data_7LMZ
#
_model_server_result.job_id            GqLDb6uwKy132bKc-Sv-Zw 
_model_server_result.datetime_utc      '2025-10-01 16:11:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lmz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":902}' 
#
_entry.id    7LMZ 
#
_exptl.entry_id    7LMZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LMZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LMZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 M N N 
? 4 N N N 
? 4 Q N N 
? 4 R N N 
? 4 U N N 
? 4 V N N 
? 4 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 609 A ASP 609 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc2 B OG1 THR 525 B THR 525 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc3 J O1G ATP . B ATP 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc4 J O1B ATP . B ATP 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc5 C OG1 THR 252 C THR 252 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc6 C OG1 THR 525 C THR 525 1_555 P MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc7 M O1G ATP . C ATP 901 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc8 M O2B ATP . C ATP 901 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc9 N O1G ATP . C ATP 902 1_555 P MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc10 N O1B ATP . C ATP 902 1_555 P MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc11 D OG1 THR 252 D THR 252 1_555 S MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc12 D OG1 THR 525 D THR 525 1_555 T MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc13 Q O3G ATP . D ATP 901 1_555 S MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc14 Q O2B ATP . D ATP 901 1_555 S MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc15 R O1G ATP . D ATP 902 1_555 T MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc16 R O1B ATP . D ATP 902 1_555 T MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? 
metalc ? metalc17 E OG1 THR 252 E THR 252 1_555 W MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc18 E OG1 THR 525 E THR 525 1_555 X MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc19 U O3G ATP . E ATP 901 1_555 W MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc20 U O2B ATP . E ATP 901 1_555 W MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc21 V O1G ATP . E ATP 902 1_555 X MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc22 V O1B ATP . E ATP 902 1_555 X MG MG . E MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc23 Y O2G ATP . F ATP 901 1_555 AA MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     ? 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     7LMZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 ADP A 1 901 901 ADP ADP ? 
I 3 ADP A 1 902 902 ADP ADP ? 
J 4 ATP B 1 901 901 ATP ATP ? 
K 3 ADP B 1 902 902 ADP ADP ? 
L 5 MG B 1 903 1 MG MG ? 
M 4 ATP C 1 901 801 ATP ATP ? 
N 4 ATP C 1 902 901 ATP ATP ? 
O 5 MG C 1 903 2 MG MG ? 
P 5 MG C 1 904 3 MG MG ? 
Q 4 ATP D 1 901 801 ATP ATP ? 
R 4 ATP D 1 902 901 ATP ATP ? 
S 5 MG D 1 903 4 MG MG ? 
T 5 MG D 1 904 5 MG MG ? 
U 4 ATP E 1 901 801 ATP ATP ? 
V 4 ATP E 1 902 901 ATP ATP ? 
W 5 MG E 1 903 6 MG MG ? 
X 5 MG E 1 904 7 MG MG ? 
Y 4 ATP F 1 901 801 ATP ATP ? 
Z 3 ADP F 1 902 901 ADP ADP ? 
AA 5 MG F 1 903 8 MG MG ? 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . N 4 149.192 143.441 206.074 1 29.82 ? PG ATP 902 C 1 
HETATM 2 O O1G ATP . . . N 4 149.228 144.003 204.7 1 29.82 ? O1G ATP 902 C 1 
HETATM 3 O O2G ATP . . . N 4 148.949 144.485 207.147 1 29.82 ? O2G ATP 902 C 1 
HETATM 4 O O3G ATP . . . N 4 150.422 142.62 206.427 1 29.82 ? O3G ATP 902 C 1 
HETATM 5 P PB ATP . . . N 4 146.696 141.99 205.431 1 29.82 ? PB ATP 902 C 1 
HETATM 6 O O1B ATP . . . N 4 146.606 142.702 204.153 1 29.82 ? O1B ATP 902 C 1 
HETATM 7 O O2B ATP . . . N 4 145.52 142.149 206.381 1 29.82 ? O2B ATP 902 C 1 
HETATM 8 O O3B ATP . . . N 4 147.982 142.432 206.217 1 29.82 ? O3B ATP 902 C 1 
HETATM 9 P PA ATP . . . N 4 146.657 139.362 204.095 1 29.82 ? PA ATP 902 C 1 
HETATM 10 O O1A ATP . . . N 4 147.379 139.674 202.848 1 29.82 ? O1A ATP 902 C 1 
HETATM 11 O O2A ATP . . . N 4 145.151 139.254 203.953 1 29.82 ? O2A ATP 902 C 1 
HETATM 12 O O3A ATP . . . N 4 146.937 140.431 205.224 1 29.82 ? O3A ATP 902 C 1 
HETATM 13 O O5' ATP . . . N 4 147.178 138.008 204.716 1 29.82 ? O5' ATP 902 C 1 
HETATM 14 C C5' ATP . . . N 4 147.953 137.08 203.93 1 29.82 ? C5' ATP 902 C 1 
HETATM 15 C C4' ATP . . . N 4 147.746 135.678 204.435 1 29.82 ? C4' ATP 902 C 1 
HETATM 16 O O4' ATP . . . N 4 146.794 135.684 205.52 1 29.82 ? O4' ATP 902 C 1 
HETATM 17 C C3' ATP . . . N 4 147.226 134.684 203.396 1 29.82 ? C3' ATP 902 C 1 
HETATM 18 O O3' ATP . . . N 4 147.95 133.46 203.446 1 29.82 ? O3' ATP 902 C 1 
HETATM 19 C C2' ATP . . . N 4 145.766 134.474 203.802 1 29.82 ? C2' ATP 902 C 1 
HETATM 20 O O2' ATP . . . N 4 145.36 133.143 203.514 1 29.82 ? O2' ATP 902 C 1 
HETATM 21 C C1' ATP . . . N 4 145.832 134.676 205.311 1 29.82 ? C1' ATP 902 C 1 
HETATM 22 N N9 ATP . . . N 4 144.578 135.12 205.907 1 29.82 ? N9 ATP 902 C 1 
HETATM 23 C C8 ATP . . . N 4 144.399 136.224 206.695 1 29.82 ? C8 ATP 902 C 1 
HETATM 24 N N7 ATP . . . N 4 143.167 136.399 207.101 1 29.82 ? N7 ATP 902 C 1 
HETATM 25 C C5 ATP . . . N 4 142.483 135.335 206.536 1 29.82 ? C5 ATP 902 C 1 
HETATM 26 C C6 ATP . . . N 4 141.133 134.944 206.584 1 29.82 ? C6 ATP 902 C 1 
HETATM 27 N N6 ATP . . . N 4 140.189 135.61 207.255 1 29.82 ? N6 ATP 902 C 1 
HETATM 28 N N1 ATP . . . N 4 140.777 133.828 205.912 1 29.82 ? N1 ATP 902 C 1 
HETATM 29 C C2 ATP . . . N 4 141.715 133.157 205.239 1 29.82 ? C2 ATP 902 C 1 
HETATM 30 N N3 ATP . . . N 4 143.015 133.429 205.124 1 29.82 ? N3 ATP 902 C 1 
HETATM 31 C C4 ATP . . . N 4 143.34 134.536 205.8 1 29.82 ? C4 ATP 902 C 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#