data_7LMJ
#
_model_server_result.job_id            gP3qWD1DDOHOCsRMEEpbwA 
_model_server_result.datetime_utc      '2024-11-14 23:07:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lmj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    7LMJ 
#
_exptl.entry_id    7LMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.299 
_cell.angle_gamma         90 
_cell.entry_id            7LMJ 
_cell.length_a            107.539 
_cell.length_b            82.712 
_cell.length_c            53.2 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LMJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7LMJ 
_atom_sites.fract_transf_matrix[1][1]    0.009299 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002544 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01209 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PEG AAA 1 401 401 PEG PEG . 
C 3 GOL AAA 1 402 601 GOL GOL . 
D 3 GOL AAA 1 403 801 GOL GOL . 
E 4 Y67 AAA 1 404 901 Y67 001 . 
F 3 GOL AAA 1 405 1001 GOL GOL . 
G 2 PEG AAA 1 406 1101 PEG PEG . 
H 5 HOH AAA 1 501 284 HOH HOH . 
H 5 HOH AAA 2 502 185 HOH HOH . 
H 5 HOH AAA 3 503 194 HOH HOH . 
H 5 HOH AAA 4 504 286 HOH HOH . 
H 5 HOH AAA 5 505 101 HOH HOH . 
H 5 HOH AAA 6 506 283 HOH HOH . 
H 5 HOH AAA 7 507 67 HOH HOH . 
H 5 HOH AAA 8 508 68 HOH HOH . 
H 5 HOH AAA 9 509 170 HOH HOH . 
H 5 HOH AAA 10 510 199 HOH HOH . 
H 5 HOH AAA 11 511 133 HOH HOH . 
H 5 HOH AAA 12 512 28 HOH HOH . 
H 5 HOH AAA 13 513 88 HOH HOH . 
H 5 HOH AAA 14 514 155 HOH HOH . 
H 5 HOH AAA 15 515 106 HOH HOH . 
H 5 HOH AAA 16 516 75 HOH HOH . 
H 5 HOH AAA 17 517 113 HOH HOH . 
H 5 HOH AAA 18 518 282 HOH HOH . 
H 5 HOH AAA 19 519 103 HOH HOH . 
H 5 HOH AAA 20 520 223 HOH HOH . 
H 5 HOH AAA 21 521 22 HOH HOH . 
H 5 HOH AAA 22 522 44 HOH HOH . 
H 5 HOH AAA 23 523 214 HOH HOH . 
H 5 HOH AAA 24 524 129 HOH HOH . 
H 5 HOH AAA 25 525 285 HOH HOH . 
H 5 HOH AAA 26 526 127 HOH HOH . 
H 5 HOH AAA 27 527 7 HOH HOH . 
H 5 HOH AAA 28 528 48 HOH HOH . 
H 5 HOH AAA 29 529 104 HOH HOH . 
H 5 HOH AAA 30 530 47 HOH HOH . 
H 5 HOH AAA 31 531 121 HOH HOH . 
H 5 HOH AAA 32 532 41 HOH HOH . 
H 5 HOH AAA 33 533 34 HOH HOH . 
H 5 HOH AAA 34 534 105 HOH HOH . 
H 5 HOH AAA 35 535 158 HOH HOH . 
H 5 HOH AAA 36 536 152 HOH HOH . 
H 5 HOH AAA 37 537 95 HOH HOH . 
H 5 HOH AAA 38 538 90 HOH HOH . 
H 5 HOH AAA 39 539 64 HOH HOH . 
H 5 HOH AAA 40 540 294 HOH HOH . 
H 5 HOH AAA 41 541 12 HOH HOH . 
H 5 HOH AAA 42 542 201 HOH HOH . 
H 5 HOH AAA 43 543 150 HOH HOH . 
H 5 HOH AAA 44 544 11 HOH HOH . 
H 5 HOH AAA 45 545 33 HOH HOH . 
H 5 HOH AAA 46 546 183 HOH HOH . 
H 5 HOH AAA 47 547 228 HOH HOH . 
H 5 HOH AAA 48 548 1 HOH HOH . 
H 5 HOH AAA 49 549 69 HOH HOH . 
H 5 HOH AAA 50 550 202 HOH HOH . 
H 5 HOH AAA 51 551 128 HOH HOH . 
H 5 HOH AAA 52 552 139 HOH HOH . 
H 5 HOH AAA 53 553 100 HOH HOH . 
H 5 HOH AAA 54 554 39 HOH HOH . 
H 5 HOH AAA 55 555 29 HOH HOH . 
H 5 HOH AAA 56 556 62 HOH HOH . 
H 5 HOH AAA 57 557 136 HOH HOH . 
H 5 HOH AAA 58 558 10 HOH HOH . 
H 5 HOH AAA 59 559 243 HOH HOH . 
H 5 HOH AAA 60 560 207 HOH HOH . 
H 5 HOH AAA 61 561 17 HOH HOH . 
H 5 HOH AAA 62 562 77 HOH HOH . 
H 5 HOH AAA 63 563 146 HOH HOH . 
H 5 HOH AAA 64 564 18 HOH HOH . 
H 5 HOH AAA 65 565 205 HOH HOH . 
H 5 HOH AAA 66 566 60 HOH HOH . 
H 5 HOH AAA 67 567 211 HOH HOH . 
H 5 HOH AAA 68 568 55 HOH HOH . 
H 5 HOH AAA 69 569 156 HOH HOH . 
H 5 HOH AAA 70 570 65 HOH HOH . 
H 5 HOH AAA 71 571 97 HOH HOH . 
H 5 HOH AAA 72 572 24 HOH HOH . 
H 5 HOH AAA 73 573 176 HOH HOH . 
H 5 HOH AAA 74 574 240 HOH HOH . 
H 5 HOH AAA 75 575 15 HOH HOH . 
H 5 HOH AAA 76 576 89 HOH HOH . 
H 5 HOH AAA 77 577 93 HOH HOH . 
H 5 HOH AAA 78 578 134 HOH HOH . 
H 5 HOH AAA 79 579 4 HOH HOH . 
H 5 HOH AAA 80 580 87 HOH HOH . 
H 5 HOH AAA 81 581 175 HOH HOH . 
H 5 HOH AAA 82 582 2 HOH HOH . 
H 5 HOH AAA 83 583 180 HOH HOH . 
H 5 HOH AAA 84 584 222 HOH HOH . 
H 5 HOH AAA 85 585 118 HOH HOH . 
H 5 HOH AAA 86 586 110 HOH HOH . 
H 5 HOH AAA 87 587 192 HOH HOH . 
H 5 HOH AAA 88 588 168 HOH HOH . 
H 5 HOH AAA 89 589 117 HOH HOH . 
H 5 HOH AAA 90 590 191 HOH HOH . 
H 5 HOH AAA 91 591 159 HOH HOH . 
H 5 HOH AAA 92 592 278 HOH HOH . 
H 5 HOH AAA 93 593 6 HOH HOH . 
H 5 HOH AAA 94 594 280 HOH HOH . 
H 5 HOH AAA 95 595 59 HOH HOH . 
H 5 HOH AAA 96 596 124 HOH HOH . 
H 5 HOH AAA 97 597 54 HOH HOH . 
H 5 HOH AAA 98 598 20 HOH HOH . 
H 5 HOH AAA 99 599 42 HOH HOH . 
H 5 HOH AAA 100 600 149 HOH HOH . 
H 5 HOH AAA 101 601 187 HOH HOH . 
H 5 HOH AAA 102 602 13 HOH HOH . 
H 5 HOH AAA 103 603 58 HOH HOH . 
H 5 HOH AAA 104 604 76 HOH HOH . 
H 5 HOH AAA 105 605 112 HOH HOH . 
H 5 HOH AAA 106 606 37 HOH HOH . 
H 5 HOH AAA 107 607 196 HOH HOH . 
H 5 HOH AAA 108 608 98 HOH HOH . 
H 5 HOH AAA 109 609 252 HOH HOH . 
H 5 HOH AAA 110 610 16 HOH HOH . 
H 5 HOH AAA 111 611 19 HOH HOH . 
H 5 HOH AAA 112 612 131 HOH HOH . 
H 5 HOH AAA 113 613 35 HOH HOH . 
H 5 HOH AAA 114 614 102 HOH HOH . 
H 5 HOH AAA 115 615 135 HOH HOH . 
H 5 HOH AAA 116 616 5 HOH HOH . 
H 5 HOH AAA 117 617 63 HOH HOH . 
H 5 HOH AAA 118 618 172 HOH HOH . 
H 5 HOH AAA 119 619 71 HOH HOH . 
H 5 HOH AAA 120 620 130 HOH HOH . 
H 5 HOH AAA 121 621 109 HOH HOH . 
H 5 HOH AAA 122 622 144 HOH HOH . 
H 5 HOH AAA 123 623 151 HOH HOH . 
H 5 HOH AAA 124 624 14 HOH HOH . 
H 5 HOH AAA 125 625 288 HOH HOH . 
H 5 HOH AAA 126 626 188 HOH HOH . 
H 5 HOH AAA 127 627 31 HOH HOH . 
H 5 HOH AAA 128 628 208 HOH HOH . 
H 5 HOH AAA 129 629 206 HOH HOH . 
H 5 HOH AAA 130 630 296 HOH HOH . 
H 5 HOH AAA 131 631 78 HOH HOH . 
H 5 HOH AAA 132 632 45 HOH HOH . 
H 5 HOH AAA 133 633 83 HOH HOH . 
H 5 HOH AAA 134 634 145 HOH HOH . 
H 5 HOH AAA 135 635 43 HOH HOH . 
H 5 HOH AAA 136 636 51 HOH HOH . 
H 5 HOH AAA 137 637 190 HOH HOH . 
H 5 HOH AAA 138 638 94 HOH HOH . 
H 5 HOH AAA 139 639 30 HOH HOH . 
H 5 HOH AAA 140 640 9 HOH HOH . 
H 5 HOH AAA 141 641 57 HOH HOH . 
H 5 HOH AAA 142 642 107 HOH HOH . 
H 5 HOH AAA 143 643 56 HOH HOH . 
H 5 HOH AAA 144 644 161 HOH HOH . 
H 5 HOH AAA 145 645 96 HOH HOH . 
H 5 HOH AAA 146 646 27 HOH HOH . 
H 5 HOH AAA 147 647 38 HOH HOH . 
H 5 HOH AAA 148 648 292 HOH HOH . 
H 5 HOH AAA 149 649 32 HOH HOH . 
H 5 HOH AAA 150 650 73 HOH HOH . 
H 5 HOH AAA 151 651 49 HOH HOH . 
H 5 HOH AAA 152 652 92 HOH HOH . 
H 5 HOH AAA 153 653 148 HOH HOH . 
H 5 HOH AAA 154 654 23 HOH HOH . 
H 5 HOH AAA 155 655 46 HOH HOH . 
H 5 HOH AAA 156 656 26 HOH HOH . 
H 5 HOH AAA 157 657 179 HOH HOH . 
H 5 HOH AAA 158 658 281 HOH HOH . 
H 5 HOH AAA 159 659 224 HOH HOH . 
H 5 HOH AAA 160 660 21 HOH HOH . 
H 5 HOH AAA 161 661 91 HOH HOH . 
H 5 HOH AAA 162 662 114 HOH HOH . 
H 5 HOH AAA 163 663 111 HOH HOH . 
H 5 HOH AAA 164 664 198 HOH HOH . 
H 5 HOH AAA 165 665 25 HOH HOH . 
H 5 HOH AAA 166 666 36 HOH HOH . 
H 5 HOH AAA 167 667 50 HOH HOH . 
H 5 HOH AAA 168 668 174 HOH HOH . 
H 5 HOH AAA 169 669 72 HOH HOH . 
H 5 HOH AAA 170 670 119 HOH HOH . 
H 5 HOH AAA 171 671 254 HOH HOH . 
H 5 HOH AAA 172 672 147 HOH HOH . 
H 5 HOH AAA 173 673 167 HOH HOH . 
H 5 HOH AAA 174 674 298 HOH HOH . 
H 5 HOH AAA 175 675 126 HOH HOH . 
H 5 HOH AAA 176 676 251 HOH HOH . 
H 5 HOH AAA 177 677 275 HOH HOH . 
H 5 HOH AAA 178 678 295 HOH HOH . 
H 5 HOH AAA 179 679 268 HOH HOH . 
H 5 HOH AAA 180 680 143 HOH HOH . 
H 5 HOH AAA 181 681 66 HOH HOH . 
H 5 HOH AAA 182 682 293 HOH HOH . 
H 5 HOH AAA 183 683 247 HOH HOH . 
H 5 HOH AAA 184 684 210 HOH HOH . 
H 5 HOH AAA 185 685 231 HOH HOH . 
H 5 HOH AAA 186 686 108 HOH HOH . 
H 5 HOH AAA 187 687 82 HOH HOH . 
H 5 HOH AAA 188 688 215 HOH HOH . 
H 5 HOH AAA 189 689 297 HOH HOH . 
H 5 HOH AAA 190 690 203 HOH HOH . 
H 5 HOH AAA 191 691 212 HOH HOH . 
H 5 HOH AAA 192 692 81 HOH HOH . 
H 5 HOH AAA 193 693 235 HOH HOH . 
H 5 HOH AAA 194 694 253 HOH HOH . 
H 5 HOH AAA 195 695 165 HOH HOH . 
H 5 HOH AAA 196 696 153 HOH HOH . 
H 5 HOH AAA 197 697 272 HOH HOH . 
H 5 HOH AAA 198 698 276 HOH HOH . 
H 5 HOH AAA 199 699 138 HOH HOH . 
H 5 HOH AAA 200 700 262 HOH HOH . 
H 5 HOH AAA 201 701 226 HOH HOH . 
H 5 HOH AAA 202 702 8 HOH HOH . 
H 5 HOH AAA 203 703 227 HOH HOH . 
H 5 HOH AAA 204 704 52 HOH HOH . 
H 5 HOH AAA 205 705 299 HOH HOH . 
H 5 HOH AAA 206 706 257 HOH HOH . 
H 5 HOH AAA 207 707 123 HOH HOH . 
H 5 HOH AAA 208 708 233 HOH HOH . 
H 5 HOH AAA 209 709 137 HOH HOH . 
H 5 HOH AAA 210 710 200 HOH HOH . 
H 5 HOH AAA 211 711 218 HOH HOH . 
H 5 HOH AAA 212 712 269 HOH HOH . 
H 5 HOH AAA 213 713 164 HOH HOH . 
H 5 HOH AAA 214 714 70 HOH HOH . 
H 5 HOH AAA 215 715 256 HOH HOH . 
H 5 HOH AAA 216 716 216 HOH HOH . 
H 5 HOH AAA 217 717 234 HOH HOH . 
H 5 HOH AAA 218 718 259 HOH HOH . 
H 5 HOH AAA 219 719 3 HOH HOH . 
H 5 HOH AAA 220 720 241 HOH HOH . 
H 5 HOH AAA 221 721 132 HOH HOH . 
H 5 HOH AAA 222 722 301 HOH HOH . 
H 5 HOH AAA 223 723 166 HOH HOH . 
H 5 HOH AAA 224 724 263 HOH HOH . 
H 5 HOH AAA 225 725 300 HOH HOH . 
H 5 HOH AAA 226 726 99 HOH HOH . 
H 5 HOH AAA 227 727 221 HOH HOH . 
H 5 HOH AAA 228 728 122 HOH HOH . 
H 5 HOH AAA 229 729 258 HOH HOH . 
H 5 HOH AAA 230 730 140 HOH HOH . 
H 5 HOH AAA 231 731 273 HOH HOH . 
H 5 HOH AAA 232 732 239 HOH HOH . 
H 5 HOH AAA 233 733 255 HOH HOH . 
H 5 HOH AAA 234 734 271 HOH HOH . 
H 5 HOH AAA 235 735 277 HOH HOH . 
H 5 HOH AAA 236 736 232 HOH HOH . 
H 5 HOH AAA 237 737 266 HOH HOH . 
H 5 HOH AAA 238 738 290 HOH HOH . 
H 5 HOH AAA 239 739 177 HOH HOH . 
H 5 HOH AAA 240 740 267 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 -24.841 -37.102 1.268 1 80.68 0 C1 GOL 405 AAA 1 
HETATM 2 O O1 GOL . . . F 3 -23.433 -37.255 1.292 1 67.96 0 O1 GOL 405 AAA 1 
HETATM 3 C C2 GOL . . . F 3 -25.509 -38.45 1.063 1 68.55 0 C2 GOL 405 AAA 1 
HETATM 4 O O2 GOL . . . F 3 -24.74 -39.212 0.131 1 79.95 0 O2 GOL 405 AAA 1 
HETATM 5 C C3 GOL . . . F 3 -26.946 -38.339 0.596 1 82.24 0 C3 GOL 405 AAA 1 
HETATM 6 O O3 GOL . . . F 3 -27.865 -38.859 1.557 1 66.06 0 O3 GOL 405 AAA 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#