data_7LKZ # _model_server_result.job_id PV8KRdFKNaGc5SIQTbwu-Q _model_server_result.datetime_utc '2024-11-29 19:50:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2505}' # _entry.id 7LKZ # _exptl.entry_id 7LKZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LKZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing 6 ? 3 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2 NAG 2 n B NAG 2 B 2 NAG B 3 NAG 2 n B BMA 3 B 3 BMA B 4 BMA 3 n C NAG 1 C 1 NAG B 8 NAG 3 n C NAG 2 C 2 NAG B 9 NAG 3 n C BMA 3 C 3 BMA B 10 BMA 3 n C BMA 4 C 4 BMA B 11 BMA 3 n C BMA 5 C 5 BMA B 12 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 324 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 370 A CYS 370 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 641 A CYS 641 1_555 A SG CYS 1490 A CYS 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 1444 A CYS 1444 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 1488 A CYS 1488 1_555 A SG CYS 1502 A CYS 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 98 A ASN 98 1_555 Q C1 NAG . A NAG 2514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 415 A ASN 415 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 444 A ASN 444 1_555 L C1 NAG . A NAG 2509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 1469 A ASN 1469 1_555 N C1 NAG . A NAG 2511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 A ND2 ASN 1529 A ASN 1529 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 A ND2 ASN 1588 A ASN 1588 1_555 O C1 NAG . A NAG 2512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 A ND2 ASN 1662 A ASN 1662 1_555 P C1 NAG . A NAG 2513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale11 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A OG1 THR 970 A THR 970 1_555 S MG MG . A MG 2516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 A OE1 GLN 2019 A GLN 2019 1_555 R MG MG . A MG 2515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc3 R MG MG . A MG 2515 1_555 U O1G ATP . A ATP 2518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc4 R MG MG . A MG 2515 1_555 U O2G ATP . A ATP 2518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 R MG MG . A MG 2515 1_555 U O1B ATP . A ATP 2518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc6 R MG MG . A MG 2515 1_555 U O3B ATP . A ATP 2518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc7 S MG MG . A MG 2516 1_555 T O1B ATP . A ATP 2517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc8 S MG MG . A MG 2516 1_555 T O1G ATP . A ATP 2517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 485 n n N C13 POV sing 486 n n N C14 POV sing 487 n n N C15 POV sing 488 n n P O11 POV sing 489 n n P O12 POV sing 490 n n P O13 POV sing 491 n n P O14 POV doub 492 n n C1 C2 POV sing 493 n n C1 O11 POV sing 494 n n C1 H1 POV sing 495 n n C1 H1A POV sing 496 n n C2 C3 POV sing 497 n n C2 O21 POV sing 498 n n C2 H2 POV sing 499 n n C3 O31 POV sing 500 n n C3 H3 POV sing 501 n n C3 H3A POV sing 502 n n C210 C211 POV sing 503 n n C210 C29 POV doub 504 z n C210 H210 POV sing 505 n n C310 C311 POV sing 506 n n C310 C39 POV sing 507 n n C310 H310 POV sing 508 n n C310 H31A POV sing 509 n n C11 C12 POV sing 510 n n C11 O12 POV sing 511 n n C11 H11 POV sing 512 n n C11 H11A POV sing 513 n n C211 C212 POV sing 514 n n C211 H211 POV sing 515 n n C211 H21A POV sing 516 n n C311 C312 POV sing 517 n n C311 H311 POV sing 518 n n C311 H31B POV sing 519 n n C12 H12 POV sing 520 n n C12 H12A POV sing 521 n n C212 C213 POV sing 522 n n C212 H212 POV sing 523 n n C212 H21B POV sing 524 n n C312 C313 POV sing 525 n n C312 H312 POV sing 526 n n C312 H31C POV sing 527 n n C13 H13 POV sing 528 n n C13 H13A POV sing 529 n n C13 H13B POV sing 530 n n C213 C214 POV sing 531 n n C213 H213 POV sing 532 n n C213 H21C POV sing 533 n n C313 C314 POV sing 534 n n C313 H313 POV sing 535 n n C313 H31D POV sing 536 n n C14 H14 POV sing 537 n n C14 H14A POV sing 538 n n C14 H14B POV sing 539 n n C214 C215 POV sing 540 n n C214 H214 POV sing 541 n n C214 H21D POV sing 542 n n C314 C315 POV sing 543 n n C314 H314 POV sing 544 n n C314 H31E POV sing 545 n n C15 H15 POV sing 546 n n C15 H15A POV sing 547 n n C15 H15B POV sing 548 n n C215 C216 POV sing 549 n n C215 H215 POV sing 550 n n C215 H21E POV sing 551 n n C315 C316 POV sing 552 n n C315 H315 POV sing 553 n n C315 H31F POV sing 554 n n C216 C217 POV sing 555 n n C216 H216 POV sing 556 n n C216 H21F POV sing 557 n n C316 H316 POV sing 558 n n C316 H31G POV sing 559 n n C316 H31H POV sing 560 n n C217 C218 POV sing 561 n n C217 H217 POV sing 562 n n C217 H21G POV sing 563 n n C218 H218 POV sing 564 n n C218 H21H POV sing 565 n n C218 H21J POV sing 566 n n C21 O21 POV sing 567 n n C21 C22 POV sing 568 n n C21 O22 POV doub 569 n n C22 C23 POV sing 570 n n C22 H22 POV sing 571 n n C22 H22A POV sing 572 n n C23 C24 POV sing 573 n n C23 H23 POV sing 574 n n C23 H23A POV sing 575 n n C24 C25 POV sing 576 n n C24 H24 POV sing 577 n n C24 H24A POV sing 578 n n C25 C26 POV sing 579 n n C25 H25 POV sing 580 n n C25 H25A POV sing 581 n n C26 C27 POV sing 582 n n C26 H26 POV sing 583 n n C26 H26A POV sing 584 n n C27 C28 POV sing 585 n n C27 H27 POV sing 586 n n C27 H27A POV sing 587 n n C28 C29 POV sing 588 n n C28 H28 POV sing 589 n n C28 H28A POV sing 590 n n C29 H29 POV sing 591 n n C31 O31 POV sing 592 n n C31 C32 POV sing 593 n n C31 O32 POV doub 594 n n C32 C33 POV sing 595 n n C32 H32 POV sing 596 n n C32 H32A POV sing 597 n n C33 C34 POV sing 598 n n C33 H33 POV sing 599 n n C33 H33A POV sing 600 n n C34 C35 POV sing 601 n n C34 H34 POV sing 602 n n C34 H34A POV sing 603 n n C35 C36 POV sing 604 n n C35 H35 POV sing 605 n n C35 H35A POV sing 606 n n C36 C37 POV sing 607 n n C36 H36 POV sing 608 n n C36 H36A POV sing 609 n n C37 C38 POV sing 610 n n C37 H37 POV sing 611 n n C37 H37A POV sing 612 n n C38 C39 POV sing 613 n n C38 H38 POV sing 614 n n C38 H38A POV sing 615 n n C39 H39 POV sing 616 n n C39 H39A POV sing 617 n n # _atom_sites.entry_id 7LKZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 6OU A 1 2501 2501 6OU 6OU . E 4 6OU A 1 2502 2601 6OU 6OU . F 4 6OU A 1 2503 2701 6OU 6OU . G 5 POV A 1 2504 2901 POV POV . H 5 POV A 1 2505 3001 POV POV . I 5 POV A 1 2506 3101 POV POV . J 5 POV A 1 2507 3201 POV POV . K 5 POV A 1 2508 3301 POV POV . L 6 NAG A 1 2509 5 NAG NAG . M 6 NAG A 1 2510 6 NAG NAG . N 6 NAG A 1 2511 7 NAG NAG . O 6 NAG A 1 2512 13 NAG NAG . P 6 NAG A 1 2513 14 NAG NAG . Q 6 NAG A 1 2514 15 NAG NAG . R 7 MG A 1 2515 1 MG MG . S 7 MG A 1 2516 2 MG MG . T 8 ATP A 1 2517 2301 ATP ATP . U 8 ATP A 1 2518 3001 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C310 POV . . . H 5 183.115 190.822 136.865 1 66.25 ? C310 POV 2505 A 1 HETATM 2 C C311 POV . . . H 5 183.286 192.236 137.413 1 66.25 ? C311 POV 2505 A 1 HETATM 3 C C312 POV . . . H 5 182.812 192.278 138.864 1 66.25 ? C312 POV 2505 A 1 HETATM 4 C C313 POV . . . H 5 181.375 191.768 138.95 1 66.25 ? C313 POV 2505 A 1 HETATM 5 C C35 POV . . . H 5 187.34 189.529 133.133 1 66.25 ? C35 POV 2505 A 1 HETATM 6 C C36 POV . . . H 5 186.392 190.334 134.015 1 66.25 ? C36 POV 2505 A 1 HETATM 7 C C37 POV . . . H 5 186.496 189.836 135.453 1 66.25 ? C37 POV 2505 A 1 HETATM 8 C C38 POV . . . H 5 185.542 190.627 136.345 1 66.25 ? C38 POV 2505 A 1 HETATM 9 C C39 POV . . . H 5 184.135 190.576 135.758 1 66.25 ? C39 POV 2505 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 9 #