data_7LLH
#
_model_server_result.job_id            1OhCW8W3i6p-VKPvPBmBVg 
_model_server_result.datetime_utc      '2024-11-25 13:47:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7llh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    7LLH 
#
_exptl.entry_id    7LLH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              301.362 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         88.118 
_cell.angle_beta          88.375 
_cell.angle_gamma         85.479 
_cell.entry_id            7LLH 
_cell.length_a            34.609 
_cell.length_b            37.123 
_cell.length_c            83.655 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LLH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 40 A CYS 69 1_555 A SG CYS 209 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 B SG CYS 40 B CYS 69 1_555 B SG CYS 209 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A OG SER 41 A SER 70 1_555 C C7 IM2 . A IM2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? 
covale ? covale2 B OG SER 41 B SER 70 1_555 D C7 IM2 . B IM2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? 
#
_chem_comp.formula           'C12 H19 N3 O4 S' 
_chem_comp.formula_weight    301.362 
_chem_comp.id                IM2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'IMIPENEM, open form;N-FORMIMIDOYL-THIENAMYCINE, open form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 C6 IM2 sing 173 n n 
C7 O7 IM2 doub 174 n n 
C7 H71 IM2 sing 175 n n 
C2 C3 IM2 doub 176 n n 
C2 S21 IM2 sing 177 n n 
C2 C1 IM2 sing 178 n n 
C6 C5 IM2 sing 179 n n 
C6 C61 IM2 sing 180 n n 
C6 H61A IM2 sing 181 n n 
C5 N4 IM2 sing 182 n n 
C5 C1 IM2 sing 183 n n 
C5 H51 IM2 sing 184 n n 
C3 N4 IM2 sing 185 n n 
C3 C31 IM2 sing 186 n n 
C61 O62 IM2 sing 187 n n 
C61 C62 IM2 sing 188 n n 
C61 H61 IM2 sing 189 n n 
O62 HO6 IM2 sing 190 n n 
C62 H621 IM2 sing 191 n n 
C62 H622 IM2 sing 192 n n 
C62 H623 IM2 sing 193 n n 
N4 H41 IM2 sing 194 n n 
C31 O31 IM2 doub 195 n n 
C31 O32 IM2 sing 196 n n 
O32 H321 IM2 sing 197 n n 
S21 C22 IM2 sing 198 n n 
C22 C23 IM2 sing 199 n n 
C22 H221 IM2 sing 200 n n 
C22 H222 IM2 sing 201 n n 
C23 N24 IM2 sing 202 n n 
C23 H231 IM2 sing 203 n n 
C23 H232 IM2 sing 204 n n 
N24 C25 IM2 sing 205 n n 
N24 H241 IM2 sing 206 n n 
C25 N26 IM2 doub 207 n n 
C25 H25 IM2 sing 208 n n 
N26 H26 IM2 sing 209 n n 
C1 H11 IM2 sing 210 n n 
C1 H12 IM2 sing 211 n n 
#
_atom_sites.entry_id                     7LLH 
_atom_sites.fract_transf_matrix[1][1]    0.028894 
_atom_sites.fract_transf_matrix[1][2]    -0.002285 
_atom_sites.fract_transf_matrix[1][3]    -0.00075 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027022 
_atom_sites.fract_transf_matrix[2][3]    -0.00083 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011964 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IM2 A 1 301 301 IM2 IM2 . 
D 2 IM2 B 1 301 301 IM2 IM2 . 
E 3 HOH A 1 401 111 HOH HOH . 
E 3 HOH A 2 402 10 HOH HOH . 
E 3 HOH A 3 403 53 HOH HOH . 
E 3 HOH A 4 404 103 HOH HOH . 
E 3 HOH A 5 405 82 HOH HOH . 
E 3 HOH A 6 406 45 HOH HOH . 
E 3 HOH A 7 407 60 HOH HOH . 
E 3 HOH A 8 408 1 HOH HOH . 
E 3 HOH A 9 409 3 HOH HOH . 
E 3 HOH A 10 410 129 HOH HOH . 
E 3 HOH A 11 411 39 HOH HOH . 
E 3 HOH A 12 412 57 HOH HOH . 
E 3 HOH A 13 413 21 HOH HOH . 
E 3 HOH A 14 414 41 HOH HOH . 
E 3 HOH A 15 415 86 HOH HOH . 
E 3 HOH A 16 416 15 HOH HOH . 
E 3 HOH A 17 417 25 HOH HOH . 
E 3 HOH A 18 418 73 HOH HOH . 
E 3 HOH A 19 419 83 HOH HOH . 
E 3 HOH A 20 420 16 HOH HOH . 
E 3 HOH A 21 421 5 HOH HOH . 
E 3 HOH A 22 422 107 HOH HOH . 
E 3 HOH A 23 423 7 HOH HOH . 
E 3 HOH A 24 424 59 HOH HOH . 
E 3 HOH A 25 425 31 HOH HOH . 
E 3 HOH A 26 426 23 HOH HOH . 
E 3 HOH A 27 427 128 HOH HOH . 
E 3 HOH A 28 428 8 HOH HOH . 
E 3 HOH A 29 429 51 HOH HOH . 
E 3 HOH A 30 430 36 HOH HOH . 
E 3 HOH A 31 431 69 HOH HOH . 
E 3 HOH A 32 432 30 HOH HOH . 
E 3 HOH A 33 433 81 HOH HOH . 
E 3 HOH A 34 434 52 HOH HOH . 
E 3 HOH A 35 435 84 HOH HOH . 
E 3 HOH A 36 436 2 HOH HOH . 
E 3 HOH A 37 437 91 HOH HOH . 
E 3 HOH A 38 438 70 HOH HOH . 
E 3 HOH A 39 439 75 HOH HOH . 
E 3 HOH A 40 440 18 HOH HOH . 
E 3 HOH A 41 441 38 HOH HOH . 
E 3 HOH A 42 442 33 HOH HOH . 
E 3 HOH A 43 443 29 HOH HOH . 
E 3 HOH A 44 444 101 HOH HOH . 
E 3 HOH A 45 445 71 HOH HOH . 
E 3 HOH A 46 446 68 HOH HOH . 
E 3 HOH A 47 447 110 HOH HOH . 
E 3 HOH A 48 448 28 HOH HOH . 
E 3 HOH A 49 449 100 HOH HOH . 
E 3 HOH A 50 450 14 HOH HOH . 
E 3 HOH A 51 451 87 HOH HOH . 
E 3 HOH A 52 452 78 HOH HOH . 
E 3 HOH A 53 453 104 HOH HOH . 
E 3 HOH A 54 454 85 HOH HOH . 
E 3 HOH A 55 455 76 HOH HOH . 
E 3 HOH A 56 456 43 HOH HOH . 
E 3 HOH A 57 457 26 HOH HOH . 
E 3 HOH A 58 458 56 HOH HOH . 
E 3 HOH A 59 459 127 HOH HOH . 
E 3 HOH A 60 460 89 HOH HOH . 
E 3 HOH A 61 461 125 HOH HOH . 
E 3 HOH A 62 462 114 HOH HOH . 
E 3 HOH A 63 463 80 HOH HOH . 
E 3 HOH A 64 464 48 HOH HOH . 
E 3 HOH A 65 465 95 HOH HOH . 
E 3 HOH A 66 466 105 HOH HOH . 
E 3 HOH A 67 467 109 HOH HOH . 
E 3 HOH A 68 468 112 HOH HOH . 
E 3 HOH A 69 469 90 HOH HOH . 
E 3 HOH A 70 470 121 HOH HOH . 
E 3 HOH A 71 471 98 HOH HOH . 
E 3 HOH A 72 472 123 HOH HOH . 
E 3 HOH A 73 473 122 HOH HOH . 
E 3 HOH A 74 474 102 HOH HOH . 
E 3 HOH A 75 475 44 HOH HOH . 
E 3 HOH A 76 476 47 HOH HOH . 
E 3 HOH A 77 477 67 HOH HOH . 
E 3 HOH A 78 478 34 HOH HOH . 
F 3 HOH B 1 401 77 HOH HOH . 
F 3 HOH B 2 402 20 HOH HOH . 
F 3 HOH B 3 403 58 HOH HOH . 
F 3 HOH B 4 404 119 HOH HOH . 
F 3 HOH B 5 405 9 HOH HOH . 
F 3 HOH B 6 406 61 HOH HOH . 
F 3 HOH B 7 407 42 HOH HOH . 
F 3 HOH B 8 408 65 HOH HOH . 
F 3 HOH B 9 409 24 HOH HOH . 
F 3 HOH B 10 410 64 HOH HOH . 
F 3 HOH B 11 411 6 HOH HOH . 
F 3 HOH B 12 412 40 HOH HOH . 
F 3 HOH B 13 413 22 HOH HOH . 
F 3 HOH B 14 414 12 HOH HOH . 
F 3 HOH B 15 415 66 HOH HOH . 
F 3 HOH B 16 416 32 HOH HOH . 
F 3 HOH B 17 417 55 HOH HOH . 
F 3 HOH B 18 418 79 HOH HOH . 
F 3 HOH B 19 419 50 HOH HOH . 
F 3 HOH B 20 420 116 HOH HOH . 
F 3 HOH B 21 421 62 HOH HOH . 
F 3 HOH B 22 422 46 HOH HOH . 
F 3 HOH B 23 423 126 HOH HOH . 
F 3 HOH B 24 424 54 HOH HOH . 
F 3 HOH B 25 425 13 HOH HOH . 
F 3 HOH B 26 426 97 HOH HOH . 
F 3 HOH B 27 427 120 HOH HOH . 
F 3 HOH B 28 428 17 HOH HOH . 
F 3 HOH B 29 429 108 HOH HOH . 
F 3 HOH B 30 430 4 HOH HOH . 
F 3 HOH B 31 431 37 HOH HOH . 
F 3 HOH B 32 432 63 HOH HOH . 
F 3 HOH B 33 433 19 HOH HOH . 
F 3 HOH B 34 434 49 HOH HOH . 
F 3 HOH B 35 435 99 HOH HOH . 
F 3 HOH B 36 436 11 HOH HOH . 
F 3 HOH B 37 437 88 HOH HOH . 
F 3 HOH B 38 438 93 HOH HOH . 
F 3 HOH B 39 439 72 HOH HOH . 
F 3 HOH B 40 440 74 HOH HOH . 
F 3 HOH B 41 441 115 HOH HOH . 
F 3 HOH B 42 442 106 HOH HOH . 
F 3 HOH B 43 443 113 HOH HOH . 
F 3 HOH B 44 444 117 HOH HOH . 
F 3 HOH B 45 445 124 HOH HOH . 
F 3 HOH B 46 446 92 HOH HOH . 
F 3 HOH B 47 447 27 HOH HOH . 
F 3 HOH B 48 448 118 HOH HOH . 
F 3 HOH B 49 449 96 HOH HOH . 
F 3 HOH B 50 450 94 HOH HOH . 
F 3 HOH B 51 451 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 IM2 . . . D 2 1.426 -13.917 26.271 1 46.92 ? C7 IM2 301 B 1 
HETATM 2 C C2 IM2 . . . D 2 3.907 -16.052 28.814 1 68.94 ? C2 IM2 301 B 1 
HETATM 3 C C6 IM2 . . . D 2 2.943 -14.287 25.99 1 53.14 ? C6 IM2 301 B 1 
HETATM 4 C C5 IM2 . . . D 2 3.27 -15.524 26.61 1 59.13 ? C5 IM2 301 B 1 
HETATM 5 C C3 IM2 . . . D 2 2.418 -16.219 28.657 1 64.49 ? C3 IM2 301 B 1 
HETATM 6 O O7 IM2 . . . D 2 1.225 -13.156 27.162 1 46.06 ? O7 IM2 301 B 1 
HETATM 7 C C61 IM2 . . . D 2 3.248 -14.451 24.46 1 52.82 ? C61 IM2 301 B 1 
HETATM 8 O O62 IM2 . . . D 2 4.55 -14.898 24.278 1 53.09 ? O62 IM2 301 B 1 
HETATM 9 C C62 IM2 . . . D 2 3.113 -13.124 23.759 1 52.7 ? C62 IM2 301 B 1 
HETATM 10 N N4 IM2 . . . D 2 2.018 -16.022 27.409 1 61.58 ? N4 IM2 301 B 1 
HETATM 11 C C31 IM2 . . . D 2 1.452 -15.989 29.811 1 63.46 ? C31 IM2 301 B 1 
HETATM 12 O O31 IM2 . . . D 2 0.332 -16.559 29.791 1 63.22 ? O31 IM2 301 B 1 
HETATM 13 O O32 IM2 . . . D 2 1.767 -15.24 30.772 1 63.63 ? O32 IM2 301 B 1 
HETATM 14 S S21 IM2 . . . D 2 4.783 -17.463 29.556 1 78.61 ? S21 IM2 301 B 1 
HETATM 15 C C22 IM2 . . . D 2 5.593 -16.982 31.109 1 78.87 ? C22 IM2 301 B 1 
HETATM 16 C C23 IM2 . . . D 2 5.594 -15.462 31.231 1 77.06 ? C23 IM2 301 B 1 
HETATM 17 N N24 IM2 . . . D 2 6.158 -15.093 32.516 1 78.08 ? N24 IM2 301 B 1 
HETATM 18 C C25 IM2 . . . D 2 5.304 -14.946 33.681 1 78.37 ? C25 IM2 301 B 1 
HETATM 19 N N26 IM2 . . . D 2 5.802 -14.623 34.784 1 78.76 ? N26 IM2 301 B 1 
HETATM 20 C C1 IM2 . . . D 2 4.423 -15.441 27.681 1 63.85 ? C1 IM2 301 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#