data_7LM2 # _model_server_result.job_id tLIhQK0fI9jd6k1-ldMQjQ _model_server_result.datetime_utc '2024-10-10 08:19:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 7LM2 # _exptl.entry_id 7LM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.458 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cyclopropyl[(3S)-3-{[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]amino}pyrrolidin-1-yl]methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LM2 _cell.length_a 91.284 _cell.length_b 109.308 _cell.length_c 142.579 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H24 N8 O' _chem_comp.formula_weight 392.458 _chem_comp.id Y5Y _chem_comp.mon_nstd_flag . _chem_comp.name cyclopropyl[(3S)-3-{[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]amino}pyrrolidin-1-yl]methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 Y5Y sing 389 n n N7 C8 Y5Y doub 390 n y N7 C6 Y5Y sing 391 n y C8 N10 Y5Y sing 392 n y C6 C5 Y5Y doub 393 n y N10 C11 Y5Y doub 394 n y C25 C23 Y5Y sing 395 n n C25 C24 Y5Y sing 396 n n C2 N3 Y5Y sing 397 n n C2 C1 Y5Y sing 398 n n C5 C11 Y5Y sing 399 n y C5 C4 Y5Y sing 400 n n C23 C24 Y5Y sing 401 n n C23 C21 Y5Y sing 402 n n N3 C4 Y5Y sing 403 n y N3 C30 Y5Y sing 404 n y C4 N12 Y5Y doub 405 n y O22 C21 Y5Y doub 406 n n C30 N29 Y5Y doub 407 n y C30 C13 Y5Y sing 408 n y N12 C13 Y5Y sing 409 n y C21 N20 Y5Y sing 410 n n N29 C28 Y5Y sing 411 n y C13 C14 Y5Y doub 412 n y C28 N27 Y5Y doub 413 n y N20 C26 Y5Y sing 414 n n N20 C19 Y5Y sing 415 n n C14 N27 Y5Y sing 416 n y C14 N15 Y5Y sing 417 n n C26 C16 Y5Y sing 418 n n N15 C16 Y5Y sing 419 n n C19 C18 Y5Y sing 420 n n C16 C18 Y5Y sing 421 n n C1 H1 Y5Y sing 422 n n C1 H2 Y5Y sing 423 n n C1 H3 Y5Y sing 424 n n C2 H4 Y5Y sing 425 n n C2 H5 Y5Y sing 426 n n C6 H6 Y5Y sing 427 n n C11 H7 Y5Y sing 428 n n C16 H8 Y5Y sing 429 n n C18 H9 Y5Y sing 430 n n C18 H10 Y5Y sing 431 n n C19 H11 Y5Y sing 432 n n C19 H12 Y5Y sing 433 n n C23 H13 Y5Y sing 434 n n C24 H14 Y5Y sing 435 n n C24 H15 Y5Y sing 436 n n C9 H16 Y5Y sing 437 n n C9 H17 Y5Y sing 438 n n C9 H18 Y5Y sing 439 n n N15 H19 Y5Y sing 440 n n C25 H20 Y5Y sing 441 n n C25 H21 Y5Y sing 442 n n C26 H22 Y5Y sing 443 n n C26 H23 Y5Y sing 444 n n C28 H24 Y5Y sing 445 n n # _atom_sites.entry_id 7LM2 _atom_sites.fract_transf_matrix[1][1] 0.010955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y5Y A 1 1101 1 Y5Y INX . D 4 EDO A 1 1102 1 EDO EDO . E 5 SO4 A 1 1103 2 SO4 SO4 . F 6 HOH A 1 1201 13 HOH HOH . F 6 HOH A 2 1202 4 HOH HOH . F 6 HOH A 3 1203 25 HOH HOH . F 6 HOH A 4 1204 22 HOH HOH . F 6 HOH A 5 1205 17 HOH HOH . F 6 HOH A 6 1206 24 HOH HOH . G 6 HOH B 1 601 10 HOH HOH . G 6 HOH B 2 602 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Y5Y . . . C 3 32.617 16.069 32.943 1 67.65 ? C1 Y5Y 1101 A 1 HETATM 2 C C2 Y5Y . . . C 3 33.565 15.598 31.844 1 69.14 ? C2 Y5Y 1101 A 1 HETATM 3 C C4 Y5Y . . . C 3 34.942 13.524 32.43 1 69.13 ? C4 Y5Y 1101 A 1 HETATM 4 C C5 Y5Y . . . C 3 34.108 12.422 31.9 1 68.58 ? C5 Y5Y 1101 A 1 HETATM 5 C C6 Y5Y . . . C 3 34.752 11.32 31.321 1 70.1 ? C6 Y5Y 1101 A 1 HETATM 6 C C8 Y5Y . . . C 3 32.712 10.32 30.916 1 70.58 ? C8 Y5Y 1101 A 1 HETATM 7 N N10 Y5Y . . . C 3 32.051 11.338 31.457 1 70.55 ? N10 Y5Y 1101 A 1 HETATM 8 C C11 Y5Y . . . C 3 32.701 12.389 31.956 1 68.56 ? C11 Y5Y 1101 A 1 HETATM 9 C C16 Y5Y . . . C 3 39.938 14.239 35.25 1 73.91 ? C16 Y5Y 1101 A 1 HETATM 10 C C18 Y5Y . . . C 3 40.372 13.011 36.086 1 75.8 ? C18 Y5Y 1101 A 1 HETATM 11 C C19 Y5Y . . . C 3 41.122 12.152 35.041 1 76.42 ? C19 Y5Y 1101 A 1 HETATM 12 C C21 Y5Y . . . C 3 42.533 12.756 33.076 1 81.12 ? C21 Y5Y 1101 A 1 HETATM 13 C C23 Y5Y . . . C 3 43.047 13.782 32.096 1 82.59 ? C23 Y5Y 1101 A 1 HETATM 14 C C24 Y5Y . . . C 3 43.967 14.908 32.572 1 83.8 ? C24 Y5Y 1101 A 1 HETATM 15 C C30 Y5Y . . . C 3 35.755 15.497 33.017 1 68.63 ? C30 Y5Y 1101 A 1 HETATM 16 N N3 Y5Y . . . C 3 34.697 14.874 32.41 1 69.05 ? N3 Y5Y 1101 A 1 HETATM 17 N N7 Y5Y . . . C 3 34.034 10.309 30.846 1 71.68 ? N7 Y5Y 1101 A 1 HETATM 18 C C9 Y5Y . . . C 3 31.955 9.142 30.362 1 71.07 ? C9 Y5Y 1101 A 1 HETATM 19 N N12 Y5Y . . . C 3 36.09 13.315 33.033 1 72.2 ? N12 Y5Y 1101 A 1 HETATM 20 C C13 Y5Y . . . C 3 36.642 14.486 33.414 1 69.25 ? C13 Y5Y 1101 A 1 HETATM 21 C C14 Y5Y . . . C 3 37.833 14.864 34.075 1 69.09 ? C14 Y5Y 1101 A 1 HETATM 22 N N15 Y5Y . . . C 3 38.739 13.899 34.476 1 72.84 ? N15 Y5Y 1101 A 1 HETATM 23 N N20 Y5Y . . . C 3 41.675 13.103 34.057 1 77.54 ? N20 Y5Y 1101 A 1 HETATM 24 O O22 Y5Y . . . C 3 42.881 11.594 32.963 1 81.4 ? O22 Y5Y 1101 A 1 HETATM 25 C C25 Y5Y . . . C 3 44.54 13.732 31.772 1 83.46 ? C25 Y5Y 1101 A 1 HETATM 26 C C26 Y5Y . . . C 3 41.145 14.455 34.325 1 73.98 ? C26 Y5Y 1101 A 1 HETATM 27 N N27 Y5Y . . . C 3 38.066 16.159 34.278 1 69.38 ? N27 Y5Y 1101 A 1 HETATM 28 C C28 Y5Y . . . C 3 37.196 17.076 33.894 1 71.53 ? C28 Y5Y 1101 A 1 HETATM 29 N N29 Y5Y . . . C 3 36.068 16.767 33.278 1 71.32 ? N29 Y5Y 1101 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #