data_7LMF
#
_model_server_result.job_id            3vXM9teuzYIKhLDUApiafQ 
_model_server_result.datetime_utc      '2024-11-21 08:35:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lmf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7LMF 
#
_exptl.entry_id    7LMF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              414.483 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-imidazol-4-yl)phenyl]-~{N}-(thiophen-3-ylmethyl)ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.803 
_cell.angle_gamma         90 
_cell.entry_id            7LMF 
_cell.length_a            44.535 
_cell.length_b            53.697 
_cell.length_c            114.746 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H18 N6 O S' 
_chem_comp.formula_weight    414.483 
_chem_comp.id                Y6G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-imidazol-4-yl)phenyl]-~{N}-(thiophen-3-ylmethyl)ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C08 C07 Y6G doub 376 n y 
C08 C09 Y6G sing 377 n y 
C07 C06 Y6G sing 378 n y 
C06 C05 Y6G doub 379 n y 
C09 C10 Y6G doub 380 n y 
N28 C27 Y6G doub 381 n y 
N28 C24 Y6G sing 382 n y 
C10 C05 Y6G sing 383 n y 
C10 N11 Y6G sing 384 n y 
C05 N04 Y6G sing 385 n y 
C27 N26 Y6G sing 386 n y 
C22 C21 Y6G doub 387 n y 
C22 C23 Y6G sing 388 n y 
C21 C20 Y6G sing 389 n y 
N11 N12 Y6G doub 390 n y 
C24 C23 Y6G sing 391 n n 
C24 C25 Y6G doub 392 n y 
N04 C03 Y6G sing 393 n n 
N04 N12 Y6G sing 394 n y 
N26 C25 Y6G sing 395 n y 
C23 C29 Y6G doub 396 n y 
C03 C02 Y6G sing 397 n n 
C20 N13 Y6G sing 398 n n 
C20 C30 Y6G doub 399 n y 
C02 N13 Y6G sing 400 n n 
C02 O01 Y6G doub 401 n n 
N13 C14 Y6G sing 402 n n 
C29 C30 Y6G sing 403 n y 
C14 C15 Y6G sing 404 n n 
C15 C19 Y6G sing 405 n y 
C15 C16 Y6G doub 406 n y 
C19 C18 Y6G doub 407 n y 
C16 S17 Y6G sing 408 n y 
C18 S17 Y6G sing 409 n y 
C03 H1 Y6G sing 410 n n 
C03 H2 Y6G sing 411 n n 
C06 H3 Y6G sing 412 n n 
C07 H4 Y6G sing 413 n n 
C08 H5 Y6G sing 414 n n 
C09 H6 Y6G sing 415 n n 
C14 H7 Y6G sing 416 n n 
C14 H8 Y6G sing 417 n n 
C16 H9 Y6G sing 418 n n 
C18 H10 Y6G sing 419 n n 
C19 H11 Y6G sing 420 n n 
C21 H12 Y6G sing 421 n n 
C22 H13 Y6G sing 422 n n 
C25 H14 Y6G sing 423 n n 
N26 H15 Y6G sing 424 n n 
C27 H16 Y6G sing 425 n n 
C29 H18 Y6G sing 426 n n 
C30 H19 Y6G sing 427 n n 
#
_atom_sites.entry_id                     7LMF 
_atom_sites.fract_transf_matrix[1][1]    0.022454 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004285 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018623 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y6G A 1 401 307 Y6G 299 . 
D 2 Y6G B 1 401 307 Y6G 299 . 
E 3 HOH A 1 501 183 HOH HOH . 
E 3 HOH A 2 502 73 HOH HOH . 
E 3 HOH A 3 503 50 HOH HOH . 
E 3 HOH A 4 504 170 HOH HOH . 
E 3 HOH A 5 505 48 HOH HOH . 
E 3 HOH A 6 506 21 HOH HOH . 
E 3 HOH A 7 507 117 HOH HOH . 
E 3 HOH A 8 508 98 HOH HOH . 
E 3 HOH A 9 509 58 HOH HOH . 
E 3 HOH A 10 510 64 HOH HOH . 
E 3 HOH A 11 511 47 HOH HOH . 
E 3 HOH A 12 512 139 HOH HOH . 
E 3 HOH A 13 513 157 HOH HOH . 
E 3 HOH A 14 514 91 HOH HOH . 
E 3 HOH A 15 515 12 HOH HOH . 
E 3 HOH A 16 516 39 HOH HOH . 
E 3 HOH A 17 517 38 HOH HOH . 
E 3 HOH A 18 518 16 HOH HOH . 
E 3 HOH A 19 519 31 HOH HOH . 
E 3 HOH A 20 520 35 HOH HOH . 
E 3 HOH A 21 521 176 HOH HOH . 
E 3 HOH A 22 522 115 HOH HOH . 
E 3 HOH A 23 523 69 HOH HOH . 
E 3 HOH A 24 524 2 HOH HOH . 
E 3 HOH A 25 525 158 HOH HOH . 
E 3 HOH A 26 526 7 HOH HOH . 
E 3 HOH A 27 527 13 HOH HOH . 
E 3 HOH A 28 528 127 HOH HOH . 
E 3 HOH A 29 529 184 HOH HOH . 
E 3 HOH A 30 530 95 HOH HOH . 
E 3 HOH A 31 531 42 HOH HOH . 
E 3 HOH A 32 532 1 HOH HOH . 
E 3 HOH A 33 533 129 HOH HOH . 
E 3 HOH A 34 534 133 HOH HOH . 
E 3 HOH A 35 535 61 HOH HOH . 
E 3 HOH A 36 536 54 HOH HOH . 
E 3 HOH A 37 537 46 HOH HOH . 
E 3 HOH A 38 538 122 HOH HOH . 
E 3 HOH A 39 539 32 HOH HOH . 
E 3 HOH A 40 540 53 HOH HOH . 
E 3 HOH A 41 541 72 HOH HOH . 
E 3 HOH A 42 542 83 HOH HOH . 
E 3 HOH A 43 543 182 HOH HOH . 
E 3 HOH A 44 544 75 HOH HOH . 
E 3 HOH A 45 545 67 HOH HOH . 
E 3 HOH A 46 546 173 HOH HOH . 
E 3 HOH A 47 547 161 HOH HOH . 
E 3 HOH A 48 548 164 HOH HOH . 
E 3 HOH A 49 549 140 HOH HOH . 
E 3 HOH A 50 550 172 HOH HOH . 
E 3 HOH A 51 551 134 HOH HOH . 
E 3 HOH A 52 552 44 HOH HOH . 
E 3 HOH A 53 553 136 HOH HOH . 
E 3 HOH A 54 554 153 HOH HOH . 
F 3 HOH B 1 501 23 HOH HOH . 
F 3 HOH B 2 502 78 HOH HOH . 
F 3 HOH B 3 503 65 HOH HOH . 
F 3 HOH B 4 504 17 HOH HOH . 
F 3 HOH B 5 505 52 HOH HOH . 
F 3 HOH B 6 506 45 HOH HOH . 
F 3 HOH B 7 507 60 HOH HOH . 
F 3 HOH B 8 508 27 HOH HOH . 
F 3 HOH B 9 509 41 HOH HOH . 
F 3 HOH B 10 510 33 HOH HOH . 
F 3 HOH B 11 511 43 HOH HOH . 
F 3 HOH B 12 512 155 HOH HOH . 
F 3 HOH B 13 513 70 HOH HOH . 
F 3 HOH B 14 514 6 HOH HOH . 
F 3 HOH B 15 515 168 HOH HOH . 
F 3 HOH B 16 516 90 HOH HOH . 
F 3 HOH B 17 517 142 HOH HOH . 
F 3 HOH B 18 518 152 HOH HOH . 
F 3 HOH B 19 519 26 HOH HOH . 
F 3 HOH B 20 520 11 HOH HOH . 
F 3 HOH B 21 521 79 HOH HOH . 
F 3 HOH B 22 522 169 HOH HOH . 
F 3 HOH B 23 523 10 HOH HOH . 
F 3 HOH B 24 524 68 HOH HOH . 
F 3 HOH B 25 525 19 HOH HOH . 
F 3 HOH B 26 526 30 HOH HOH . 
F 3 HOH B 27 527 49 HOH HOH . 
F 3 HOH B 28 528 62 HOH HOH . 
F 3 HOH B 29 529 29 HOH HOH . 
F 3 HOH B 30 530 4 HOH HOH . 
F 3 HOH B 31 531 25 HOH HOH . 
F 3 HOH B 32 532 143 HOH HOH . 
F 3 HOH B 33 533 37 HOH HOH . 
F 3 HOH B 34 534 74 HOH HOH . 
F 3 HOH B 35 535 51 HOH HOH . 
F 3 HOH B 36 536 5 HOH HOH . 
F 3 HOH B 37 537 22 HOH HOH . 
F 3 HOH B 38 538 9 HOH HOH . 
F 3 HOH B 39 539 18 HOH HOH . 
F 3 HOH B 40 540 40 HOH HOH . 
F 3 HOH B 41 541 81 HOH HOH . 
F 3 HOH B 42 542 130 HOH HOH . 
F 3 HOH B 43 543 59 HOH HOH . 
F 3 HOH B 44 544 167 HOH HOH . 
F 3 HOH B 45 545 120 HOH HOH . 
F 3 HOH B 46 546 3 HOH HOH . 
F 3 HOH B 47 547 149 HOH HOH . 
F 3 HOH B 48 548 160 HOH HOH . 
F 3 HOH B 49 549 8 HOH HOH . 
F 3 HOH B 50 550 177 HOH HOH . 
F 3 HOH B 51 551 124 HOH HOH . 
F 3 HOH B 52 552 24 HOH HOH . 
F 3 HOH B 53 553 94 HOH HOH . 
F 3 HOH B 54 554 135 HOH HOH . 
F 3 HOH B 55 555 146 HOH HOH . 
F 3 HOH B 56 556 179 HOH HOH . 
F 3 HOH B 57 557 180 HOH HOH . 
F 3 HOH B 58 558 150 HOH HOH . 
F 3 HOH B 59 559 66 HOH HOH . 
F 3 HOH B 60 560 118 HOH HOH . 
F 3 HOH B 61 561 131 HOH HOH . 
F 3 HOH B 62 562 132 HOH HOH . 
F 3 HOH B 63 563 113 HOH HOH . 
F 3 HOH B 64 564 144 HOH HOH . 
F 3 HOH B 65 565 151 HOH HOH . 
F 3 HOH B 66 566 104 HOH HOH . 
F 3 HOH B 67 567 56 HOH HOH . 
F 3 HOH B 68 568 28 HOH HOH . 
F 3 HOH B 69 569 15 HOH HOH . 
F 3 HOH B 70 570 141 HOH HOH . 
F 3 HOH B 71 571 55 HOH HOH . 
F 3 HOH B 72 572 80 HOH HOH . 
F 3 HOH B 73 573 82 HOH HOH . 
F 3 HOH B 74 574 178 HOH HOH . 
F 3 HOH B 75 575 34 HOH HOH . 
F 3 HOH B 76 576 71 HOH HOH . 
F 3 HOH B 77 577 166 HOH HOH . 
F 3 HOH B 78 578 119 HOH HOH . 
F 3 HOH B 79 579 181 HOH HOH . 
F 3 HOH B 80 580 84 HOH HOH . 
F 3 HOH B 81 581 92 HOH HOH . 
F 3 HOH B 82 582 85 HOH HOH . 
F 3 HOH B 83 583 123 HOH HOH . 
F 3 HOH B 84 584 63 HOH HOH . 
F 3 HOH B 85 585 159 HOH HOH . 
F 3 HOH B 86 586 171 HOH HOH . 
F 3 HOH B 87 587 138 HOH HOH . 
F 3 HOH B 88 588 14 HOH HOH . 
F 3 HOH B 89 589 20 HOH HOH . 
F 3 HOH B 90 590 76 HOH HOH . 
F 3 HOH B 91 591 148 HOH HOH . 
F 3 HOH B 92 592 165 HOH HOH . 
F 3 HOH B 93 593 145 HOH HOH . 
F 3 HOH B 94 594 175 HOH HOH . 
F 3 HOH B 95 595 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 Y6G . . . D 2 -23.964 -2.834 15.015 1 37.31 ? O01 Y6G 401 B 1 
HETATM 2 C C02 Y6G . . . D 2 -24.503 -1.775 15.011 1 38.08 ? C02 Y6G 401 B 1 
HETATM 3 C C03 Y6G . . . D 2 -23.914 -0.595 15.8 1 31.57 ? C03 Y6G 401 B 1 
HETATM 4 N N04 Y6G . . . D 2 -23.034 -1.115 16.829 1 29.44 ? N04 Y6G 401 B 1 
HETATM 5 C C05 Y6G . . . D 2 -23.416 -1.803 17.951 1 32.74 ? C05 Y6G 401 B 1 
HETATM 6 C C06 Y6G . . . D 2 -24.663 -2.202 18.486 1 34.02 ? C06 Y6G 401 B 1 
HETATM 7 C C07 Y6G . . . D 2 -24.719 -2.909 19.691 1 33.34 ? C07 Y6G 401 B 1 
HETATM 8 C C08 Y6G . . . D 2 -23.534 -3.225 20.378 1 34.01 ? C08 Y6G 401 B 1 
HETATM 9 C C09 Y6G . . . D 2 -22.297 -2.835 19.851 1 33.62 ? C09 Y6G 401 B 1 
HETATM 10 C C10 Y6G . . . D 2 -22.24 -2.121 18.631 1 31.38 ? C10 Y6G 401 B 1 
HETATM 11 N N11 Y6G . . . D 2 -21.197 -1.624 17.886 1 29.04 ? N11 Y6G 401 B 1 
HETATM 12 N N12 Y6G . . . D 2 -21.7 -1.026 16.802 1 31.16 ? N12 Y6G 401 B 1 
HETATM 13 N N13 Y6G . . . D 2 -25.731 -1.648 14.242 1 43.74 ? N13 Y6G 401 B 1 
HETATM 14 C C14 Y6G . . . D 2 -26.235 -2.811 13.527 1 42.99 ? C14 Y6G 401 B 1 
HETATM 15 C C15 Y6G . . . D 2 -25.609 -2.775 12.143 1 42.66 ? C15 Y6G 401 B 1 
HETATM 16 C C16 Y6G . . . D 2 -24.929 -3.866 11.512 1 45.15 ? C16 Y6G 401 B 1 
HETATM 17 S S17 Y6G . . . D 2 -24.409 -3.377 10.055 1 57.86 ? S17 Y6G 401 B 1 
HETATM 18 C C18 Y6G . . . D 2 -24.915 -1.846 10.011 1 39.2 ? C18 Y6G 401 B 1 
HETATM 19 C C19 Y6G . . . D 2 -25.598 -1.554 11.235 1 43.11 ? C19 Y6G 401 B 1 
HETATM 20 C C20 Y6G . . . D 2 -26.449 -0.393 14.169 1 38.86 ? C20 Y6G 401 B 1 
HETATM 21 C C21 Y6G . . . D 2 -27.65 -0.241 14.836 1 39.1 ? C21 Y6G 401 B 1 
HETATM 22 C C22 Y6G . . . D 2 -28.322 0.965 14.749 1 41.54 ? C22 Y6G 401 B 1 
HETATM 23 C C23 Y6G . . . D 2 -27.789 2 13.992 1 41 ? C23 Y6G 401 B 1 
HETATM 24 C C24 Y6G . . . D 2 -28.51 3.336 13.894 1 40.61 ? C24 Y6G 401 B 1 
HETATM 25 C C25 Y6G . . . D 2 -28.316 4.282 12.927 1 39.98 ? C25 Y6G 401 B 1 
HETATM 26 N N26 Y6G . . . D 2 -29.11 5.287 13.206 1 44.94 ? N26 Y6G 401 B 1 
HETATM 27 C C27 Y6G . . . D 2 -29.803 5.002 14.321 1 41.5 ? C27 Y6G 401 B 1 
HETATM 28 N N28 Y6G . . . D 2 -29.416 3.783 14.742 1 43.78 ? N28 Y6G 401 B 1 
HETATM 29 C C29 Y6G . . . D 2 -26.59 1.844 13.324 1 33.18 ? C29 Y6G 401 B 1 
HETATM 30 C C30 Y6G . . . D 2 -25.924 0.641 13.416 1 37.75 ? C30 Y6G 401 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           30 
#