data_7LLZ # _model_server_result.job_id FTMl-K3J7FJG5bSmu-shDg _model_server_result.datetime_utc '2025-08-24 05:36:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7llz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7LLZ # _exptl.entry_id 7LLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 462.607 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R)-1-(3-{5-[(acetylamino)methyl]thiophen-2-yl}phenyl)ethyl]-5-[(azetidin-3-yl)amino]-2-methylbenzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.38 _cell.angle_gamma 90 _cell.entry_id 7LLZ _cell.length_a 46.758 _cell.length_b 146.155 _cell.length_c 60.299 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 190 A CYS 189 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc2 A SG CYS 193 A CYS 192 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc3 A SG CYS 225 A CYS 224 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc4 A SG CYS 227 A CYS 226 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 B SG CYS 190 B CYS 189 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc6 B SG CYS 193 B CYS 192 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 B SG CYS 225 B CYS 224 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc8 B SG CYS 227 B CYS 226 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'C26 H30 N4 O2 S' _chem_comp.formula_weight 462.607 _chem_comp.id Y61 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R)-1-(3-{5-[(acetylamino)methyl]thiophen-2-yl}phenyl)ethyl]-5-[(azetidin-3-yl)amino]-2-methylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 Y61 sing 380 n n C02 N03 Y61 sing 381 n n C02 C18 Y61 sing 382 n n N03 C04 Y61 sing 383 n n C19 C18 Y61 doub 384 n y C19 C20 Y61 sing 385 n y C18 C33 Y61 sing 386 n y C07 C06 Y61 sing 387 n n C20 C21 Y61 doub 388 n y C04 C05 Y61 sing 389 n n C04 O17 Y61 doub 390 n n C06 C05 Y61 doub 391 n y C06 C08 Y61 sing 392 n y N14 C15 Y61 sing 393 n n N14 C13 Y61 sing 394 n n C33 C22 Y61 doub 395 n y C05 C16 Y61 sing 396 n y C08 C09 Y61 doub 397 n y C15 C12 Y61 sing 398 n n C16 C10 Y61 doub 399 n y C21 C22 Y61 sing 400 n y C09 C10 Y61 sing 401 n y C22 C23 Y61 sing 402 n n C10 N11 Y61 sing 403 n n C13 C12 Y61 sing 404 n n N11 C12 Y61 sing 405 n n C23 S32 Y61 sing 406 n y C23 C24 Y61 doub 407 n y S32 C26 Y61 sing 408 n y C24 C25 Y61 sing 409 n y C26 C25 Y61 doub 410 n y C26 C27 Y61 sing 411 n n N28 C27 Y61 sing 412 n n N28 C29 Y61 sing 413 n n O31 C29 Y61 doub 414 n n C29 C30 Y61 sing 415 n n N03 H1 Y61 sing 416 n n C07 H2 Y61 sing 417 n n C07 H3 Y61 sing 418 n n C07 H4 Y61 sing 419 n n C08 H5 Y61 sing 420 n n C09 H6 Y61 sing 421 n n C12 H7 Y61 sing 422 n n C13 H8 Y61 sing 423 n n C13 H9 Y61 sing 424 n n C15 H10 Y61 sing 425 n n C15 H11 Y61 sing 426 n n C16 H12 Y61 sing 427 n n C01 H13 Y61 sing 428 n n C01 H14 Y61 sing 429 n n C01 H15 Y61 sing 430 n n C02 H16 Y61 sing 431 n n N11 H17 Y61 sing 432 n n N14 H18 Y61 sing 433 n n C19 H20 Y61 sing 434 n n C20 H21 Y61 sing 435 n n C21 H22 Y61 sing 436 n n C24 H23 Y61 sing 437 n n C25 H24 Y61 sing 438 n n C27 H25 Y61 sing 439 n n C27 H26 Y61 sing 440 n n N28 H27 Y61 sing 441 n n C30 H28 Y61 sing 442 n n C30 H29 Y61 sing 443 n n C30 H30 Y61 sing 444 n n C33 H31 Y61 sing 445 n n # _atom_sites.entry_id 7LLZ _atom_sites.fract_transf_matrix[1][1] 0.021387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003534 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y61 A 1 401 401 Y61 X69 . D 3 ZN A 1 402 402 ZN ZN . E 4 SO4 A 1 403 404 SO4 SO4 . F 4 SO4 A 1 404 406 SO4 SO4 . G 4 SO4 A 1 405 408 SO4 SO4 . H 2 Y61 B 1 401 401 Y61 X69 . I 3 ZN B 1 402 402 ZN ZN . J 4 SO4 B 1 403 405 SO4 SO4 . K 4 SO4 B 1 404 407 SO4 SO4 . L 4 SO4 B 1 405 409 SO4 SO4 . M 5 HOH A 1 501 7 HOH HOH . M 5 HOH A 2 502 11 HOH HOH . M 5 HOH A 3 503 26 HOH HOH . M 5 HOH A 4 504 23 HOH HOH . M 5 HOH A 5 505 22 HOH HOH . M 5 HOH A 6 506 10 HOH HOH . M 5 HOH A 7 507 5 HOH HOH . M 5 HOH A 8 508 1 HOH HOH . M 5 HOH A 9 509 9 HOH HOH . M 5 HOH A 10 510 16 HOH HOH . M 5 HOH A 11 511 2 HOH HOH . M 5 HOH A 12 512 20 HOH HOH . M 5 HOH A 13 513 18 HOH HOH . M 5 HOH A 14 514 24 HOH HOH . N 5 HOH B 1 501 17 HOH HOH . N 5 HOH B 2 502 19 HOH HOH . N 5 HOH B 3 503 8 HOH HOH . N 5 HOH B 4 504 3 HOH HOH . N 5 HOH B 5 505 25 HOH HOH . N 5 HOH B 6 506 12 HOH HOH . N 5 HOH B 7 507 6 HOH HOH . N 5 HOH B 8 508 15 HOH HOH . N 5 HOH B 9 509 14 HOH HOH . N 5 HOH B 10 510 4 HOH HOH . N 5 HOH B 11 511 21 HOH HOH . N 5 HOH B 12 512 13 HOH HOH . N 5 HOH B 13 513 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N03 Y61 . . . C 2 2.132 10.491 34.088 1 28.63 ? N03 Y61 401 A 1 HETATM 2 C C05 Y61 . . . C 2 2.058 8.361 35.593 1 28.9 ? C05 Y61 401 A 1 HETATM 3 C C06 Y61 . . . C 2 0.996 7.479 35.413 1 29.63 ? C06 Y61 401 A 1 HETATM 4 C C07 Y61 . . . C 2 -0.325 7.919 34.888 1 30.44 ? C07 Y61 401 A 1 HETATM 5 C C08 Y61 . . . C 2 1.193 6.14 35.728 1 29.78 ? C08 Y61 401 A 1 HETATM 6 C C09 Y61 . . . C 2 2.366 5.64 36.211 1 30.5 ? C09 Y61 401 A 1 HETATM 7 C C10 Y61 . . . C 2 3.474 6.464 36.422 1 31.75 ? C10 Y61 401 A 1 HETATM 8 C C12 Y61 . . . C 2 5.953 6.359 37.123 1 36.95 ? C12 Y61 401 A 1 HETATM 9 C C13 Y61 . . . C 2 7.103 5.286 36.945 1 38.67 ? C13 Y61 401 A 1 HETATM 10 C C15 Y61 . . . C 2 6.623 7.081 35.866 1 38.39 ? C15 Y61 401 A 1 HETATM 11 C C16 Y61 . . . C 2 3.287 7.847 36.105 1 30.21 ? C16 Y61 401 A 1 HETATM 12 C C18 Y61 . . . C 2 2.758 12.827 34.582 1 30.28 ? C18 Y61 401 A 1 HETATM 13 C C01 Y61 . . . C 2 2.074 12.155 32.235 1 28.3 ? C01 Y61 401 A 1 HETATM 14 C C02 Y61 . . . C 2 1.902 11.914 33.732 1 28.89 ? C02 Y61 401 A 1 HETATM 15 C C04 Y61 . . . C 2 1.824 9.799 35.265 1 27.98 ? C04 Y61 401 A 1 HETATM 16 N N11 Y61 . . . C 2 4.654 5.833 36.96 1 34.62 ? N11 Y61 401 A 1 HETATM 17 N N14 Y61 . . . C 2 7.256 5.754 35.493 1 40.19 ? N14 Y61 401 A 1 HETATM 18 O O17 Y61 . . . C 2 1.2 10.438 36.152 1 25.64 ? O17 Y61 401 A 1 HETATM 19 C C19 Y61 . . . C 2 4.143 12.764 34.408 1 30.55 ? C19 Y61 401 A 1 HETATM 20 C C20 Y61 . . . C 2 4.972 13.587 35.169 1 31.73 ? C20 Y61 401 A 1 HETATM 21 C C21 Y61 . . . C 2 4.456 14.476 36.127 1 33.1 ? C21 Y61 401 A 1 HETATM 22 C C22 Y61 . . . C 2 3.052 14.597 36.358 1 34.52 ? C22 Y61 401 A 1 HETATM 23 C C23 Y61 . . . C 2 2.495 15.508 37.397 1 36.28 ? C23 Y61 401 A 1 HETATM 24 C C24 Y61 . . . C 2 3.066 16.166 38.437 1 38.04 ? C24 Y61 401 A 1 HETATM 25 C C25 Y61 . . . C 2 2.2 16.958 39.301 1 41.38 ? C25 Y61 401 A 1 HETATM 26 C C26 Y61 . . . C 2 0.88 16.926 38.968 1 44.44 ? C26 Y61 401 A 1 HETATM 27 C C27 Y61 . . . C 2 -0.34 17.609 39.605 1 48.3 ? C27 Y61 401 A 1 HETATM 28 N N28 Y61 . . . C 2 -0.704 19.034 39.255 1 52 ? N28 Y61 401 A 1 HETATM 29 C C29 Y61 . . . C 2 -1.226 20.033 40.084 1 53.23 ? C29 Y61 401 A 1 HETATM 30 C C30 Y61 . . . C 2 -1.505 19.824 41.514 1 53.48 ? C30 Y61 401 A 1 HETATM 31 O O31 Y61 . . . C 2 -1.487 21.193 39.646 1 53.7 ? O31 Y61 401 A 1 HETATM 32 S S32 Y61 . . . C 2 0.747 15.861 37.527 1 40.08 ? S32 Y61 401 A 1 HETATM 33 C C33 Y61 . . . C 2 2.261 13.724 35.551 1 32.25 ? C33 Y61 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 33 #