data_7LLZ
#
_model_server_result.job_id            IIurJQUPG1FBH0d2IOYDPA 
_model_server_result.datetime_utc      '2025-08-24 14:33:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7llz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    7LLZ 
#
_exptl.entry_id    7LLZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              462.607 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(1R)-1-(3-{5-[(acetylamino)methyl]thiophen-2-yl}phenyl)ethyl]-5-[(azetidin-3-yl)amino]-2-methylbenzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.38 
_cell.angle_gamma         90 
_cell.entry_id            7LLZ 
_cell.length_a            46.758 
_cell.length_b            146.155 
_cell.length_c            60.299 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LLZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 190 A CYS 189 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc2 A SG CYS 193 A CYS 192 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc3 A SG CYS 225 A CYS 224 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc4 A SG CYS 227 A CYS 226 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc5 B SG CYS 190 B CYS 189 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc6 B SG CYS 193 B CYS 192 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc7 B SG CYS 225 B CYS 224 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc8 B SG CYS 227 B CYS 226 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
#
_chem_comp.formula           'C26 H30 N4 O2 S' 
_chem_comp.formula_weight    462.607 
_chem_comp.id                Y61 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(1R)-1-(3-{5-[(acetylamino)methyl]thiophen-2-yl}phenyl)ethyl]-5-[(azetidin-3-yl)amino]-2-methylbenzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 Y61 sing 380 n n 
C02 N03 Y61 sing 381 n n 
C02 C18 Y61 sing 382 n n 
N03 C04 Y61 sing 383 n n 
C19 C18 Y61 doub 384 n y 
C19 C20 Y61 sing 385 n y 
C18 C33 Y61 sing 386 n y 
C07 C06 Y61 sing 387 n n 
C20 C21 Y61 doub 388 n y 
C04 C05 Y61 sing 389 n n 
C04 O17 Y61 doub 390 n n 
C06 C05 Y61 doub 391 n y 
C06 C08 Y61 sing 392 n y 
N14 C15 Y61 sing 393 n n 
N14 C13 Y61 sing 394 n n 
C33 C22 Y61 doub 395 n y 
C05 C16 Y61 sing 396 n y 
C08 C09 Y61 doub 397 n y 
C15 C12 Y61 sing 398 n n 
C16 C10 Y61 doub 399 n y 
C21 C22 Y61 sing 400 n y 
C09 C10 Y61 sing 401 n y 
C22 C23 Y61 sing 402 n n 
C10 N11 Y61 sing 403 n n 
C13 C12 Y61 sing 404 n n 
N11 C12 Y61 sing 405 n n 
C23 S32 Y61 sing 406 n y 
C23 C24 Y61 doub 407 n y 
S32 C26 Y61 sing 408 n y 
C24 C25 Y61 sing 409 n y 
C26 C25 Y61 doub 410 n y 
C26 C27 Y61 sing 411 n n 
N28 C27 Y61 sing 412 n n 
N28 C29 Y61 sing 413 n n 
O31 C29 Y61 doub 414 n n 
C29 C30 Y61 sing 415 n n 
N03 H1 Y61 sing 416 n n 
C07 H2 Y61 sing 417 n n 
C07 H3 Y61 sing 418 n n 
C07 H4 Y61 sing 419 n n 
C08 H5 Y61 sing 420 n n 
C09 H6 Y61 sing 421 n n 
C12 H7 Y61 sing 422 n n 
C13 H8 Y61 sing 423 n n 
C13 H9 Y61 sing 424 n n 
C15 H10 Y61 sing 425 n n 
C15 H11 Y61 sing 426 n n 
C16 H12 Y61 sing 427 n n 
C01 H13 Y61 sing 428 n n 
C01 H14 Y61 sing 429 n n 
C01 H15 Y61 sing 430 n n 
C02 H16 Y61 sing 431 n n 
N11 H17 Y61 sing 432 n n 
N14 H18 Y61 sing 433 n n 
C19 H20 Y61 sing 434 n n 
C20 H21 Y61 sing 435 n n 
C21 H22 Y61 sing 436 n n 
C24 H23 Y61 sing 437 n n 
C25 H24 Y61 sing 438 n n 
C27 H25 Y61 sing 439 n n 
C27 H26 Y61 sing 440 n n 
N28 H27 Y61 sing 441 n n 
C30 H28 Y61 sing 442 n n 
C30 H29 Y61 sing 443 n n 
C30 H30 Y61 sing 444 n n 
C33 H31 Y61 sing 445 n n 
#
_atom_sites.entry_id                     7LLZ 
_atom_sites.fract_transf_matrix[1][1]    0.021387 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003534 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006842 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y61 A 1 401 401 Y61 X69 . 
