data_7LKZ # _model_server_result.job_id 1wcBPA_V-PdyVMK_nJCQzA _model_server_result.datetime_utc '2024-12-01 23:18:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":2518}' # _entry.id 7LKZ # _exptl.entry_id 7LKZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LKZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 T N N ? 8 U N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing 6 ? 3 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2 NAG 2 n B NAG 2 B 2 NAG B 3 NAG 2 n B BMA 3 B 3 BMA B 4 BMA 3 n C NAG 1 C 1 NAG B 8 NAG 3 n C NAG 2 C 2 NAG B 9 NAG 3 n C BMA 3 C 3 BMA B 10 BMA 3 n C BMA 4 C 4 BMA B 11 BMA 3 n C BMA 5 C 5 BMA B 12 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 324 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 370 A CYS 370 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 641 A CYS 641 1_555 A SG CYS 1490 A CYS 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 1444 A CYS 1444 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 1488 A CYS 1488 1_555 A SG CYS 1502 A CYS 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 98 A ASN 98 1_555 Q C1 NAG . A NAG 2514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 415 A ASN 415 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 444 A ASN 444 1_555 L C1 NAG . A NAG 2509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 1469 A ASN 1469 1_555 N C1 NAG . A NAG 2511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 A ND2 ASN 1529 A ASN 1529 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 A ND2 ASN 1588 A ASN 1588 1_555 O C1 NAG . A NAG 2512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 A ND2 ASN 1662 A ASN 1662 1_555 P C1 NAG . A NAG 2513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale11 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A OG1 THR 970 A THR 970 1_555 S MG MG . A MG 2516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 A OE1 GLN 2019 A GLN 2019 1_555 R MG MG . A MG 2515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc3 R MG MG . A MG 2515 1_555 U O1G ATP . A ATP 2518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc4 R MG MG . A MG 2515 1_555 U O2G ATP . A ATP 2518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 R MG MG . A MG 2515 1_555 U O1B ATP . A ATP 2518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc6 R MG MG . A MG 2515 1_555 U O3B ATP . A ATP 2518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc7 S MG MG . A MG 2516 1_555 T O1B ATP . A ATP 2517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc8 S MG MG . A MG 2516 1_555 T O1G ATP . A ATP 2517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 194 n n PG O2G ATP sing 195 n n PG O3G ATP sing 196 n n PG O3B ATP sing 197 n n O2G HOG2 ATP sing 198 n n O3G HOG3 ATP sing 199 n n PB O1B ATP doub 200 n n PB O2B ATP sing 201 n n PB O3B ATP sing 202 n n PB O3A ATP sing 203 n n O2B HOB2 ATP sing 204 n n PA O1A ATP doub 205 n n PA O2A ATP sing 206 n n PA O3A ATP sing 207 n n PA O5' ATP sing 208 n n O2A HOA2 ATP sing 209 n n O5' C5' ATP sing 210 n n C5' C4' ATP sing 211 n n C5' "H5'1" ATP sing 212 n n C5' "H5'2" ATP sing 213 n n C4' O4' ATP sing 214 n n C4' C3' ATP sing 215 n n C4' H4' ATP sing 216 n n O4' C1' ATP sing 217 n n C3' O3' ATP sing 218 n n C3' C2' ATP sing 219 n n C3' H3' ATP sing 220 n n O3' HO3' ATP sing 221 n n C2' O2' ATP sing 222 n n C2' C1' ATP sing 223 n n C2' H2' ATP sing 224 n n O2' HO2' ATP sing 225 n n C1' N9 ATP sing 226 n n C1' H1' ATP sing 227 n n N9 C8 ATP sing 228 n y N9 C4 ATP sing 229 n y C8 N7 