data_7LMY # _model_server_result.job_id 1eLwmJQt2YcatA-oqWYDTA _model_server_result.datetime_utc '2024-11-22 03:32:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":902}' # _entry.id 7LMY # _exptl.entry_id 7LMY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LMY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 L N N ? 2 M N N ? 2 Q N N ? 2 R N N ? 2 V N N ? 2 W N N ? 2 AA N N ? 2 BA N N ? 2 FA N N ? 2 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 252 A THR 252 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 G O3G ATP . A ATP 901 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc3 G O2B ATP . A ATP 901 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc4 H O2G ATP . A ATP 902 1_555 K MG MG . A MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 H O1A ATP . A ATP 902 1_555 K MG MG . A MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 B OG1 THR 252 B THR 252 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc7 L O3G ATP . B ATP 901 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc8 L O2B ATP . B ATP 901 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc9 M O2G ATP . B ATP 902 1_555 P MG MG . B MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc10 M O1A ATP . B ATP 902 1_555 P MG MG . B MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc11 C OG1 THR 252 C THR 252 1_555 T MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc12 Q O3G ATP . C ATP 901 1_555 T MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc13 Q O2B ATP . C ATP 901 1_555 T MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc14 R O2G ATP . C ATP 902 1_555 U MG MG . C MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc15 R O1A ATP . C ATP 902 1_555 U MG MG . C MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 D OG1 THR 252 D THR 252 1_555 Y MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc17 V O3G ATP . D ATP 901 1_555 Y MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc18 V O2B ATP . D ATP 901 1_555 Y MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc19 W O2G ATP . D ATP 902 1_555 Z MG MG . D MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc20 W O1A ATP . D ATP 902 1_555 Z MG MG . D MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc21 E OG1 THR 252 E THR 252 1_555 DA MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc22 AA O3G ATP . E ATP 901 1_555 DA MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc23 AA O2B ATP . E ATP 901 1_555 DA MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc24 BA O2G ATP . E ATP 902 1_555 EA MG MG . E MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc25 BA O1A ATP . E ATP 902 1_555 EA MG MG . E MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc26 F OG1 THR 252 F THR 252 1_555 IA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc27 FA O3G ATP . F ATP 901 1_555 IA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc28 FA O2B ATP . F ATP 901 1_555 IA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc29 GA O2G ATP . F ATP 902 1_555 JA MG MG . F MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc30 GA O1A ATP . F ATP 902 1_555 JA MG MG . F MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7LMY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 901 801 ATP ATP . H 2 ATP A 1 902 901 ATP ATP . I 3 Y6Y A 1 903 1001 Y6Y NM3 . J 4 MG A 1 904 1 MG MG . K 4 MG A 1 905 7 MG MG . L 2 ATP B 1 901 801 ATP ATP . M 2 ATP B 1 902 901 ATP ATP . N 3 Y6Y B 1 903 1001 Y6Y NM3 . O 4 MG B 1 904 8 MG MG . P 4 MG B 1 905 9 MG MG . Q 2 ATP C 1 901 801 ATP ATP . R 2 ATP C 1 902 901 ATP ATP . S 3 Y6Y C 1 903 1001 Y6Y NM3 . T 4 MG C 1 904 10 MG MG . U 4 MG C 1 905 11 MG MG . V 2 ATP D 1 901 801 ATP ATP . W 2 ATP D 1 902 901 ATP ATP . X 3 Y6Y D 1 903 1001 Y6Y NM3 . Y 4 MG D 1 904 12 MG MG . Z 4 MG D 1 905 13 MG MG . AA 2 ATP E 1 901 801 ATP ATP . BA 2 ATP E 1 902 901 ATP ATP . CA 3 Y6Y E 1 903 1001 Y6Y NM3 . DA 4 MG E 1 904 14 MG MG . EA 4 MG E 1 905 15 MG MG . FA 2 ATP F 1 901 801 ATP ATP . GA 2 ATP F 1 902 901 ATP ATP . HA 3 Y6Y F 1 903 1001 Y6Y NM3 . IA 4 MG F 1 904 16 MG MG . JA 4 MG F 1 905 17 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . R 2 176.739 138.231 136.763 1 28.45 ? PG ATP 902 C 1 HETATM 2 O O1G ATP . . . R 2 176.758 139.72 136.711 1 28.45 ? O1G ATP 902 C 1 HETATM 3 O O2G ATP . . . R 2 176.55 137.668 138.174 1 28.45 ? O2G ATP 902 C 1 HETATM 4 O O3G ATP . . . R 2 175.705 137.595 135.832 1 28.45 ? O3G ATP 902 C 1 HETATM 5 P PB ATP . . . R 2 179.408 136.881 136.863 1 28.45 ? PB ATP 902 C 1 HETATM 6 O O1B ATP . . . R 2 179.865 137.485 138.127 1 28.45 ? O1B ATP 902 C 1 HETATM 7 O O2B ATP . . . R 2 180.448 136.813 135.75 1 28.45 ? O2B ATP 902 C 1 HETATM 8 O O3B ATP . . . R 2 178.14 137.635 136.276 1 28.45 ? O3B ATP 902 C 1 HETATM 9 P PA ATP . . . R 2 178.531 134.451 138.298 1 28.45 ? PA ATP 902 C 1 HETATM 10 O O1A ATP . . . R 2 177.792 135.16 139.362 1 28.45 ? O1A ATP 902 C 1 HETATM 11 O O2A ATP . . . R 2 179.853 133.834 138.738 1 28.45 ? O2A ATP 902 C 1 HETATM 12 O O3A ATP . . . R 2 178.844 135.407 137.072 1 28.45 ? O3A ATP 902 C 1 HETATM 13 O O5' ATP . . . R 2 177.648 133.315 137.646 1 28.45 ? O5' ATP 902 C 1 HETATM 14 C C5' ATP . . . R 2 176.207 133.373 137.685 1 28.45 ? C5' ATP 902 C 1 HETATM 15 C C4' ATP . . . R 2 175.631 132.006 137.406 1 28.45 ? C4' ATP 902 C 1 HETATM 16 O O4' ATP . . . R 2 176.309 131.406 136.28 1 28.45 ? O4' ATP 902 C 1 HETATM 17 C C3' ATP . . . R 2 175.734 130.999 138.55 1 28.45 ? C3' ATP 902 C 1 HETATM 18 O O3' ATP . . . R 2 174.583 130.165 138.598 1 28.45 ? O3' ATP 902 C 1 HETATM 19 C C2' ATP . . . R 2 176.986 130.2 138.187 1 28.45 ? C2' ATP 902 C 1 HETATM 20 O O2' ATP . . . R 2 176.934 128.878 138.709 1 28.45 ? O2' ATP 902 C 1 HETATM 21 C C1' ATP . . . R 2 176.898 130.177 136.661 1 28.45 ? C1' ATP 902 C 1 HETATM 22 N N9 ATP . . . R 2 178.19 130.068 135.994 1 28.45 ? N9 ATP 902 C 1 HETATM 23 C C8 ATP . . . R 2 178.789 131.012 135.203 1 28.45 ? C8 ATP 902 C 1 HETATM 24 N N7 ATP . . . R 2 179.956 130.652 134.729 1 28.45 ? N7 ATP 902 C 1 HETATM 25 C C5 ATP . . . R 2 180.141 129.379 135.246 1 28.45 ? C5 ATP 902 C 1 HETATM 26 C C6 ATP . . . R 2 181.187 128.446 135.12 1 28.45 ? C6 ATP 902 C 1 HETATM 27 N N6 ATP . . . R 2 182.293 128.66 134.401 1 28.45 ? N6 ATP 902 C 1 HETATM 28 N N1 ATP . . . R 2 181.057 127.266 135.765 1 28.45 ? N1 ATP 902 C 1 HETATM 29 C C2 ATP . . . R 2 179.955 127.045 136.485 1 28.45 ? C2 ATP 902 C 1 HETATM 30 N N3 ATP . . . R 2 178.906 127.847 136.677 1 28.45 ? N3 ATP 902 C 1 HETATM 31 C C4 ATP . . . R 2 179.06 129.005 136.027 1 28.45 ? C4 ATP 902 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #