data_7LMI
#
_model_server_result.job_id            8pNoqBdpQsayjbBDWjWcSA 
_model_server_result.datetime_utc      '2024-11-14 23:00:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lmi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7LMI 
#
_exptl.entry_id    7LMI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.657 
_cell.angle_gamma         90 
_cell.entry_id            7LMI 
_cell.length_a            108.508 
_cell.length_b            82.109 
_cell.length_c            53.384 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LMI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7LMI 
_atom_sites.fract_transf_matrix[1][1]    0.009216 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00241 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL AAA 1 401 401 GOL GOL . 
C 3 Y6A AAA 1 402 501 Y6A 979 . 
D 2 GOL AAA 1 403 601 GOL GOL . 
E 4 HOH AAA 1 501 216 HOH HOH . 
E 4 HOH AAA 2 502 214 HOH HOH . 
E 4 HOH AAA 3 503 42 HOH HOH . 
E 4 HOH AAA 4 504 180 HOH HOH . 
E 4 HOH AAA 5 505 88 HOH HOH . 
E 4 HOH AAA 6 506 77 HOH HOH . 
E 4 HOH AAA 7 507 66 HOH HOH . 
E 4 HOH AAA 8 508 161 HOH HOH . 
E 4 HOH AAA 9 509 168 HOH HOH . 
E 4 HOH AAA 10 510 213 HOH HOH . 
E 4 HOH AAA 11 511 18 HOH HOH . 
E 4 HOH AAA 12 512 69 HOH HOH . 
E 4 HOH AAA 13 513 86 HOH HOH . 
E 4 HOH AAA 14 514 176 HOH HOH . 
E 4 HOH AAA 15 515 156 HOH HOH . 
E 4 HOH AAA 16 516 96 HOH HOH . 
E 4 HOH AAA 17 517 39 HOH HOH . 
E 4 HOH AAA 18 518 118 HOH HOH . 
E 4 HOH AAA 19 519 136 HOH HOH . 
E 4 HOH AAA 20 520 117 HOH HOH . 
E 4 HOH AAA 21 521 130 HOH HOH . 
E 4 HOH AAA 22 522 51 HOH HOH . 
E 4 HOH AAA 23 523 98 HOH HOH . 
E 4 HOH AAA 24 524 82 HOH HOH . 
E 4 HOH AAA 25 525 122 HOH HOH . 
E 4 HOH AAA 26 526 21 HOH HOH . 
E 4 HOH AAA 27 527 104 HOH HOH . 
E 4 HOH AAA 28 528 43 HOH HOH . 
E 4 HOH AAA 29 529 147 HOH HOH . 
E 4 HOH AAA 30 530 95 HOH HOH . 
E 4 HOH AAA 31 531 101 HOH HOH . 
E 4 HOH AAA 32 532 108 HOH HOH . 
E 4 HOH AAA 33 533 46 HOH HOH . 
E 4 HOH AAA 34 534 153 HOH HOH . 
E 4 HOH AAA 35 535 84 HOH HOH . 
E 4 HOH AAA 36 536 89 HOH HOH . 
E 4 HOH AAA 37 537 126 HOH HOH . 
E 4 HOH AAA 38 538 74 HOH HOH . 
E 4 HOH AAA 39 539 33 HOH HOH . 
E 4 HOH AAA 40 540 151 HOH HOH . 
E 4 HOH AAA 41 541 215 HOH HOH . 
E 4 HOH AAA 42 542 23 HOH HOH . 
E 4 HOH AAA 43 543 53 HOH HOH . 
E 4 HOH AAA 44 544 83 HOH HOH . 
E 4 HOH AAA 45 545 135 HOH HOH . 
E 4 HOH AAA 46 546 103 HOH HOH . 
E 4 HOH AAA 47 547 157 HOH HOH . 
E 4 HOH AAA 48 548 60 HOH HOH . 
E 4 HOH AAA 49 549 29 HOH HOH . 
E 4 HOH AAA 50 550 40 HOH HOH . 
E 4 HOH AAA 51 551 11 HOH HOH . 
E 4 HOH AAA 52 552 99 HOH HOH . 
E 4 HOH AAA 53 553 145 HOH HOH . 
E 4 HOH AAA 54 554 20 HOH HOH . 
E 4 HOH AAA 55 555 5 HOH HOH . 
E 4 HOH AAA 56 556 124 HOH HOH . 
E 4 HOH AAA 57 557 9 HOH HOH . 
E 4 HOH AAA 58 558 34 HOH HOH . 
E 4 HOH AAA 59 559 116 HOH HOH . 
E 4 HOH AAA 60 560 1 HOH HOH . 
E 4 HOH AAA 61 561 114 HOH HOH . 
E 4 HOH AAA 62 562 10 HOH HOH . 
E 4 HOH AAA 63 563 17 HOH HOH . 
E 4 HOH AAA 64 564 19 HOH HOH . 
E 4 HOH AAA 65 565 183 HOH HOH . 
E 4 HOH AAA 66 566 172 HOH HOH . 
E 4 HOH AAA 67 567 25 HOH HOH . 
E 4 HOH AAA 68 568 28 HOH HOH . 
E 4 HOH AAA 69 569 8 HOH HOH . 
E 4 HOH AAA 70 570 48 HOH HOH . 
E 4 HOH AAA 71 571 164 HOH HOH . 
E 4 HOH AAA 72 572 57 HOH HOH . 
E 4 HOH AAA 73 573 146 HOH HOH . 
E 4 HOH AAA 74 574 52 HOH HOH . 
E 4 HOH AAA 75 575 62 HOH HOH . 
E 4 HOH AAA 76 576 217 HOH HOH . 
E 4 HOH AAA 77 577 166 HOH HOH . 
E 4 HOH AAA 78 578 45 HOH HOH . 
E 4 HOH AAA 79 579 119 HOH HOH . 
E 4 HOH AAA 80 580 36 HOH HOH . 
E 4 HOH AAA 81 581 16 HOH HOH . 
E 4 HOH AAA 82 582 22 HOH HOH . 
E 4 HOH AAA 83 583 37 HOH HOH . 
E 4 HOH AAA 84 584 165 HOH HOH . 
E 4 HOH AAA 85 585 4 HOH HOH . 
E 4 HOH AAA 86 586 140 HOH HOH . 
E 4 HOH AAA 87 587 38 HOH HOH . 
E 4 HOH AAA 88 588 137 HOH HOH . 
E 4 HOH AAA 89 589 139 HOH HOH . 
E 4 HOH AAA 90 590 79 HOH HOH . 
E 4 HOH AAA 91 591 131 HOH HOH . 
E 4 HOH AAA 92 592 175 HOH HOH . 
E 4 HOH AAA 93 593 100 HOH HOH . 
E 4 HOH AAA 94 594 174 HOH HOH . 
E 4 HOH AAA 95 595 150 HOH HOH . 
E 4 HOH AAA 96 596 133 HOH HOH . 
E 4 HOH AAA 97 597 105 HOH HOH . 
E 4 HOH AAA 98 598 169 HOH HOH . 
E 4 HOH AAA 99 599 67 HOH HOH . 
E 4 HOH AAA 100 600 123 HOH HOH . 
E 4 HOH AAA 101 601 179 HOH HOH . 
E 4 HOH AAA 102 602 47 HOH HOH . 
E 4 HOH AAA 103 603 64 HOH HOH . 
E 4 HOH AAA 104 604 154 HOH HOH . 
E 4 HOH AAA 105 605 158 HOH HOH . 
E 4 HOH AAA 106 606 115 HOH HOH . 
E 4 HOH AAA 107 607 35 HOH HOH . 
E 4 HOH AAA 108 608 208 HOH HOH . 
E 4 HOH AAA 109 609 14 HOH HOH . 
E 4 HOH AAA 110 610 181 HOH HOH . 
E 4 HOH AAA 111 611 7 HOH HOH . 
E 4 HOH AAA 112 612 177 HOH HOH . 
E 4 HOH AAA 113 613 27 HOH HOH . 
E 4 HOH AAA 114 614 65 HOH HOH . 
E 4 HOH AAA 115 615 30 HOH HOH . 
E 4 HOH AAA 116 616 170 HOH HOH . 
E 4 HOH AAA 117 617 54 HOH HOH . 
E 4 HOH AAA 118 618 71 HOH HOH . 
E 4 HOH AAA 119 619 41 HOH HOH . 
E 4 HOH AAA 120 620 6 HOH HOH . 
E 4 HOH AAA 121 621 49 HOH HOH . 
E 4 HOH AAA 122 622 59 HOH HOH . 
E 4 HOH AAA 123 623 163 HOH HOH . 
E 4 HOH AAA 124 624 2 HOH HOH . 
E 4 HOH AAA 125 625 149 HOH HOH . 
E 4 HOH AAA 126 626 44 HOH HOH . 
E 4 HOH AAA 127 627 61 HOH HOH . 
E 4 HOH AAA 128 628 85 HOH HOH . 
E 4 HOH AAA 129 629 3 HOH HOH . 
E 4 HOH AAA 130 630 78 HOH HOH . 
E 4 HOH AAA 131 631 32 HOH HOH . 
E 4 HOH AAA 132 632 87 HOH HOH . 
E 4 HOH AAA 133 633 159 HOH HOH . 
E 4 HOH AAA 134 634 148 HOH HOH . 
E 4 HOH AAA 135 635 13 HOH HOH . 
E 4 HOH AAA 136 636 15 HOH HOH . 
E 4 HOH AAA 137 637 80 HOH HOH . 
E 4 HOH AAA 138 638 94 HOH HOH . 
E 4 HOH AAA 139 639 125 HOH HOH . 
E 4 HOH AAA 140 640 90 HOH HOH . 
E 4 HOH AAA 141 641 31 HOH HOH . 
E 4 HOH AAA 142 642 91 HOH HOH . 
E 4 HOH AAA 143 643 56 HOH HOH . 
E 4 HOH AAA 144 644 73 HOH HOH . 
E 4 HOH AAA 145 645 162 HOH HOH . 
E 4 HOH AAA 146 646 26 HOH HOH . 
E 4 HOH AAA 147 647 50 HOH HOH . 
E 4 HOH AAA 148 648 12 HOH HOH . 
E 4 HOH AAA 149 649 202 HOH HOH . 
E 4 HOH AAA 150 650 184 HOH HOH . 
E 4 HOH AAA 151 651 75 HOH HOH . 
E 4 HOH AAA 152 652 107 HOH HOH . 
E 4 HOH AAA 153 653 111 HOH HOH . 
E 4 HOH AAA 154 654 109 HOH HOH . 
E 4 HOH AAA 155 655 138 HOH HOH . 
E 4 HOH AAA 156 656 129 HOH HOH . 
E 4 HOH AAA 157 657 68 HOH HOH . 
E 4 HOH AAA 158 658 110 HOH HOH . 
E 4 HOH AAA 159 659 63 HOH HOH . 
E 4 HOH AAA 160 660 121 HOH HOH . 
E 4 HOH AAA 161 661 182 HOH HOH . 
E 4 HOH AAA 162 662 24 HOH HOH . 
E 4 HOH AAA 163 663 134 HOH HOH . 
E 4 HOH AAA 164 664 70 HOH HOH . 
E 4 HOH AAA 165 665 200 HOH HOH . 
E 4 HOH AAA 166 666 112 HOH HOH . 
E 4 HOH AAA 167 667 199 HOH HOH . 
E 4 HOH AAA 168 668 106 HOH HOH . 
E 4 HOH AAA 169 669 128 HOH HOH . 
E 4 HOH AAA 170 670 81 HOH HOH . 
E 4 HOH AAA 171 671 212 HOH HOH . 
E 4 HOH AAA 172 672 160 HOH HOH . 
E 4 HOH AAA 173 673 218 HOH HOH . 
E 4 HOH AAA 174 674 178 HOH HOH . 
E 4 HOH AAA 175 675 195 HOH HOH . 
E 4 HOH AAA 176 676 92 HOH HOH . 
E 4 HOH AAA 177 677 192 HOH HOH . 
E 4 HOH AAA 178 678 141 HOH HOH . 
E 4 HOH AAA 179 679 204 HOH HOH . 
E 4 HOH AAA 180 680 197 HOH HOH . 
E 4 HOH AAA 181 681 201 HOH HOH . 
E 4 HOH AAA 182 682 194 HOH HOH . 
E 4 HOH AAA 183 683 120 HOH HOH . 
E 4 HOH AAA 184 684 190 HOH HOH . 
E 4 HOH AAA 185 685 188 HOH HOH . 
E 4 HOH AAA 186 686 55 HOH HOH . 
E 4 HOH AAA 187 687 206 HOH HOH . 
E 4 HOH AAA 188 688 187 HOH HOH . 
E 4 HOH AAA 189 689 142 HOH HOH . 
E 4 HOH AAA 190 690 152 HOH HOH . 
E 4 HOH AAA 191 691 207 HOH HOH . 
E 4 HOH AAA 192 692 167 HOH HOH . 
E 4 HOH AAA 193 693 76 HOH HOH . 
E 4 HOH AAA 194 694 93 HOH HOH . 
E 4 HOH AAA 195 695 58 HOH HOH . 
E 4 HOH AAA 196 696 132 HOH HOH . 
E 4 HOH AAA 197 697 209 HOH HOH . 
E 4 HOH AAA 198 698 102 HOH HOH . 
E 4 HOH AAA 199 699 155 HOH HOH . 
E 4 HOH AAA 200 700 144 HOH HOH . 
E 4 HOH AAA 201 701 189 HOH HOH . 
E 4 HOH AAA 202 702 210 HOH HOH . 
E 4 HOH AAA 203 703 198 HOH HOH . 
E 4 HOH AAA 204 704 203 HOH HOH . 
E 4 HOH AAA 205 705 191 HOH HOH . 
E 4 HOH AAA 206 706 143 HOH HOH . 
E 4 HOH AAA 207 707 72 HOH HOH . 
E 4 HOH AAA 208 708 186 HOH HOH . 
E 4 HOH AAA 209 709 185 HOH HOH . 
E 4 HOH AAA 210 710 97 HOH HOH . 
E 4 HOH AAA 211 711 113 HOH HOH . 
E 4 HOH AAA 212 712 173 HOH HOH . 
E 4 HOH AAA 213 713 171 HOH HOH . 
E 4 HOH AAA 214 714 127 HOH HOH . 
E 4 HOH AAA 215 715 196 HOH HOH . 
E 4 HOH AAA 216 716 193 HOH HOH . 
E 4 HOH AAA 217 717 205 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -11.087 18.138 20.337 1 52.46 0 C1 GOL 403 AAA 1 
HETATM 2 O O1 GOL . . . D 2 -10.496 18.7 19.154 1 38.27 0 O1 GOL 403 AAA 1 
HETATM 3 C C2 GOL . . . D 2 -12.15 19.025 20.978 1 56.44 0 C2 GOL 403 AAA 1 
HETATM 4 O O2 GOL . . . D 2 -11.546 20.051 21.767 1 71.92 0 O2 GOL 403 AAA 1 
HETATM 5 C C3 GOL . . . D 2 -13.109 18.296 21.898 1 56.16 0 C3 GOL 403 AAA 1 
HETATM 6 O O3 GOL . . . D 2 -12.511 17.147 22.477 1 66.07 0 O3 GOL 403 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#