP . 
N 5 CLR A 1 2311 5 CLR CLR . 
O 5 CLR A 1 2312 6 CLR CLR . 
P 5 CLR A 1 2313 7 CLR CLR . 
Q 5 CLR A 1 2314 8 CLR CLR . 
R 5 CLR A 1 2315 9 CLR CLR . 
S 6 POV A 1 2316 10 POV POV . 
T 6 POV A 1 2317 11 POV POV . 
U 6 POV A 1 2318 12 POV POV . 
V 6 POV A 1 2319 13 POV POV . 
W 6 POV A 1 2320 14 POV POV . 
X 6 POV A 1 2321 15 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C310 POV . . . W 6 175.149 171.174 240.11 1 109.83 ? C310 POV 2320 A 1 
HETATM 2 C C311 POV . . . W 6 174.075 170.107 239.923 1 109.83 ? C311 POV 2320 A 1 
HETATM 3 C C312 POV . . . W 6 172.779 170.786 239.49 1 109.83 ? C312 POV 2320 A 1 
HETATM 4 C C313 POV . . . W 6 171.614 169.809 239.617 1 109.83 ? C313 POV 2320 A 1 
HETATM 5 C C314 POV . . . W 6 170.531 170.432 240.494 1 109.83 ? C314 POV 2320 A 1 
HETATM 6 C C34 POV . . . W 6 179.851 173.026 239.982 1 109.83 ? C34 POV 2320 A 1 
HETATM 7 C C35 POV . . . W 6 179.907 172.706 238.49 1 109.83 ? C35 POV 2320 A 1 
HETATM 8 C C36 POV . . . W 6 178.486 172.552 237.956 1 109.83 ? C36 POV 2320 A 1 
HETATM 9 C C37 POV . . . W 6 178.138 171.071 237.818 1 109.83 ? C37 POV 2320 A 1 
HETATM 10 C C38 POV . . . W 6 176.659 170.869 238.14 1 109.83 ? C38 POV 2320 A 1 
HETATM 11 C C39 POV . . . W 6 176.502 170.644 239.642 1 109.83 ? C39 POV 2320 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#