ATP doub 230 n y C8 H8 ATP sing 231 n n N7 C5 ATP sing 232 n y C5 C6 ATP sing 233 n y C5 C4 ATP doub 234 n y C6 N6 ATP sing 235 n n C6 N1 ATP doub 236 n y N6 HN61 ATP sing 237 n n N6 HN62 ATP sing 238 n n N1 C2 ATP sing 239 n y C2 N3 ATP doub 240 n y C2 H2 ATP sing 241 n n N3 C4 ATP sing 242 n y # _atom_sites.entry_id 7LKZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 6OU A 1 2501 2501 6OU 6OU . E 4 6OU A 1 2502 2601 6OU 6OU . F 4 6OU A 1 2503 2701 6OU 6OU . G 5 POV A 1 2504 2901 POV POV . H 5 POV A 1 2505 3001 POV POV . I 5 POV A 1 2506 3101 POV POV . J 5 POV A 1 2507 3201 POV POV . K 5 POV A 1 2508 3301 POV POV . L 6 NAG A 1 2509 5 NAG NAG . M 6 NAG A 1 2510 6 NAG NAG . N 6 NAG A 1 2511 7 NAG NAG . O 6 NAG A 1 2512 13 NAG NAG . P 6 NAG A 1 2513 14 NAG NAG . Q 6 NAG A 1 2514 15 NAG NAG . R 7 MG A 1 2515 1 MG MG . S 7 MG A 1 2516 2 MG MG . T 8 ATP A 1 2517 2301 ATP ATP . U 8 ATP A 1 2518 3001 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . U 8 171.339 183.776 227.67 1 35.03 ? PG ATP 2518 A 1 HETATM 2 O O1G ATP . . . U 8 171.983 185.018 228.218 1 35.03 ? O1G ATP 2518 A 1 HETATM 3 O O2G ATP . . . U 8 172.036 183.197 226.471 1 35.03 ? O2G ATP 2518 A 1 HETATM 4 O O3G ATP . . . U 8 170.941 182.767 228.708 1 35.03 ? O3G ATP 2518 A 1 HETATM 5 P PB ATP . . . U 8 170.017 185.755 226.359 1 35.03 ? PB ATP 2518 A 1 HETATM 6 O O1B ATP . . . U 8 171.195 185.736 225.426 1 35.03 ? O1B ATP 2518 A 1 HETATM 7 O O2B ATP . . . U 8 169.938 186.799 227.437 1 35.03 ? O2B ATP 2518 A 1 HETATM 8 O O3B ATP . . . U 8 169.956 184.333 227.088 1 35.03 ? O3B ATP 2518 A 1 HETATM 9 P PA ATP . . . U 8 168.657 186.667 224.129 1 35.03 ? PA ATP 2518 A 1 HETATM 10 O O1A ATP . . . U 8 168.771 188.118 224.495 1 35.03 ? O1A ATP 2518 A 1 HETATM 11 O O2A ATP . . . U 8 169.657 186.04 223.197 1 35.03 ? O2A ATP 2518 A 1 HETATM 12 O O3A ATP . . . U 8 168.668 185.83 225.495 1 35.03 ? O3A ATP 2518 A 1 HETATM 13 O O5' ATP . . . U 8 167.183 186.432 223.554 1 35.03 ? O5' ATP 2518 A 1 HETATM 14 C C5' ATP . . . U 8 166.193 185.83 224.375 1 35.03 ? C5' ATP 2518 A 1 HETATM 15 C C4' ATP . . . U 8 165.036 185.397 223.498 1 35.03 ? C4' ATP 2518 A 1 HETATM 16 O O4' ATP . . . U 8 165.194 185.967 222.204 1 35.03 ? O4' ATP 2518 A 1 HETATM 17 C C3' ATP . . . U 8 165.041 183.894 223.315 1 35.03 ? C3' ATP 2518 A 1 HETATM 18 O O3' ATP . . . U 8 163.86 183.348 223.897 1 35.03 ? O3' ATP 2518 A 1 HETATM 19 C C2' ATP . . . U 8 165.023 183.655 221.826 1 35.03 ? C2' ATP 2518 A 1 HETATM 20 O O2' ATP . . . U 8 163.916 182.829 221.483 1 35.03 ? O2' ATP 2518 A 1 HETATM 21 C C1' ATP . . . U 8 164.822 185.018 221.21 1 35.03 ? C1' ATP 2518 A 1 HETATM 22 N N9 ATP . . . U 8 165.66 185.15 219.998 1 35.03 ? N9 ATP 2518 A 1 HETATM 23 C C8 ATP . . . U 8 166.992 185.312 219.962 1 35.03 ? C8 ATP 2518 A 1 HETATM 24 N N7 ATP . . . U 8 167.438 185.398 218.685 1 35.03 ? N7 ATP 2518 A 1 HETATM 25 C C5 ATP . . . U 8 166.369 185.289 217.88 1 35.03 ? C5 ATP 2518 A 1 HETATM 26 C C6 ATP . . . U 8 166.125 185.296 216.422 1 35.03 ? C6 ATP 2518 A 1 HETATM 27 N N6 ATP . . . U 8 167.147 185.44 215.547 1 35.03 ? N6 ATP 2518 A 1 HETATM 28 N N1 ATP . . . U 8 164.853 185.152 215.995 1 35.03 ? N1 ATP 2518 A 1 HETATM 29 C C2 ATP . . . U 8 163.831 185.006 216.854 1 35.03 ? C2 ATP 2518 A 1 HETATM 30 N N3 ATP . . . U 8 163.98 184.99 218.187 1 35.03 ? N3 ATP 2518 A 1 HETATM 31 C C4 ATP . . . U 8 165.201 185.123 218.75 1 35.03 ? C4 ATP 2518 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 617 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #