data_7LMH # _model_server_result.job_id BdemSuIj57CXl8HkZAFjkg _model_server_result.datetime_utc '2024-11-21 08:59:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7LMH # _exptl.entry_id 7LMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.228 _cell.angle_gamma 90 _cell.entry_id 7LMH _cell.length_a 107.685 _cell.length_b 82.471 _cell.length_c 53.297 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7LMH _atom_sites.fract_transf_matrix[1][1] 0.009286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002528 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y6D AAA 1 401 401 Y6D 910 . C 3 GOL AAA 1 402 501 GOL GOL . D 3 GOL AAA 1 403 601 GOL GOL . E 4 HOH AAA 1 501 156 HOH HOH . E 4 HOH AAA 2 502 204 HOH HOH . E 4 HOH AAA 3 503 107 HOH HOH . E 4 HOH AAA 4 504 87 HOH HOH . E 4 HOH AAA 5 505 54 HOH HOH . E 4 HOH AAA 6 506 216 HOH HOH . E 4 HOH AAA 7 507 227 HOH HOH . E 4 HOH AAA 8 508 226 HOH HOH . E 4 HOH AAA 9 509 76 HOH HOH . E 4 HOH AAA 10 510 78 HOH HOH . E 4 HOH AAA 11 511 109 HOH HOH . E 4 HOH AAA 12 512 176 HOH HOH . E 4 HOH AAA 13 513 57 HOH HOH . E 4 HOH AAA 14 514 29 HOH HOH . E 4 HOH AAA 15 515 13 HOH HOH . E 4 HOH AAA 16 516 131 HOH HOH . E 4 HOH AAA 17 517 178 HOH HOH . E 4 HOH AAA 18 518 82 HOH HOH . E 4 HOH AAA 19 519 168 HOH HOH . E 4 HOH AAA 20 520 193 HOH HOH . E 4 HOH AAA 21 521 94 HOH HOH . E 4 HOH AAA 22 522 184 HOH HOH . E 4 HOH AAA 23 523 132 HOH HOH . E 4 HOH AAA 24 524 173 HOH HOH . E 4 HOH AAA 25 525 203 HOH HOH . E 4 HOH AAA 26 526 79 HOH HOH . E 4 HOH AAA 27 527 194 HOH HOH . E 4 HOH AAA 28 528 122 HOH HOH . E 4 HOH AAA 29 529 104 HOH HOH . E 4 HOH AAA 30 530 117 HOH HOH . E 4 HOH AAA 31 531 162 HOH HOH . E 4 HOH AAA 32 532 24 HOH HOH . E 4 HOH AAA 33 533 63 HOH HOH . E 4 HOH AAA 34 534 181 HOH HOH . E 4 HOH AAA 35 535 152 HOH HOH . E 4 HOH AAA 36 536 36 HOH HOH . E 4 HOH AAA 37 537 130 HOH HOH . E 4 HOH AAA 38 538 96 HOH HOH . E 4 HOH AAA 39 539 34 HOH HOH . E 4 HOH AAA 40 540 121 HOH HOH . E 4 HOH AAA 41 541 233 HOH HOH . E 4 HOH AAA 42 542 212 HOH HOH . E 4 HOH AAA 43 543 95 HOH HOH . E 4 HOH AAA 44 544 84 HOH HOH . E 4 HOH AAA 45 545 46 HOH HOH . E 4 HOH AAA 46 546 108 HOH HOH . E 4 HOH AAA 47 547 16 HOH HOH . E 4 HOH AAA 48 548 38 HOH HOH . E 4 HOH AAA 49 549 150 HOH HOH . E 4 HOH AAA 50 550 65 HOH HOH . E 4 HOH AAA 51 551 153 HOH HOH . E 4 HOH AAA 52 552 195 HOH HOH . E 4 HOH AAA 53 553 238 HOH HOH . E 4 HOH AAA 54 554 177 HOH HOH . E 4 HOH AAA 55 555 64 HOH HOH . E 4 HOH AAA 56 556 137 HOH HOH . E 4 HOH AAA 57 557 30 HOH HOH . E 4 HOH AAA 58 558 58 HOH HOH . E 4 HOH AAA 59 559 6 HOH HOH . E 4 HOH AAA 60 560 41 HOH HOH . E 4 HOH AAA 61 561 170 HOH HOH . E 4 HOH AAA 62 562 136 HOH HOH . E 4 HOH AAA 63 563 49 HOH HOH . E 4 HOH AAA 64 564 197 HOH HOH . E 4 HOH AAA 65 565 174 HOH HOH . E 4 HOH AAA 66 566 125 HOH HOH . E 4 HOH AAA 67 567 182 HOH HOH . E 4 HOH AAA 68 568 62 HOH HOH . E 4 HOH AAA 69 569 66 HOH HOH . E 4 HOH AAA 70 570 51 HOH HOH . E 4 HOH AAA 71 571 201 HOH HOH . E 4 HOH AAA 72 572 40 HOH HOH . E 4 HOH AAA 73 573 72 HOH HOH . E 4 HOH AAA 74 574 47 HOH HOH . E 4 HOH AAA 75 575 32 HOH HOH . E 4 HOH AAA 76 576 218 HOH HOH . E 4 HOH AAA 77 577 93 HOH HOH . E 4 HOH AAA 78 578 111 HOH HOH . E 4 HOH AAA 79 579 154 HOH HOH . E 4 HOH AAA 80 580 27 HOH HOH . E 4 HOH AAA 81 581 129 HOH HOH . E 4 HOH AAA 82 582 202 HOH HOH . E 4 HOH AAA 83 583 90 HOH HOH . E 4 HOH AAA 84 584 198 HOH HOH . E 4 HOH AAA 85 585 114 HOH HOH . E 4 HOH AAA 86 586 139 HOH HOH . E 4 HOH AAA 87 587 236 HOH HOH . E 4 HOH AAA 88 588 86 HOH HOH . E 4 HOH AAA 89 589 175 HOH HOH . E 4 HOH AAA 90 590 200 HOH HOH . E 4 HOH AAA 91 591 88 HOH HOH . E 4 HOH AAA 92 592 165 HOH HOH . E 4 HOH AAA 93 593 19 HOH HOH . E 4 HOH AAA 94 594 39 HOH HOH . E 4 HOH AAA 95 595 105 HOH HOH . E 4 HOH AAA 96 596 74 HOH HOH . E 4 HOH AAA 97 597 2 HOH HOH . E 4 HOH AAA 98 598 155 HOH HOH . E 4 HOH AAA 99 599 91 HOH HOH . E 4 HOH AAA 100 600 237 HOH HOH . E 4 HOH AAA 101 601 209 HOH HOH . E 4 HOH AAA 102 602 23 HOH HOH . E 4 HOH AAA 103 603 106 HOH HOH . E 4 HOH AAA 104 604 213 HOH HOH . E 4 HOH AAA 105 605 61 HOH HOH . E 4 HOH AAA 106 606 166 HOH HOH . E 4 HOH AAA 107 607 219 HOH HOH . E 4 HOH AAA 108 608 127 HOH HOH . E 4 HOH AAA 109 609 77 HOH HOH . E 4 HOH AAA 110 610 33 HOH HOH . E 4 HOH AAA 111 611 81 HOH HOH . E 4 HOH AAA 112 612 141 HOH HOH . E 4 HOH AAA 113 613 167 HOH HOH . E 4 HOH AAA 114 614 21 HOH HOH . E 4 HOH AAA 115 615 103 HOH HOH . E 4 HOH AAA 116 616 1 HOH HOH . E 4 HOH AAA 117 617 151 HOH HOH . E 4 HOH AAA 118 618 31 HOH HOH . E 4 HOH AAA 119 619 75 HOH HOH . E 4 HOH AAA 120 620 25 HOH HOH . E 4 HOH AAA 121 621 68 HOH HOH . E 4 HOH AAA 122 622 56 HOH HOH . E 4 HOH AAA 123 623 210 HOH HOH . E 4 HOH AAA 124 624 143 HOH HOH . E 4 HOH AAA 125 625 48 HOH HOH . E 4 HOH AAA 126 626 110 HOH HOH . E 4 HOH AAA 127 627 3 HOH HOH . E 4 HOH AAA 128 628 5 HOH HOH . E 4 HOH AAA 129 629 123 HOH HOH . E 4 HOH AAA 130 630 191 HOH HOH . E 4 HOH AAA 131 631 232 HOH HOH . E 4 HOH AAA 132 632 92 HOH HOH . E 4 HOH AAA 133 633 163 HOH HOH . E 4 HOH AAA 134 634 149 HOH HOH . E 4 HOH AAA 135 635 22 HOH HOH . E 4 HOH AAA 136 636 14 HOH HOH . E 4 HOH AAA 137 637 147 HOH HOH . E 4 HOH AAA 138 638 42 HOH HOH . E 4 HOH AAA 139 639 113 HOH HOH . E 4 HOH AAA 140 640 44 HOH HOH . E 4 HOH AAA 141 641 266 HOH HOH . E 4 HOH AAA 142 642 142 HOH HOH . E 4 HOH AAA 143 643 273 HOH HOH . E 4 HOH AAA 144 644 60 HOH HOH . E 4 HOH AAA 145 645 9 HOH HOH . E 4 HOH AAA 146 646 37 HOH HOH . E 4 HOH AAA 147 647 157 HOH HOH . E 4 HOH AAA 148 648 187 HOH HOH . E 4 HOH AAA 149 649 169 HOH HOH . E 4 HOH AAA 150 650 116 HOH HOH . E 4 HOH AAA 151 651 83 HOH HOH . E 4 HOH AAA 152 652 199 HOH HOH . E 4 HOH AAA 153 653 101 HOH HOH . E 4 HOH AAA 154 654 73 HOH HOH . E 4 HOH AAA 155 655 119 HOH HOH . E 4 HOH AAA 156 656 71 HOH HOH . E 4 HOH AAA 157 657 28 HOH HOH . E 4 HOH AAA 158 658 11 HOH HOH . E 4 HOH AAA 159 659 188 HOH HOH . E 4 HOH AAA 160 660 17 HOH HOH . E 4 HOH AAA 161 661 118 HOH HOH . E 4 HOH AAA 162 662 138 HOH HOH . E 4 HOH AAA 163 663 274 HOH HOH . E 4 HOH AAA 164 664 15 HOH HOH . E 4 HOH AAA 165 665 59 HOH HOH . E 4 HOH AAA 166 666 164 HOH HOH . E 4 HOH AAA 167 667 207 HOH HOH . E 4 HOH AAA 168 668 214 HOH HOH . E 4 HOH AAA 169 669 12 HOH HOH . E 4 HOH AAA 170 670 183 HOH HOH . E 4 HOH AAA 171 671 67 HOH HOH . E 4 HOH AAA 172 672 102 HOH HOH . E 4 HOH AAA 173 673 50 HOH HOH . E 4 HOH AAA 174 674 10 HOH HOH . E 4 HOH AAA 175 675 89 HOH HOH . E 4 HOH AAA 176 676 148 HOH HOH . E 4 HOH AAA 177 677 4 HOH HOH . E 4 HOH AAA 178 678 206 HOH HOH . E 4 HOH AAA 179 679 185 HOH HOH . E 4 HOH AAA 180 680 7 HOH HOH . E 4 HOH AAA 181 681 35 HOH HOH . E 4 HOH AAA 182 682 224 HOH HOH . E 4 HOH AAA 183 683 45 HOH HOH . E 4 HOH AAA 184 684 18 HOH HOH . E 4 HOH AAA 185 685 70 HOH HOH . E 4 HOH AAA 186 686 208 HOH HOH . E 4 HOH AAA 187 687 171 HOH HOH . E 4 HOH AAA 188 688 217 HOH HOH . E 4 HOH AAA 189 689 26 HOH HOH . E 4 HOH AAA 190 690 100 HOH HOH . E 4 HOH AAA 191 691 20 HOH HOH . E 4 HOH AAA 192 692 8 HOH HOH . E 4 HOH AAA 193 693 229 HOH HOH . E 4 HOH AAA 194 694 80 HOH HOH . E 4 HOH AAA 195 695 43 HOH HOH . E 4 HOH AAA 196 696 205 HOH HOH . E 4 HOH AAA 197 697 124 HOH HOH . E 4 HOH AAA 198 698 161 HOH HOH . E 4 HOH AAA 199 699 160 HOH HOH . E 4 HOH AAA 200 700 192 HOH HOH . E 4 HOH AAA 201 701 250 HOH HOH . E 4 HOH AAA 202 702 242 HOH HOH . E 4 HOH AAA 203 703 260 HOH HOH . E 4 HOH AAA 204 704 222 HOH HOH . E 4 HOH AAA 205 705 234 HOH HOH . E 4 HOH AAA 206 706 69 HOH HOH . E 4 HOH AAA 207 707 225 HOH HOH . E 4 HOH AAA 208 708 135 HOH HOH . E 4 HOH AAA 209 709 99 HOH HOH . E 4 HOH AAA 210 710 259 HOH HOH . E 4 HOH AAA 211 711 253 HOH HOH . E 4 HOH AAA 212 712 272 HOH HOH . E 4 HOH AAA 213 713 85 HOH HOH . E 4 HOH AAA 214 714 112 HOH HOH . E 4 HOH AAA 215 715 261 HOH HOH . E 4 HOH AAA 216 716 128 HOH HOH . E 4 HOH AAA 217 717 228 HOH HOH . E 4 HOH AAA 218 718 241 HOH HOH . E 4 HOH AAA 219 719 271 HOH HOH . E 4 HOH AAA 220 720 144 HOH HOH . E 4 HOH AAA 221 721 220 HOH HOH . E 4 HOH AAA 222 722 258 HOH HOH . E 4 HOH AAA 223 723 52 HOH HOH . E 4 HOH AAA 224 724 255 HOH HOH . E 4 HOH AAA 225 725 53 HOH HOH . E 4 HOH AAA 226 726 180 HOH HOH . E 4 HOH AAA 227 727 159 HOH HOH . E 4 HOH AAA 228 728 215 HOH HOH . E 4 HOH AAA 229 729 257 HOH HOH . E 4 HOH AAA 230 730 98 HOH HOH . E 4 HOH AAA 231 731 186 HOH HOH . E 4 HOH AAA 232 732 239 HOH HOH . E 4 HOH AAA 233 733 248 HOH HOH . E 4 HOH AAA 234 734 262 HOH HOH . E 4 HOH AAA 235 735 145 HOH HOH . E 4 HOH AAA 236 736 240 HOH HOH . E 4 HOH AAA 237 737 243 HOH HOH . E 4 HOH AAA 238 738 115 HOH HOH . E 4 HOH AAA 239 739 190 HOH HOH . E 4 HOH AAA 240 740 264 HOH HOH . E 4 HOH AAA 241 741 252 HOH HOH . E 4 HOH AAA 242 742 267 HOH HOH . E 4 HOH AAA 243 743 211 HOH HOH . E 4 HOH AAA 244 744 254 HOH HOH . E 4 HOH AAA 245 745 265 HOH HOH . E 4 HOH AAA 246 746 270 HOH HOH . E 4 HOH AAA 247 747 97 HOH HOH . E 4 HOH AAA 248 748 55 HOH HOH . E 4 HOH AAA 249 749 133 HOH HOH . E 4 HOH AAA 250 750 235 HOH HOH . E 4 HOH AAA 251 751 231 HOH HOH . E 4 HOH AAA 252 752 172 HOH HOH . E 4 HOH AAA 253 753 179 HOH HOH . E 4 HOH AAA 254 754 246 HOH HOH . E 4 HOH AAA 255 755 251 HOH HOH . E 4 HOH AAA 256 756 244 HOH HOH . E 4 HOH AAA 257 757 146 HOH HOH . E 4 HOH AAA 258 758 269 HOH HOH . E 4 HOH AAA 259 759 247 HOH HOH . E 4 HOH AAA 260 760 263 HOH HOH . E 4 HOH AAA 261 761 221 HOH HOH . E 4 HOH AAA 262 762 268 HOH HOH . E 4 HOH AAA 263 763 223 HOH HOH . E 4 HOH AAA 264 764 120 HOH HOH . E 4 HOH AAA 265 765 126 HOH HOH . E 4 HOH AAA 266 766 249 HOH HOH . E 4 HOH AAA 267 767 256 HOH HOH . E 4 HOH AAA 268 768 158 HOH HOH . E 4 HOH AAA 269 769 134 HOH HOH . E 4 HOH AAA 270 770 245 HOH HOH . E 4 HOH AAA 271 771 196 HOH HOH . E 4 HOH AAA 272 772 230 HOH HOH . E 4 HOH AAA 273 773 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -11.609 -39.568 19.991 1 47.9 0 C1 GOL 403 AAA 1 HETATM 2 O O1 GOL . . . D 3 -10.547 -39.042 19.203 1 38.36 0 O1 GOL 403 AAA 1 HETATM 3 C C2 GOL . . . D 3 -11.739 -38.856 21.322 1 59.26 0 C2 GOL 403 AAA 1 HETATM 4 O O2 GOL . . . D 3 -12.002 -37.471 21.116 1 61.85 0 O2 GOL 403 AAA 1 HETATM 5 C C3 GOL . . . D 3 -12.82 -39.459 22.191 1 58.1 0 C3 GOL 403 AAA 1 HETATM 6 O O3 GOL . . . D 3 -12.423 -40.76 22.602 1 66.1 0 O3 GOL 403 AAA 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #