data_7LNE # _model_server_result.job_id 21XfZHC3_KCwwhDk2gbSBQ _model_server_result.datetime_utc '2024-10-15 11:27:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":105}' # _entry.id 7LNE # _exptl.entry_id 7LNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANINE ARABINOSE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7LNE _cell.length_a 43.408 _cell.length_b 43.408 _cell.length_c 86.554 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A P A 5 A A 5 1_555 D O3' LCG . A LCG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? covale ? covale2 A O3' C 13 A C 13 1_555 E P GAO . A GAO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale3 C O3' LCC . A LCC 101 1_555 D P LCG . A LCG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.571 ? covale ? covale4 C P LCC . A LCC 101 1_555 K O3' LCC . B LCC 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.554 ? covale ? covale5 G O3' LKC . A LKC 105 1_555 H P LCC . A LCC 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale6 H O3' LCC . A LCC 106 1_555 L P LCC . B LCC 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.588 ? covale ? covale7 B P A 5 B A 5 1_555 M O3' LCG . B LCG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? covale ? covale8 B O3' C 13 B C 13 1_555 N P GAO . B GAO 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale9 J O3' LKC . B LKC 101 1_555 K P LCC . B LCC 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.633 ? covale ? covale10 L O3' LCC . B LCC 103 1_555 M P LCG . B LCG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? hydrog WATSON-CRICK hydrog1 A N1 A 5 A A 5 1_555 B N3 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 A 5 A A 5 1_555 B O4 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 C 6 A C 6 1_555 B N1 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 C 6 A C 6 1_555 B O6 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 C 6 A C 6 1_555 B N2 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 U 7 A U 7 1_555 B N1 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 U 7 A U 7 1_555 B N6 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 U 8 A U 8 1_555 B N1 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 U 8 A U 8 1_555 B N6 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 A 9 A A 9 1_555 B N3 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 A 9 A A 9 1_555 B O4 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 A 10 A A 10 1_555 B N3 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 A 10 A A 10 1_555 B O4 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 G 11 A G 11 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 G 11 A G 11 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 G 11 A G 11 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 U 12 A U 12 1_555 B N1 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 U 12 A U 12 1_555 B N6 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id GAO _chem_comp.mon_nstd_flag n _chem_comp.name "GUANINE ARABINOSE-5'-PHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP3 P GAO sing 116 n n OP3 HOP3 GAO sing 117 n n P OP1 GAO doub 118 n n P OP2 GAO sing 119 n n P O5' GAO sing 120 n n OP2 HOP2 GAO sing 121 n n O5' C5' GAO sing 122 n n C5' C4' GAO sing 123 n n C5' H5' GAO sing 124 n n C5' "H5''" GAO sing 125 n n C4' O4' GAO sing 126 n n C4' C3' GAO sing 127 n n C4' H4' GAO sing 128 n n O4' C1' GAO sing 129 n n C3' O3' GAO sing 130 n n C3' C2' GAO sing 131 n n C3' H3' GAO sing 132 n n O3' HO3' GAO sing 133 n n C2' O2' GAO sing 134 n n C2' C1' GAO sing 135 n n C2' H2' GAO sing 136 n n O2' HO2' GAO sing 137 n n C1' N9 GAO sing 138 n n C1' H1' GAO sing 139 n n N9 C8 GAO sing 140 n y N9 C4 GAO sing 141 n y C8 N7 GAO doub 142 n y C8 H8 GAO sing 143 n n N7 C5 GAO sing 144 n y C5 C6 GAO sing 145 n n C5 C4 GAO doub 146 n y C6 O6 GAO doub 147 n n C6 N1 GAO sing 148 n n N1 C2 GAO sing 149 n n N1 H1 GAO sing 150 n n C2 N2 GAO sing 151 n n C2 N3 GAO doub 152 n n N2 H21 GAO sing 153 n n N2 H22 GAO sing 154 n n N3 C4 GAO sing 155 n n # _atom_sites.entry_id 7LNE _atom_sites.fract_transf_matrix[1][1] 0.023037 _atom_sites.fract_transf_matrix[1][2] 0.013301 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LCC A 1 101 3 LCC LCC . D 3 LCG A 1 102 4 LCG LCG . E 4 GAO A 1 103 14 GAO ANG . F 5 GP3 A 1 104 101 GP3 GP3 . G 6 LKC A 1 105 1 LKC LCC . H 2 LCC A 1 106 2 LCC LCC . I 7 SO4 A 1 107 1 SO4 SO4 . J 6 LKC B 1 101 1 LKC LCC . K 2 LCC B 1 102 2 LCC LCC . L 2 LCC B 1 103 3 LCC LCC . M 3 LCG B 1 104 4 LCG LCG . N 4 GAO B 1 105 14 GAO ANG . O 5 GP3 B 1 106 101 GP3 GP3 . P 7 SO4 B 1 107 2 SO4 SO4 . Q 8 HOH A 1 201 101 HOH HOH . Q 8 HOH A 2 202 104 HOH HOH . Q 8 HOH A 3 203 64 HOH HOH . Q 8 HOH A 4 204 56 HOH HOH . Q 8 HOH A 5 205 50 HOH HOH . Q 8 HOH A 6 206 38 HOH HOH . Q 8 HOH A 7 207 80 HOH HOH . Q 8 HOH A 8 208 55 HOH HOH . Q 8 HOH A 9 209 84 HOH HOH . Q 8 HOH A 10 210 13 HOH HOH . Q 8 HOH A 11 211 36 HOH HOH . Q 8 HOH A 12 212 53 HOH HOH . Q 8 HOH A 13 213 44 HOH HOH . Q 8 HOH A 14 214 71 HOH HOH . Q 8 HOH A 15 215 76 HOH HOH . Q 8 HOH A 16 216 94 HOH HOH . Q 8 HOH A 17 217 59 HOH HOH . Q 8 HOH A 18 218 60 HOH HOH . Q 8 HOH A 19 219 85 HOH HOH . Q 8 HOH A 20 220 82 HOH HOH . Q 8 HOH A 21 221 29 HOH HOH . Q 8 HOH A 22 222 47 HOH HOH . Q 8 HOH A 23 223 105 HOH HOH . Q 8 HOH A 24 224 15 HOH HOH . Q 8 HOH A 25 225 63 HOH HOH . Q 8 HOH A 26 226 92 HOH HOH . Q 8 HOH A 27 227 14 HOH HOH . Q 8 HOH A 28 228 93 HOH HOH . Q 8 HOH A 29 229 28 HOH HOH . Q 8 HOH A 30 230 91 HOH HOH . Q 8 HOH A 31 231 54 HOH HOH . Q 8 HOH A 32 232 61 HOH HOH . Q 8 HOH A 33 233 41 HOH HOH . Q 8 HOH A 34 234 65 HOH HOH . Q 8 HOH A 35 235 96 HOH HOH . Q 8 HOH A 36 236 107 HOH HOH . Q 8 HOH A 37 237 16 HOH HOH . Q 8 HOH A 38 238 57 HOH HOH . Q 8 HOH A 39 239 97 HOH HOH . Q 8 HOH A 40 240 69 HOH HOH . Q 8 HOH A 41 241 45 HOH HOH . Q 8 HOH A 42 242 30 HOH HOH . Q 8 HOH A 43 243 46 HOH HOH . Q 8 HOH A 44 244 78 HOH HOH . Q 8 HOH A 45 245 52 HOH HOH . Q 8 HOH A 46 246 100 HOH HOH . Q 8 HOH A 47 247 11 HOH HOH . Q 8 HOH A 48 248 48 HOH HOH . Q 8 HOH A 49 249 83 HOH HOH . Q 8 HOH A 50 250 35 HOH HOH . Q 8 HOH A 51 251 40 HOH HOH . Q 8 HOH A 52 252 34 HOH HOH . Q 8 HOH A 53 253 37 HOH HOH . Q 8 HOH A 54 254 43 HOH HOH . Q 8 HOH A 55 255 33 HOH HOH . Q 8 HOH A 56 256 99 HOH HOH . Q 8 HOH A 57 257 77 HOH HOH . Q 8 HOH A 58 258 17 HOH HOH . Q 8 HOH A 59 259 49 HOH HOH . Q 8 HOH A 60 260 87 HOH HOH . Q 8 HOH A 61 261 90 HOH HOH . Q 8 HOH A 62 262 98 HOH HOH . Q 8 HOH A 63 263 51 HOH HOH . Q 8 HOH A 64 264 42 HOH HOH . R 8 HOH B 1 201 20 HOH HOH . R 8 HOH B 2 202 4 HOH HOH . R 8 HOH B 3 203 32 HOH HOH . R 8 HOH B 4 204 106 HOH HOH . R 8 HOH B 5 205 75 HOH HOH . R 8 HOH B 6 206 66 HOH HOH . R 8 HOH B 7 207 67 HOH HOH . R 8 HOH B 8 208 24 HOH HOH . R 8 HOH B 9 209 25 HOH HOH . R 8 HOH B 10 210 81 HOH HOH . R 8 HOH B 11 211 73 HOH HOH . R 8 HOH B 12 212 102 HOH HOH . R 8 HOH B 13 213 31 HOH HOH . R 8 HOH B 14 214 58 HOH HOH . R 8 HOH B 15 215 86 HOH HOH . R 8 HOH B 16 216 7 HOH HOH . R 8 HOH B 17 217 79 HOH HOH . R 8 HOH B 18 218 27 HOH HOH . R 8 HOH B 19 219 5 HOH HOH . R 8 HOH B 20 220 74 HOH HOH . R 8 HOH B 21 221 72 HOH HOH . R 8 HOH B 22 222 26 HOH HOH . R 8 HOH B 23 223 19 HOH HOH . R 8 HOH B 24 224 6 HOH HOH . R 8 HOH B 25 225 21 HOH HOH . R 8 HOH B 26 226 8 HOH HOH . R 8 HOH B 27 227 62 HOH HOH . R 8 HOH B 28 228 10 HOH HOH . R 8 HOH B 29 229 3 HOH HOH . R 8 HOH B 30 230 2 HOH HOH . R 8 HOH B 31 231 39 HOH HOH . R 8 HOH B 32 232 22 HOH HOH . R 8 HOH B 33 233 18 HOH HOH . R 8 HOH B 34 234 95 HOH HOH . R 8 HOH B 35 235 12 HOH HOH . R 8 HOH B 36 236 68 HOH HOH . R 8 HOH B 37 237 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P GAO . . . N 4 34.054 -14.275 4.457 1 21.91 0 P GAO 105 B 1 HETATM 2 O OP1 GAO . . . N 4 34.611 -15.51 3.774 1 27.43 0 OP1 GAO 105 B 1 HETATM 3 O OP2 GAO . . . N 4 34.006 -13.043 3.775 1 22.3 0 OP2 GAO 105 B 1 HETATM 4 O O5' GAO . . . N 4 32.633 -14.614 5.115 1 20.39 0 O5' GAO 105 B 1 HETATM 5 C C5' GAO . . . N 4 31.413 -14.481 4.431 1 18.71 0 C5' GAO 105 B 1 HETATM 6 C C4' GAO . . . N 4 30.271 -14.461 5.418 1 18.21 0 C4' GAO 105 B 1 HETATM 7 O O4' GAO . . . N 4 30.475 -13.34 6.256 1 16.67 0 O4' GAO 105 B 1 HETATM 8 C C3' GAO . . . N 4 28.918 -14.323 4.711 1 18.16 0 C3' GAO 105 B 1 HETATM 9 O O3' GAO . . . N 4 27.999 -15.22 5.342 1 18.77 0 O3' GAO 105 B 1 HETATM 10 C C2' GAO . . . N 4 28.581 -12.912 4.931 1 17.09 0 C2' GAO 105 B 1 HETATM 11 O O2' GAO . . . N 4 29.213 -12.13 3.882 1 17.8 0 O2' GAO 105 B 1 HETATM 12 C C1' GAO . . . N 4 29.252 -12.586 6.286 1 16.07 0 C1' GAO 105 B 1 HETATM 13 N N9 GAO . . . N 4 29.555 -11.167 6.343 1 14.76 0 N9 GAO 105 B 1 HETATM 14 C C8 GAO . . . N 4 30.653 -10.517 6.006 1 13.16 0 C8 GAO 105 B 1 HETATM 15 N N7 GAO . . . N 4 30.517 -9.248 6.165 1 13.82 0 N7 GAO 105 B 1 HETATM 16 C C5 GAO . . . N 4 29.259 -9.004 6.593 1 12.73 0 C5 GAO 105 B 1 HETATM 17 C C6 GAO . . . N 4 28.59 -7.835 6.887 1 11.21 0 C6 GAO 105 B 1 HETATM 18 O O6 GAO . . . N 4 28.994 -6.61 6.811 1 12.51 0 O6 GAO 105 B 1 HETATM 19 N N1 GAO . . . N 4 27.312 -8.048 7.306 1 10.99 0 N1 GAO 105 B 1 HETATM 20 C C2 GAO . . . N 4 26.736 -9.261 7.411 1 11.11 0 C2 GAO 105 B 1 HETATM 21 N N2 GAO . . . N 4 25.451 -9.315 7.804 1 12.34 0 N2 GAO 105 B 1 HETATM 22 N N3 GAO . . . N 4 27.389 -10.394 7.152 1 11.6 0 N3 GAO 105 B 1 HETATM 23 C C4 GAO . . . N 4 28.68 -10.208 6.726 1 13.24 0 C4 GAO 105 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #