data_7LNG # _model_server_result.job_id i6eNWmBRiV3b8MariXxFvg _model_server_result.datetime_utc '2024-11-08 18:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lng # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":103}' # _entry.id 7LNG # _exptl.entry_id 7LNG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 788.406 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "DIGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7LNG _cell.length_a 45.165 _cell.length_b 45.165 _cell.length_c 82.831 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNG _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A P A 5 A A 5 1_555 D O3' LCG . A LCG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.646 ? covale ? covale2 A O3' C 13 A C 13 1_555 E P TG . A TG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.634 ? covale ? covale3 C O3' LCC . A LCC 101 1_555 D P LCG . A LCG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale4 C P LCC . A LCC 101 1_555 K O3' LCC . B LCC 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? covale ? covale5 F O3' LKC . A LKC 104 1_555 G P LCC . A LCC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale6 G O3' LCC . A LCC 105 1_555 H P LCC . A LCC 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.65 ? covale ? covale7 H O3' LCC . A LCC 106 1_555 M P LCG . B LCG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.684 ? covale ? covale8 B P A 5 B A 5 1_555 M O3' LCG . B LCG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale9 B O3' C 13 B C 13 1_555 N P TG . B TG 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale10 J O3' LKC . B LKC 101 1_555 K P LCC . B LCC 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.64 ? hydrog WATSON-CRICK hydrog1 A N1 A 5 A A 5 1_555 B N3 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 A 5 A A 5 1_555 B O4 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 C 6 A C 6 1_555 B N1 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 C 6 A C 6 1_555 B O6 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 C 6 A C 6 1_555 B N2 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 U 7 A U 7 1_555 B N1 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 U 7 A U 7 1_555 B N6 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 U 8 A U 8 1_555 B N1 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 U 8 A U 8 1_555 B N6 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 A 9 A A 9 1_555 B N3 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 A 9 A A 9 1_555 B O4 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 A 10 A A 10 1_555 B N3 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 A 10 A A 10 1_555 B O4 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 G 11 A G 11 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 G 11 A G 11 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 G 11 A G 11 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 U 12 A U 12 1_555 B N1 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 U 12 A U 12 1_555 B N6 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C20 H27 N10 O18 P3' _chem_comp.formula_weight 788.406 _chem_comp.id GP3 _chem_comp.mon_nstd_flag . _chem_comp.name "DIGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9A C8A GP3 sing 116 n y N9A C4A GP3 sing 117 n y N9A C1D GP3 sing 118 n n C8A N7A GP3 doub 119 n y C8A H8A GP3 sing 120 n n N7A C5A GP3 sing 121 n y C5A C6A GP3 sing 122 n n C5A C4A GP3 doub 123 n y C6A O6A GP3 doub 124 n n C6A N1A GP3 sing 125 n n N1A C2A GP3 sing 126 n n N1A H1A GP3 sing 127 n n C2A N2A GP3 sing 128 n n C2A N3A GP3 doub 129 n n N2A H21A GP3 sing 130 n n N2A H22A GP3 sing 131 n n N3A C4A GP3 sing 132 n n O5D C5D GP3 sing 133 n n O5D PA GP3 sing 134 n n C5D C4D GP3 sing 135 n n C5D H51A GP3 sing 136 n n C5D H52A GP3 sing 137 n n C4D O4D GP3 sing 138 n n C4D C3D GP3 sing 139 n n C4D H4D GP3 sing 140 n n O4D C1D GP3 sing 141 n n C3D O3D GP3 sing 142 n n C3D C2D GP3 sing 143 n n C3D H3D GP3 sing 144 n n O3D HO3A GP3 sing 145 n n C2D O2D GP3 sing 146 n n C2D C1D GP3 sing 147 n n C2D H2D GP3 sing 148 n n O2D HO2A GP3 sing 149 n n C1D H1D GP3 sing 150 n n PA O1A GP3 doub 151 n n PA O2A GP3 sing 152 n n PA O3A GP3 sing 153 n n O2A HOA2 GP3 sing 154 n n O3A PB GP3 sing 155 n n PB O1B GP3 doub 156 n n PB O2B GP3 sing 157 n n PB O3B GP3 sing 158 n n O2B HOB2 GP3 sing 159 n n O3B PG GP3 sing 160 n n PG O1G GP3 doub 161 n n PG O2G GP3 sing 162 n n PG O5E GP3 sing 163 n n O2G HOG2 GP3 sing 164 n n O5E C5E GP3 sing 165 n n C5E C4E GP3 sing 166 n n C5E H51B GP3 sing 167 n n C5E H52B GP3 sing 168 n n C4E O4E GP3 sing 169 n n C4E C3E GP3 sing 170 n n C4E H4E GP3 sing 171 n n O4E C1E GP3 sing 172 n n C3E O3E GP3 sing 173 n n C3E C2E GP3 sing 174 n n C3E H3E GP3 sing 175 n n O3E HO3B GP3 sing 176 n n C2E O2E GP3 sing 177 n n C2E C1E GP3 sing 178 n n C2E H2E GP3 sing 179 n n O2E HO2B GP3 sing 180 n n C1E N9B GP3 sing 181 n n C1E H1E GP3 sing 182 n n N9B C8B GP3 sing 183 n y N9B C4B GP3 sing 184 n y C8B N7B GP3 doub 185 n y C8B H8B GP3 sing 186 n n N7B C5B GP3 sing 187 n y C5B C6B GP3 sing 188 n n C5B C4B GP3 doub 189 n y C6B O6B GP3 doub 190 n n C6B N1B GP3 sing 191 n n N1B C2B GP3 sing 192 n n N1B H1B GP3 sing 193 n n C2B N2B GP3 sing 194 n n C2B N3B GP3 doub 195 n n N2B H21B GP3 sing 196 n n N2B H22B GP3 sing 197 n n N3B C4B GP3 sing 198 n n # _atom_sites.entry_id 7LNG _atom_sites.fract_transf_matrix[1][1] 0.022141 _atom_sites.fract_transf_matrix[1][2] 0.012783 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LCC A 1 101 3 LCC LCC . D 3 LCG A 1 102 4 LCG LCG . E 4 TG A 1 103 14 TG TG . F 5 LKC A 1 104 1 LKC LCC . G 2 LCC A 1 105 2 LCC LCC . H 2 LCC A 1 106 3 LCC LCC . I 6 GP3 A 1 107 101 GP3 GP3 . J 5 LKC B 1 101 1 LKC LCC . K 2 LCC B 1 102 2 LCC LCC . L 6 GP3 B 1 103 101 GP3 GP3 . M 3 LCG B 1 104 4 LCG LCG . N 4 TG B 1 105 14 TG TG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9A GP3 . . . L 6 18.192 9.672 38.327 1 38.49 0 N9A GP3 103 B 1 HETATM 2 C C8A GP3 . . . L 6 17.719 8.478 38.781 1 40.32 0 C8A GP3 103 B 1 HETATM 3 N N7A GP3 . . . L 6 16.392 8.525 38.726 1 44.75 0 N7A GP3 103 B 1 HETATM 4 C C5A GP3 . . . L 6 16.076 9.717 38.221 1 42.98 0 C5A GP3 103 B 1 HETATM 5 C C6A GP3 . . . L 6 14.917 10.269 37.941 1 44.56 0 C6A GP3 103 B 1 HETATM 6 O O6A GP3 . . . L 6 13.869 9.666 38.095 1 47.08 0 O6A GP3 103 B 1 HETATM 7 N N1A GP3 . . . L 6 14.878 11.57 37.466 1 47.71 0 N1A GP3 103 B 1 HETATM 8 C C2A GP3 . . . L 6 16.062 12.274 37.249 1 36.02 0 C2A GP3 103 B 1 HETATM 9 N N2A GP3 . . . L 6 16.05 13.505 36.769 1 32.48 0 N2A GP3 103 B 1 HETATM 10 N N3A GP3 . . . L 6 17.203 11.679 37.525 1 37.58 0 N3A GP3 103 B 1 HETATM 11 C C4A GP3 . . . L 6 17.183 10.425 38.002 1 37.41 0 C4A GP3 103 B 1 HETATM 12 O O5D GP3 . . . L 6 20.021 7.987 40.86 1 46.17 0 O5D GP3 103 B 1 HETATM 13 C C5D GP3 . . . L 6 21.394 8.421 40.691 1 49.02 0 C5D GP3 103 B 1 HETATM 14 C C4D GP3 . . . L 6 21.33 9.523 39.664 1 44.19 0 C4D GP3 103 B 1 HETATM 15 O O4D GP3 . . . L 6 20.394 9.087 38.68 1 39.43 0 O4D GP3 103 B 1 HETATM 16 C C3D GP3 . . . L 6 20.668 10.752 40.266 1 45.5 0 C3D GP3 103 B 1 HETATM 17 O O3D GP3 . . . L 6 21.599 11.595 40.874 1 50.92 0 O3D GP3 103 B 1 HETATM 18 C C2D GP3 . . . L 6 20 11.417 39.065 1 47.73 0 C2D GP3 103 B 1 HETATM 19 O O2D GP3 . . . L 6 20.878 12.328 38.35 1 53.91 0 O2D GP3 103 B 1 HETATM 20 C C1D GP3 . . . L 6 19.635 10.209 38.208 1 42.69 0 C1D GP3 103 B 1 HETATM 21 P PA GP3 . . . L 6 19.566 6.716 41.864 1 48.19 0 PA GP3 103 B 1 HETATM 22 O O1A GP3 . . . L 6 19.481 5.462 41.098 1 53.32 0 O1A GP3 103 B 1 HETATM 23 O O2A GP3 . . . L 6 20.308 6.787 43.129 1 46.09 0 O2A GP3 103 B 1 HETATM 24 O O3A GP3 . . . L 6 18.02 7.308 42.164 1 57.08 0 O3A GP3 103 B 1 HETATM 25 P PB GP3 . . . L 6 16.843 6.765 43.161 1 63.76 0 PB GP3 103 B 1 HETATM 26 O O1B GP3 . . . L 6 15.622 6.781 42.281 1 63.09 0 O1B GP3 103 B 1 HETATM 27 O O2B GP3 . . . L 6 17.297 5.521 43.839 1 55.39 0 O2B GP3 103 B 1 HETATM 28 O O3B GP3 . . . L 6 16.504 7.792 44.418 1 53.02 0 O3B GP3 103 B 1 HETATM 29 P PG GP3 . . . L 6 17.538 8.913 44.968 1 61.28 0 PG GP3 103 B 1 HETATM 30 O O1G GP3 . . . L 6 16.8 9.711 45.958 1 58.86 0 O1G GP3 103 B 1 HETATM 31 O O2G GP3 . . . L 6 18.9 8.414 45.341 1 57.72 0 O2G GP3 103 B 1 HETATM 32 O O5E GP3 . . . L 6 17.758 9.776 43.579 1 52.05 0 O5E GP3 103 B 1 HETATM 33 C C5E GP3 . . . L 6 18.503 11.019 43.657 1 56.28 0 C5E GP3 103 B 1 HETATM 34 C C4E GP3 . . . L 6 18.02 12.045 42.606 1 49 0 C4E GP3 103 B 1 HETATM 35 O O4E GP3 . . . L 6 17.42 11.4 41.489 1 44.08 0 O4E GP3 103 B 1 HETATM 36 C C3E GP3 . . . L 6 16.884 12.908 43.139 1 51.24 0 C3E GP3 103 B 1 HETATM 37 O O3E GP3 . . . L 6 17.393 14.009 43.882 1 58.03 0 O3E GP3 103 B 1 HETATM 38 C C2E GP3 . . . L 6 16.316 13.444 41.907 1 47.44 0 C2E GP3 103 B 1 HETATM 39 O O2E GP3 . . . L 6 17.223 14.4 41.375 1 48.96 0 O2E GP3 103 B 1 HETATM 40 C C1E GP3 . . . L 6 16.33 12.236 41.028 1 41.58 0 C1E GP3 103 B 1 HETATM 41 N N9B GP3 . . . L 6 15.021 11.435 41.009 1 43.97 0 N9B GP3 103 B 1 HETATM 42 C C8B GP3 . . . L 6 14.892 10.141 41.252 1 43.83 0 C8B GP3 103 B 1 HETATM 43 N N7B GP3 . . . L 6 13.603 9.815 41.056 1 45.03 0 N7B GP3 103 B 1 HETATM 44 C C5B GP3 . . . L 6 12.913 10.887 40.721 1 39.93 0 C5B GP3 103 B 1 HETATM 45 C C6B GP3 . . . L 6 11.591 11.075 40.459 1 40.11 0 C6B GP3 103 B 1 HETATM 46 O O6B GP3 . . . L 6 10.715 10.181 40.451 1 37.16 0 O6B GP3 103 B 1 HETATM 47 N N1B GP3 . . . L 6 11.174 12.357 40.116 1 38.44 0 N1B GP3 103 B 1 HETATM 48 C C2B GP3 . . . L 6 12.109 13.396 40.064 1 38.22 0 C2B GP3 103 B 1 HETATM 49 N N2B GP3 . . . L 6 11.653 14.573 39.767 1 36.53 0 N2B GP3 103 B 1 HETATM 50 N N3B GP3 . . . L 6 13.419 13.166 40.33 1 43.85 0 N3B GP3 103 B 1 HETATM 51 C C4B GP3 . . . L 6 13.803 11.91 40.681 1 42.71 0 C4B GP3 103 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #