data_7LL3
#
_model_server_result.job_id            ZQtVTVVEsZkJ4VP6ssR8nQ 
_model_server_result.datetime_utc      '2024-11-22 19:12:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ll3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    7LL3 
#
_exptl.entry_id    7LL3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7LL3 
_cell.length_a            123.655 
_cell.length_b            123.655 
_cell.length_c            289.409 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LL3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -61.8275 107.088371 48.234833 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G O1B PPK . A PPK 705 1_555 H MG MG . A MG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc2 G O3G PPK . A PPK 705 1_555 I MG MG . A MG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
metalc ? metalc3 H MG MG . A MG 706 1_555 B OE2 GLU 43 B GLU 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? 
metalc ? metalc4 H MG MG . A MG 706 1_555 N O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc5 I MG MG . A MG 707 1_555 M O HOH . A HOH 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7LL3 
_atom_sites.fract_transf_matrix[1][1]    0.008087 
_atom_sites.fract_transf_matrix[1][2]    0.004669 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009338 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 701 701 EDO EDO . 
D 2 EDO A 1 702 1201 EDO EDO . 
E 2 EDO A 1 703 1301 EDO EDO . 
F 3 UNP A 1 704 1401 UNP UNP . 
G 4 PPK A 1 705 1501 PPK PPK . 
H 5 MG A 1 706 1 MG MG . 
I 5 MG A 1 707 2 MG MG . 
J 2 EDO B 1 701 701 EDO EDO . 
K 2 EDO B 1 702 801 EDO EDO . 
L 4 PPK B 1 703 1001 PPK PPK . 
M 6 HOH A 1 801 129 HOH HOH . 
M 6 HOH A 2 802 145 HOH HOH . 
M 6 HOH A 3 803 71 HOH HOH . 
M 6 HOH A 4 804 138 HOH HOH . 
M 6 HOH A 5 805 62 HOH HOH . 
M 6 HOH A 6 806 67 HOH HOH . 
M 6 HOH A 7 807 37 HOH HOH . 
M 6 HOH A 8 808 23 HOH HOH . 
M 6 HOH A 9 809 4 HOH HOH . 
M 6 HOH A 10 810 45 HOH HOH . 
M 6 HOH A 11 811 72 HOH HOH . 
M 6 HOH A 12 812 50 HOH HOH . 
M 6 HOH A 13 813 81 HOH HOH . 
M 6 HOH A 14 814 36 HOH HOH . 
M 6 HOH A 15 815 6 HOH HOH . 
M 6 HOH A 16 816 87 HOH HOH . 
M 6 HOH A 17 817 17 HOH HOH . 
M 6 HOH A 18 818 92 HOH HOH . 
M 6 HOH A 19 819 58 HOH HOH . 
M 6 HOH A 20 820 30 HOH HOH . 
M 6 HOH A 21 821 24 HOH HOH . 
M 6 HOH A 22 822 131 HOH HOH . 
M 6 HOH A 23 823 13 HOH HOH . 
M 6 HOH A 24 824 20 HOH HOH . 
M 6 HOH A 25 825 9 HOH HOH . 
M 6 HOH A 26 826 80 HOH HOH . 
M 6 HOH A 27 827 33 HOH HOH . 
M 6 HOH A 28 828 76 HOH HOH . 
M 6 HOH A 29 829 147 HOH HOH . 
M 6 HOH A 30 830 68 HOH HOH . 
M 6 HOH A 31 831 5 HOH HOH . 
M 6 HOH A 32 832 39 HOH HOH . 
M 6 HOH A 33 833 1 HOH HOH . 
M 6 HOH A 34 834 40 HOH HOH . 
M 6 HOH A 35 835 123 HOH HOH . 
M 6 HOH A 36 836 66 HOH HOH . 
M 6 HOH A 37 837 35 HOH HOH . 
M 6 HOH A 38 838 82 HOH HOH . 
M 6 HOH A 39 839 47 HOH HOH . 
M 6 HOH A 40 840 38 HOH HOH . 
M 6 HOH A 41 841 85 HOH HOH . 
M 6 HOH A 42 842 7 HOH HOH . 
M 6 HOH A 43 843 79 HOH HOH . 
M 6 HOH A 44 844 48 HOH HOH . 
M 6 HOH A 45 845 83 HOH HOH . 
M 6 HOH A 46 846 16 HOH HOH . 
M 6 HOH A 47 847 55 HOH HOH . 
M 6 HOH A 48 848 84 HOH HOH . 
M 6 HOH A 49 849 114 HOH HOH . 
M 6 HOH A 50 850 27 HOH HOH . 
M 6 HOH A 51 851 125 HOH HOH . 
M 6 HOH A 52 852 57 HOH HOH . 
M 6 HOH A 53 853 56 HOH HOH . 
M 6 HOH A 54 854 133 HOH HOH . 
M 6 HOH A 55 855 12 HOH HOH . 
M 6 HOH A 56 856 73 HOH HOH . 
M 6 HOH A 57 857 19 HOH HOH . 
M 6 HOH A 58 858 144 HOH HOH . 
M 6 HOH A 59 859 139 HOH HOH . 
M 6 HOH A 60 860 103 HOH HOH . 
M 6 HOH A 61 861 120 HOH HOH . 
M 6 HOH A 62 862 146 HOH HOH . 
M 6 HOH A 63 863 69 HOH HOH . 
M 6 HOH A 64 864 150 HOH HOH . 
M 6 HOH A 65 865 136 HOH HOH . 
M 6 HOH A 66 866 108 HOH HOH . 
M 6 HOH A 67 867 126 HOH HOH . 
M 6 HOH A 68 868 135 HOH HOH . 
M 6 HOH A 69 869 112 HOH HOH . 
M 6 HOH A 70 870 26 HOH HOH . 
M 6 HOH A 71 871 53 HOH HOH . 
M 6 HOH A 72 872 107 HOH HOH . 
N 6 HOH B 1 801 99 HOH HOH . 
N 6 HOH B 2 802 116 HOH HOH . 
N 6 HOH B 3 803 127 HOH HOH . 
N 6 HOH B 4 804 111 HOH HOH . 
N 6 HOH B 5 805 64 HOH HOH . 
N 6 HOH B 6 806 32 HOH HOH . 
N 6 HOH B 7 807 118 HOH HOH . 
N 6 HOH B 8 808 14 HOH HOH . 
N 6 HOH B 9 809 41 HOH HOH . 
N 6 HOH B 10 810 65 HOH HOH . 
N 6 HOH B 11 811 95 HOH HOH . 
N 6 HOH B 12 812 137 HOH HOH . 
N 6 HOH B 13 813 105 HOH HOH . 
N 6 HOH B 14 814 54 HOH HOH . 
N 6 HOH B 15 815 121 HOH HOH . 
N 6 HOH B 16 816 59 HOH HOH . 
N 6 HOH B 17 817 18 HOH HOH . 
N 6 HOH B 18 818 49 HOH HOH . 
N 6 HOH B 19 819 10 HOH HOH . 
N 6 HOH B 20 820 31 HOH HOH . 
N 6 HOH B 21 821 115 HOH HOH . 
N 6 HOH B 22 822 3 HOH HOH . 
N 6 HOH B 23 823 42 HOH HOH . 
N 6 HOH B 24 824 86 HOH HOH . 
N 6 HOH B 25 825 8 HOH HOH . 
N 6 HOH B 26 826 25 HOH HOH . 
N 6 HOH B 27 827 2 HOH HOH . 
N 6 HOH B 28 828 22 HOH HOH . 
N 6 HOH B 29 829 44 HOH HOH . 
N 6 HOH B 30 830 60 HOH HOH . 
N 6 HOH B 31 831 34 HOH HOH . 
N 6 HOH B 32 832 78 HOH HOH . 
N 6 HOH B 33 833 63 HOH HOH . 
N 6 HOH B 34 834 134 HOH HOH . 
N 6 HOH B 35 835 94 HOH HOH . 
N 6 HOH B 36 836 91 HOH HOH . 
N 6 HOH B 37 837 11 HOH HOH . 
N 6 HOH B 38 838 43 HOH HOH . 
N 6 HOH B 39 839 141 HOH HOH . 
N 6 HOH B 40 840 117 HOH HOH . 
N 6 HOH B 41 841 101 HOH HOH . 
N 6 HOH B 42 842 132 HOH HOH . 
N 6 HOH B 43 843 140 HOH HOH . 
N 6 HOH B 44 844 51 HOH HOH . 
N 6 HOH B 45 845 15 HOH HOH . 
N 6 HOH B 46 846 124 HOH HOH . 
N 6 HOH B 47 847 70 HOH HOH . 
N 6 HOH B 48 848 90 HOH HOH . 
N 6 HOH B 49 849 75 HOH HOH . 
N 6 HOH B 50 850 102 HOH HOH . 
N 6 HOH B 51 851 152 HOH HOH . 
N 6 HOH B 52 852 104 HOH HOH . 
N 6 HOH B 53 853 52 HOH HOH . 
N 6 HOH B 54 854 46 HOH HOH . 
N 6 HOH B 55 855 93 HOH HOH . 
N 6 HOH B 56 856 143 HOH HOH . 
N 6 HOH B 57 857 130 HOH HOH . 
N 6 HOH B 58 858 109 HOH HOH . 
N 6 HOH B 59 859 128 HOH HOH . 
N 6 HOH B 60 860 97 HOH HOH . 
N 6 HOH B 61 861 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 -32.82 15.431 40.697 1 91.94 ? C1 EDO 702 A 1 
HETATM 2 O O1 EDO . . . D 2 -33.749 16.459 40.316 1 95.14 ? O1 EDO 702 A 1 
HETATM 3 C C2 EDO . . . D 2 -33.434 14.05 40.478 1 98.36 ? C2 EDO 702 A 1 
HETATM 4 O O2 EDO . . . D 2 -33.803 13.881 39.101 1 98.66 ? O2 EDO 702 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#