D 3 ZN A 1 402 402 ZN ZN . 
E 4 SO4 A 1 403 404 SO4 SO4 . 
F 4 SO4 A 1 404 406 SO4 SO4 . 
G 4 SO4 A 1 405 408 SO4 SO4 . 
H 2 Y61 B 1 401 401 Y61 X69 . 
I 3 ZN B 1 402 402 ZN ZN . 
J 4 SO4 B 1 403 405 SO4 SO4 . 
K 4 SO4 B 1 404 407 SO4 SO4 . 
L 4 SO4 B 1 405 409 SO4 SO4 . 
M 5 HOH A 1 501 7 HOH HOH . 
M 5 HOH A 2 502 11 HOH HOH . 
M 5 HOH A 3 503 26 HOH HOH . 
M 5 HOH A 4 504 23 HOH HOH . 
M 5 HOH A 5 505 22 HOH HOH . 
M 5 HOH A 6 506 10 HOH HOH . 
M 5 HOH A 7 507 5 HOH HOH . 
M 5 HOH A 8 508 1 HOH HOH . 
M 5 HOH A 9 509 9 HOH HOH . 
M 5 HOH A 10 510 16 HOH HOH . 
M 5 HOH A 11 511 2 HOH HOH . 
M 5 HOH A 12 512 20 HOH HOH . 
M 5 HOH A 13 513 18 HOH HOH . 
M 5 HOH A 14 514 24 HOH HOH . 
N 5 HOH B 1 501 17 HOH HOH . 
N 5 HOH B 2 502 19 HOH HOH . 
N 5 HOH B 3 503 8 HOH HOH . 
N 5 HOH B 4 504 3 HOH HOH . 
N 5 HOH B 5 505 25 HOH HOH . 
N 5 HOH B 6 506 12 HOH HOH . 
N 5 HOH B 7 507 6 HOH HOH . 
N 5 HOH B 8 508 15 HOH HOH . 
N 5 HOH B 9 509 14 HOH HOH . 
N 5 HOH B 10 510 4 HOH HOH . 
N 5 HOH B 11 511 21 HOH HOH . 
N 5 HOH B 12 512 13 HOH HOH . 
N 5 HOH B 13 513 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N03 Y61 . . . H 2 7.586 -66.837 -1.885 1 34.77 ? N03 Y61 401 B 1 
HETATM 2 C C05 Y61 . . . H 2 8.093 -64.707 -3.344 1 33.23 ? C05 Y61 401 B 1 
HETATM 3 C C06 Y61 . . . H 2 7.018 -63.832 -3.516 1 33.68 ? C06 Y61 401 B 1 
HETATM 4 C C07 Y61 . . . H 2 5.596 -64.263 -3.472 1 34.85 ? C07 Y61 401 B 1 
HETATM 5 C C08 Y61 . . . H 2 7.3 -62.506 -3.731 1 34.52 ? C08 Y61 401 B 1 
HETATM 6 C C09 Y61 . . . H 2 8.568 -61.989 -3.791 1 35.02 ? C09 Y61 401 B 1 
HETATM 7 C C10 Y61 . . . H 2 9.691 -62.78 -3.633 1 34.61 ? C10 Y61 401 B 1 
HETATM 8 C C12 Y61 . . . H 2 12.289 -62.619 -3.549 1 39.9 ? C12 Y61 401 B 1 
HETATM 9 C C13 Y61 . . . H 2 13.435 -61.53 -3.268 1 40.12 ? C13 Y61 401 B 1 
HETATM 10 C C15 Y61 . . . H 2 12.682 -63.242 -2.128 1 41.11 ? C15 Y61 401 B 1 
HETATM 11 C C16 Y61 . . . H 2 9.423 -64.167 -3.404 1 33.94 ? C16 Y61 401 B 1 
HETATM 12 C C18 Y61 . . . H 2 8.288 -69.252 -2.107 1 38.23 ? C18 Y61 401 B 1 
HETATM 13 C C01 Y61 . . . H 2 6.929 -68.436 -0.097 1 36.92 ? C01 Y61 401 B 1 
HETATM 14 C C02 Y61 . . . H 2 7.227 -68.264 -1.587 1 36.74 ? C02 Y61 401 B 1 
HETATM 15 C C04 Y61 . . . H 2 7.766 -66.164 -3.111 1 32.97 ? C04 Y61 401 B 1 
HETATM 16 N N11 Y61 . . . H 2 10.973 -62.098 -3.72 1 36.7 ? N11 Y61 401 B 1 
HETATM 17 N N14 Y61 . . . H 2 13.861 -62.269 -2.019 1 42.42 ? N14 Y61 401 B 1 
HETATM 18 O O17 Y61 . . . H 2 7.545 -66.822 -4.161 1 30.25 ? O17 Y61 401 B 1 
HETATM 19 C C19 Y61 . . . H 2 9.525 -69.24 -1.476 1 38.85 ? C19 Y61 401 B 1 
HETATM 20 C C20 Y61 . . . H 2 10.524 -70.098 -1.919 1 40.26 ? C20 Y61 401 B 1 
HETATM 21 C C21 Y61 . . . H 2 10.33 -70.977 -2.993 1 41.13 ? C21 Y61 401 B 1 
HETATM 22 C C22 Y61 . . . H 2 9.104 -71.054 -3.68 1 42.42 ? C22 Y61 401 B 1 
HETATM 23 C C23 Y61 . . . H 2 8.931 -71.951 -4.852 1 45.63 ? C23 Y61 401 B 1 
HETATM 24 C C24 Y61 . . . H 2 9.782 -72.727 -5.569 1 47.03 ? C24 Y61 401 B 1 
HETATM 25 C C25 Y61 . . . H 2 9.239 -73.436 -6.731 1 51.19 ? C25 Y61 401 B 1 
HETATM 26 C C26 Y61 . . . H 2 7.914 -73.221 -6.97 1 55.98 ? C26 Y61 401 B 1 
HETATM 27 C C27 Y61 . . . H 2 6.908 -73.722 -8.07 1 63.88 ? C27 Y61 401 B 1 
HETATM 28 N N28 Y61 . . . H 2 6.683 -75.156 -8.46 1 68.86 ? N28 Y61 401 B 1 
HETATM 29 C C29 Y61 . . . H 2 7.586 -76.132 -8.891 1 72.96 ? C29 Y61 401 B 1 
HETATM 30 C C30 Y61 . . . H 2 9.083 -75.931 -9.048 1 73.02 ? C30 Y61 401 B 1 
HETATM 31 O O31 Y61 . . . H 2 7.137 -77.283 -9.171 1 71.46 ? O31 Y61 401 B 1 
HETATM 32 S S32 Y61 . . . H 2 7.381 -72.086 -5.689 1 49.97 ? S32 Y61 401 B 1 
HETATM 33 C C33 Y61 . . . H 2 8.121 -70.143 -3.197 1 39.44 ? C33 Y61 401 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#