data_7LMY # _model_server_result.job_id nvrSIZhoBlbNRvEvr6LJag _model_server_result.datetime_utc '2024-11-25 01:13:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":904}' # _entry.id 7LMY # _exptl.entry_id 7LMY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LMY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 O N N ? 4 P N N ? 4 T N N ? 4 U N N ? 4 Y N N ? 4 Z N N ? 4 DA N N ? 4 EA N N ? 4 IA N N ? 4 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 252 A THR 252 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 G O3G ATP . A ATP 901 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc3 G O2B ATP . A ATP 901 1_555 J MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc4 H O2G ATP . A ATP 902 1_555 K MG MG . A MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 H O1A ATP . A ATP 902 1_555 K MG MG . A MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 B OG1 THR 252 B THR 252 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc7 L O3G ATP . B ATP 901 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc8 L O2B ATP . B ATP 901 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc9 M O2G ATP . B ATP 902 1_555 P MG MG . B MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc10 M O1A ATP . B ATP 902 1_555 P MG MG . B MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc11 C OG1 THR 252 C THR 252 1_555 T MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc12 Q O3G ATP . C ATP 901 1_555 T MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc13 Q O2B ATP . C ATP 901 1_555 T MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc14 R O2G ATP . C ATP 902 1_555 U MG MG . C MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc15 R O1A ATP . C ATP 902 1_555 U MG MG . C MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 D OG1 THR 252 D THR 252 1_555 Y MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc17 V O3G ATP . D ATP 901 1_555 Y MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc18 V O2B ATP . D ATP 901 1_555 Y MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc19 W O2G ATP . D ATP 902 1_555 Z MG MG . D MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc20 W O1A ATP . D ATP 902 1_555 Z MG MG . D MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc21 E OG1 THR 252 E THR 252 1_555 DA MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc22 AA O3G ATP . E ATP 901 1_555 DA MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc23 AA O2B ATP . E ATP 901 1_555 DA MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc24 BA O2G ATP . E ATP 902 1_555 EA MG MG . E MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc25 BA O1A ATP . E ATP 902 1_555 EA MG MG . E MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc26 F OG1 THR 252 F THR 252 1_555 IA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc27 FA O3G ATP . F ATP 901 1_555 IA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc28 FA O2B ATP . F ATP 901 1_555 IA MG MG . F MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc29 GA O2G ATP . F ATP 902 1_555 JA MG MG . F MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc30 GA O1A ATP . F ATP 902 1_555 JA MG MG . F MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LMY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 901 801 ATP ATP . H 2 ATP A 1 902 901 ATP ATP . I 3 Y6Y A 1 903 1001 Y6Y NM3 . J 4 MG A 1 904 1 MG MG . K 4 MG A 1 905 7 MG MG . L 2 ATP B 1 901 801 ATP ATP . M 2 ATP B 1 902 901 ATP ATP . N 3 Y6Y B 1 903 1001 Y6Y NM3 . O 4 MG B 1 904 8 MG MG . P 4 MG B 1 905 9 MG MG . Q 2 ATP C 1 901 801 ATP ATP . R 2 ATP C 1 902 901 ATP ATP . S 3 Y6Y C 1 903 1001 Y6Y NM3 . T 4 MG C 1 904 10 MG MG . U 4 MG C 1 905 11 MG MG . V 2 ATP D 1 901 801 ATP ATP . W 2 ATP D 1 902 901 ATP ATP . X 3 Y6Y D 1 903 1001 Y6Y NM3 . Y 4 MG D 1 904 12 MG MG . Z 4 MG D 1 905 13 MG MG . AA 2 ATP E 1 901 801 ATP ATP . BA 2 ATP E 1 902 901 ATP ATP . CA 3 Y6Y E 1 903 1001 Y6Y NM3 . DA 4 MG E 1 904 14 MG MG . EA 4 MG E 1 905 15 MG MG . FA 2 ATP F 1 901 801 ATP ATP . GA 2 ATP F 1 902 901 ATP ATP . HA 3 Y6Y F 1 903 1001 Y6Y NM3 . IA 4 MG F 1 904 16 MG MG . JA 4 MG F 1 905 17 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 4 _atom_site.Cartn_x 175.415 _atom_site.Cartn_y 139.879 _atom_site.Cartn_z 177.737 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 904 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 1 #