data_7LMD # _model_server_result.job_id 2i09tbW6-QQ9oPasjBWKmw _model_server_result.datetime_utc '2024-11-21 10:20:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7LMD # _exptl.entry_id 7LMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.483 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-pyrazol-4-yl)phenyl]-~{N}-(thiophen-3-ylmethyl)ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.01 _cell.angle_gamma 90 _cell.entry_id 7LMD _cell.length_a 115.159 _cell.length_b 54.341 _cell.length_c 44.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H18 N6 O S' _chem_comp.formula_weight 414.483 _chem_comp.id Y6A _chem_comp.mon_nstd_flag . _chem_comp.name 2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-pyrazol-4-yl)phenyl]-~{N}-(thiophen-3-ylmethyl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C07 Y6A doub 376 n y C08 C09 Y6A sing 377 n y C07 C06 Y6A sing 378 n y C09 C10 Y6A doub 379 n y C06 C05 Y6A doub 380 n y C25 N26 Y6A sing 381 n y C25 C24 Y6A doub 382 n y C10 C05 Y6A sing 383 n y C10 N11 Y6A sing 384 n y N26 N27 Y6A sing 385 n y C05 N04 Y6A sing 386 n y C22 C21 Y6A doub 387 n y C22 C23 Y6A sing 388 n y N11 N12 Y6A doub 389 n y C24 C23 Y6A sing 390 n n C24 C28 Y6A sing 391 n y N04 C03 Y6A sing 392 n n N04 N12 Y6A sing 393 n y C21 C20 Y6A sing 394 n y N27 C28 Y6A doub 395 n y C23 C29 Y6A doub 396 n y C03 C02 Y6A sing 397 n n C20 N13 Y6A sing 398 n n C20 C30 Y6A doub 399 n y C02 N13 Y6A sing 400 n n C02 O01 Y6A doub 401 n n C29 C30 Y6A sing 402 n y N13 C14 Y6A sing 403 n n C14 C15 Y6A sing 404 n n C15 C19 Y6A sing 405 n y C15 C16 Y6A doub 406 n y C19 C18 Y6A doub 407 n y C16 S17 Y6A sing 408 n y C18 S17 Y6A sing 409 n y C03 H1 Y6A sing 410 n n C03 H2 Y6A sing 411 n n C06 H3 Y6A sing 412 n n C07 H4 Y6A sing 413 n n C08 H5 Y6A sing 414 n n C09 H6 Y6A sing 415 n n C14 H7 Y6A sing 416 n n C14 H8 Y6A sing 417 n n C16 H9 Y6A sing 418 n n C18 H10 Y6A sing 419 n n C19 H11 Y6A sing 420 n n C21 H12 Y6A sing 421 n n C22 H13 Y6A sing 422 n n C25 H14 Y6A sing 423 n n N26 H15 Y6A sing 424 n n C28 H16 Y6A sing 425 n n C29 H17 Y6A sing 426 n n C30 H18 Y6A sing 427 n n # _atom_sites.entry_id 7LMD _atom_sites.fract_transf_matrix[1][1] 0.008684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00169 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y6A A 1 401 307 Y6A 979 . C 3 HOH A 1 501 75 HOH HOH . C 3 HOH A 2 502 145 HOH HOH . C 3 HOH A 3 503 191 HOH HOH . C 3 HOH A 4 504 34 HOH HOH . C 3 HOH A 5 505 105 HOH HOH . C 3 HOH A 6 506 101 HOH HOH . C 3 HOH A 7 507 151 HOH HOH . C 3 HOH A 8 508 195 HOH HOH . C 3 HOH A 9 509 29 HOH HOH . C 3 HOH A 10 510 47 HOH HOH . C 3 HOH A 11 511 165 HOH HOH . C 3 HOH A 12 512 95 HOH HOH . C 3 HOH A 13 513 121 HOH HOH . C 3 HOH A 14 514 40 HOH HOH . C 3 HOH A 15 515 91 HOH HOH . C 3 HOH A 16 516 10 HOH HOH . C 3 HOH A 17 517 59 HOH HOH . C 3 HOH A 18 518 27 HOH HOH . C 3 HOH A 19 519 90 HOH HOH . C 3 HOH A 20 520 9 HOH HOH . C 3 HOH A 21 521 85 HOH HOH . C 3 HOH A 22 522 71 HOH HOH . C 3 HOH A 23 523 81 HOH HOH . C 3 HOH A 24 524 39 HOH HOH . C 3 HOH A 25 525 74 HOH HOH . C 3 HOH A 26 526 99 HOH HOH . C 3 HOH A 27 527 143 HOH HOH . C 3 HOH A 28 528 129 HOH HOH . C 3 HOH A 29 529 218 HOH HOH . C 3 HOH A 30 530 12 HOH HOH . C 3 HOH A 31 531 82 HOH HOH . C 3 HOH A 32 532 28 HOH HOH . C 3 HOH A 33 533 159 HOH HOH . C 3 HOH A 34 534 69 HOH HOH . C 3 HOH A 35 535 7 HOH HOH . C 3 HOH A 36 536 86 HOH HOH . C 3 HOH A 37 537 4 HOH HOH . C 3 HOH A 38 538 1 HOH HOH . C 3 HOH A 39 539 25 HOH HOH . C 3 HOH A 40 540 67 HOH HOH . C 3 HOH A 41 541 96 HOH HOH . C 3 HOH A 42 542 193 HOH HOH . C 3 HOH A 43 543 41 HOH HOH . C 3 HOH A 44 544 189 HOH HOH . C 3 HOH A 45 545 112 HOH HOH . C 3 HOH A 46 546 149 HOH HOH . C 3 HOH A 47 547 44 HOH HOH . C 3 HOH A 48 548 153 HOH HOH . C 3 HOH A 49 549 178 HOH HOH . C 3 HOH A 50 550 93 HOH HOH . C 3 HOH A 51 551 164 HOH HOH . C 3 HOH A 52 552 240 HOH HOH . C 3 HOH A 53 553 35 HOH HOH . C 3 HOH A 54 554 114 HOH HOH . C 3 HOH A 55 555 168 HOH HOH . C 3 HOH A 56 556 16 HOH HOH . C 3 HOH A 57 557 18 HOH HOH . C 3 HOH A 58 558 57 HOH HOH . C 3 HOH A 59 559 110 HOH HOH . C 3 HOH A 60 560 152 HOH HOH . C 3 HOH A 61 561 79 HOH HOH . C 3 HOH A 62 562 19 HOH HOH . C 3 HOH A 63 563 13 HOH HOH . C 3 HOH A 64 564 184 HOH HOH . C 3 HOH A 65 565 15 HOH HOH . C 3 HOH A 66 566 92 HOH HOH . C 3 HOH A 67 567 117 HOH HOH . C 3 HOH A 68 568 213 HOH HOH . C 3 HOH A 69 569 21 HOH HOH . C 3 HOH A 70 570 3 HOH HOH . C 3 HOH A 71 571 122 HOH HOH . C 3 HOH A 72 572 173 HOH HOH . C 3 HOH A 73 573 5 HOH HOH . C 3 HOH A 74 574 238 HOH HOH . C 3 HOH A 75 575 194 HOH HOH . C 3 HOH A 76 576 118 HOH HOH . C 3 HOH A 77 577 256 HOH HOH . C 3 HOH A 78 578 76 HOH HOH . C 3 HOH A 79 579 73 HOH HOH . C 3 HOH A 80 580 197 HOH HOH . C 3 HOH A 81 581 17 HOH HOH . C 3 HOH A 82 582 32 HOH HOH . C 3 HOH A 83 583 174 HOH HOH . C 3 HOH A 84 584 137 HOH HOH . C 3 HOH A 85 585 43 HOH HOH . C 3 HOH A 86 586 33 HOH HOH . C 3 HOH A 87 587 55 HOH HOH . C 3 HOH A 88 588 37 HOH HOH . C 3 HOH A 89 589 68 HOH HOH . C 3 HOH A 90 590 130 HOH HOH . C 3 HOH A 91 591 22 HOH HOH . C 3 HOH A 92 592 14 HOH HOH . C 3 HOH A 93 593 128 HOH HOH . C 3 HOH A 94 594 126 HOH HOH . C 3 HOH A 95 595 142 HOH HOH . C 3 HOH A 96 596 123 HOH HOH . C 3 HOH A 97 597 113 HOH HOH . C 3 HOH A 98 598 61 HOH HOH . C 3 HOH A 99 599 65 HOH HOH . C 3 HOH A 100 600 124 HOH HOH . C 3 HOH A 101 601 6 HOH HOH . C 3 HOH A 102 602 133 HOH HOH . C 3 HOH A 103 603 30 HOH HOH . C 3 HOH A 104 604 120 HOH HOH . C 3 HOH A 105 605 176 HOH HOH . C 3 HOH A 106 606 54 HOH HOH . C 3 HOH A 107 607 11 HOH HOH . C 3 HOH A 108 608 42 HOH HOH . C 3 HOH A 109 609 150 HOH HOH . C 3 HOH A 110 610 38 HOH HOH . C 3 HOH A 111 611 72 HOH HOH . C 3 HOH A 112 612 84 HOH HOH . C 3 HOH A 113 613 23 HOH HOH . C 3 HOH A 114 614 106 HOH HOH . C 3 HOH A 115 615 26 HOH HOH . C 3 HOH A 116 616 155 HOH HOH . C 3 HOH A 117 617 63 HOH HOH . C 3 HOH A 118 618 227 HOH HOH . C 3 HOH A 119 619 52 HOH HOH . C 3 HOH A 120 620 131 HOH HOH . C 3 HOH A 121 621 62 HOH HOH . C 3 HOH A 122 622 188 HOH HOH . C 3 HOH A 123 623 46 HOH HOH . C 3 HOH A 124 624 132 HOH HOH . C 3 HOH A 125 625 111 HOH HOH . C 3 HOH A 126 626 51 HOH HOH . C 3 HOH A 127 627 20 HOH HOH . C 3 HOH A 128 628 202 HOH HOH . C 3 HOH A 129 629 24 HOH HOH . C 3 HOH A 130 630 138 HOH HOH . C 3 HOH A 131 631 169 HOH HOH . C 3 HOH A 132 632 203 HOH HOH . C 3 HOH A 133 633 208 HOH HOH . C 3 HOH A 134 634 146 HOH HOH . C 3 HOH A 135 635 58 HOH HOH . C 3 HOH A 136 636 190 HOH HOH . C 3 HOH A 137 637 83 HOH HOH . C 3 HOH A 138 638 109 HOH HOH . C 3 HOH A 139 639 50 HOH HOH . C 3 HOH A 140 640 89 HOH HOH . C 3 HOH A 141 641 157 HOH HOH . C 3 HOH A 142 642 167 HOH HOH . C 3 HOH A 143 643 166 HOH HOH . C 3 HOH A 144 644 201 HOH HOH . C 3 HOH A 145 645 248 HOH HOH . C 3 HOH A 146 646 48 HOH HOH . C 3 HOH A 147 647 148 HOH HOH . C 3 HOH A 148 648 216 HOH HOH . C 3 HOH A 149 649 154 HOH HOH . C 3 HOH A 150 650 102 HOH HOH . C 3 HOH A 151 651 210 HOH HOH . C 3 HOH A 152 652 175 HOH HOH . C 3 HOH A 153 653 31 HOH HOH . C 3 HOH A 154 654 53 HOH HOH . C 3 HOH A 155 655 2 HOH HOH . C 3 HOH A 156 656 158 HOH HOH . C 3 HOH A 157 657 211 HOH HOH . C 3 HOH A 158 658 119 HOH HOH . C 3 HOH A 159 659 192 HOH HOH . C 3 HOH A 160 660 253 HOH HOH . C 3 HOH A 161 661 103 HOH HOH . C 3 HOH A 162 662 222 HOH HOH . C 3 HOH A 163 663 180 HOH HOH . C 3 HOH A 164 664 239 HOH HOH . C 3 HOH A 165 665 172 HOH HOH . C 3 HOH A 166 666 186 HOH HOH . C 3 HOH A 167 667 104 HOH HOH . C 3 HOH A 168 668 241 HOH HOH . C 3 HOH A 169 669 220 HOH HOH . C 3 HOH A 170 670 141 HOH HOH . C 3 HOH A 171 671 183 HOH HOH . C 3 HOH A 172 672 242 HOH HOH . C 3 HOH A 173 673 66 HOH HOH . C 3 HOH A 174 674 200 HOH HOH . C 3 HOH A 175 675 215 HOH HOH . C 3 HOH A 176 676 199 HOH HOH . C 3 HOH A 177 677 115 HOH HOH . C 3 HOH A 178 678 127 HOH HOH . C 3 HOH A 179 679 212 HOH HOH . C 3 HOH A 180 680 88 HOH HOH . C 3 HOH A 181 681 98 HOH HOH . C 3 HOH A 182 682 134 HOH HOH . C 3 HOH A 183 683 116 HOH HOH . C 3 HOH A 184 684 206 HOH HOH . C 3 HOH A 185 685 182 HOH HOH . C 3 HOH A 186 686 97 HOH HOH . C 3 HOH A 187 687 226 HOH HOH . C 3 HOH A 188 688 64 HOH HOH . C 3 HOH A 189 689 209 HOH HOH . C 3 HOH A 190 690 94 HOH HOH . C 3 HOH A 191 691 252 HOH HOH . C 3 HOH A 192 692 163 HOH HOH . C 3 HOH A 193 693 204 HOH HOH . C 3 HOH A 194 694 234 HOH HOH . C 3 HOH A 195 695 87 HOH HOH . C 3 HOH A 196 696 214 HOH HOH . C 3 HOH A 197 697 187 HOH HOH . C 3 HOH A 198 698 45 HOH HOH . C 3 HOH A 199 699 78 HOH HOH . C 3 HOH A 200 700 125 HOH HOH . C 3 HOH A 201 701 70 HOH HOH . C 3 HOH A 202 702 185 HOH HOH . C 3 HOH A 203 703 80 HOH HOH . C 3 HOH A 204 704 56 HOH HOH . C 3 HOH A 205 705 100 HOH HOH . C 3 HOH A 206 706 249 HOH HOH . C 3 HOH A 207 707 198 HOH HOH . C 3 HOH A 208 708 108 HOH HOH . C 3 HOH A 209 709 170 HOH HOH . C 3 HOH A 210 710 219 HOH HOH . C 3 HOH A 211 711 107 HOH HOH . C 3 HOH A 212 712 160 HOH HOH . C 3 HOH A 213 713 8 HOH HOH . C 3 HOH A 214 714 156 HOH HOH . C 3 HOH A 215 715 171 HOH HOH . C 3 HOH A 216 716 217 HOH HOH . C 3 HOH A 217 717 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Y6A . . . B 2 6.553 1.398 18.606 0.8 24.8 ? C10 Y6A 401 A 1 HETATM 2 N N11 Y6A . . . B 2 7.478 0.866 17.725 0.8 25.01 ? N11 Y6A 401 A 1 HETATM 3 C C15 Y6A . . . B 2 12.866 1.104 22.595 0.8 31.95 ? C15 Y6A 401 A 1 HETATM 4 O O01 Y6A . . . B 2 10.036 1.783 20.697 0.8 23.02 ? O01 Y6A 401 A 1 HETATM 5 C C02 Y6A . . . B 2 9.844 0.802 21.327 0.8 25.1 ? C02 Y6A 401 A 1 HETATM 6 C C03 Y6A . . . B 2 8.852 -0.276 20.83 0.8 23.95 ? C03 Y6A 401 A 1 HETATM 7 N N04 Y6A . . . B 2 8.102 0.288 19.718 0.8 26.85 ? N04 Y6A 401 A 1 HETATM 8 C C05 Y6A . . . B 2 6.954 1.025 19.885 0.8 24.41 ? C05 Y6A 401 A 1 HETATM 9 C C06 Y6A . . . B 2 6.216 1.422 21.03 0.8 28.14 ? C06 Y6A 401 A 1 HETATM 10 C C07 Y6A . . . B 2 5.053 2.191 20.866 0.8 27.23 ? C07 Y6A 401 A 1 HETATM 11 C C08 Y6A . . . B 2 4.635 2.57 19.575 0.8 26.53 ? C08 Y6A 401 A 1 HETATM 12 C C09 Y6A . . . B 2 5.374 2.178 18.445 0.8 29.36 ? C09 Y6A 401 A 1 HETATM 13 N N12 Y6A . . . B 2 8.415 0.192 18.425 0.8 25.2 ? N12 Y6A 401 A 1 HETATM 14 N N13 Y6A . . . B 2 10.549 0.628 22.616 0.8 28.34 ? N13 Y6A 401 A 1 HETATM 15 C C14 Y6A . . . B 2 11.505 1.629 23.077 0.8 27.64 ? C14 Y6A 401 A 1 HETATM 16 C C16 Y6A . . . B 2 13.031 0.052 21.624 0.8 31.3 ? C16 Y6A 401 A 1 HETATM 17 S S17 Y6A . . . B 2 14.605 -0.231 21.355 0.8 44.38 ? S17 Y6A 401 A 1 HETATM 18 C C18 Y6A . . . B 2 15.256 0.854 22.373 0.8 33.92 ? C18 Y6A 401 A 1 HETATM 19 C C19 Y6A . . . B 2 14.235 1.595 23.053 0.8 36.67 ? C19 Y6A 401 A 1 HETATM 20 C C20 Y6A . . . B 2 10.345 -0.583 23.436 0.8 29.63 ? C20 Y6A 401 A 1 HETATM 21 C C21 Y6A . . . B 2 10.876 -1.809 23.027 0.8 27.39 ? C21 Y6A 401 A 1 HETATM 22 C C22 Y6A . . . B 2 10.687 -2.951 23.811 0.8 31.94 ? C22 Y6A 401 A 1 HETATM 23 C C23 Y6A . . . B 2 9.973 -2.846 24.998 0.8 31.16 ? C23 Y6A 401 A 1 HETATM 24 C C24 Y6A . . . B 2 9.767 -4.084 25.888 0.8 38.67 ? C24 Y6A 401 A 1 HETATM 25 C C25 Y6A . . . B 2 8.945 -4.158 26.985 0.8 40.47 ? C25 Y6A 401 A 1 HETATM 26 N N26 Y6A . . . B 2 9.066 -5.371 27.474 0.8 42.48 ? N26 Y6A 401 A 1 HETATM 27 N N27 Y6A . . . B 2 9.954 -6.1 26.726 0.8 38.72 ? N27 Y6A 401 A 1 HETATM 28 C C28 Y6A . . . B 2 10.402 -5.311 25.741 0.8 38.82 ? C28 Y6A 401 A 1 HETATM 29 C C29 Y6A . . . B 2 9.454 -1.618 25.41 0.8 28.71 ? C29 Y6A 401 A 1 HETATM 30 C C30 Y6A . . . B 2 9.636 -0.482 24.627 0.8 30.33 ? C30 Y6A 401 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #