data_7LNN
#
_model_server_result.job_id            943t_kvTF5fbpSArGoT9Xg 
_model_server_result.datetime_utc      '2024-11-26 11:10:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lnn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    7LNN 
#
_exptl.entry_id    7LNN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7LNN 
_cell.length_a            122.336 
_cell.length_b            122.336 
_cell.length_c            287.267 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LNN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -61.168 105.946084 47.877833 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 17 A ASP 16 1_555 G MG MG . A MG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc2 F O1G PPK . A PPK 704 1_555 G MG MG . A MG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc3 F O4A PPK . A PPK 704 1_555 G MG MG . A MG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc4 G MG MG . A MG 705 1_555 L O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc5 G MG MG . A MG 705 1_555 L O HOH . A HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc6 G MG MG . A MG 705 1_555 L O HOH . A HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc7 B OD2 ASP 17 B ASP 16 1_555 K MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc8 J O2G PPK . B PPK 802 1_555 K MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc9 J O2A PPK . B PPK 802 1_555 K MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc10 K MG MG . B MG 803 1_555 M O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7LNN 
_atom_sites.fract_transf_matrix[1][1]    0.008174 
_atom_sites.fract_transf_matrix[1][2]    0.004719 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009439 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003481 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 701 701 EDO EDO . 
D 2 EDO A 1 702 1201 EDO EDO . 
E 2 EDO A 1 703 1301 EDO EDO . 
F 3 PPK A 1 704 1501 PPK PPK . 
G 4 MG A 1 705 2 MG MG . 
H 5 PO4 A 1 706 1 PO4 PO4 . 
I 2 EDO B 1 801 801 EDO EDO . 
J 3 PPK B 1 802 1001 PPK PPK . 
K 4 MG B 1 803 3 MG MG . 
L 6 HOH A 1 801 80 HOH HOH . 
L 6 HOH A 2 802 83 HOH HOH . 
L 6 HOH A 3 803 78 HOH HOH . 
L 6 HOH A 4 804 14 HOH HOH . 
L 6 HOH A 5 805 22 HOH HOH . 
L 6 HOH A 6 806 13 HOH HOH . 
L 6 HOH A 7 807 36 HOH HOH . 
L 6 HOH A 8 808 15 HOH HOH . 
L 6 HOH A 9 809 40 HOH HOH . 
L 6 HOH A 10 810 25 HOH HOH . 
L 6 HOH A 11 811 27 HOH HOH . 
L 6 HOH A 12 812 85 HOH HOH . 
L 6 HOH A 13 813 23 HOH HOH . 
L 6 HOH A 14 814 30 HOH HOH . 
L 6 HOH A 15 815 72 HOH HOH . 
L 6 HOH A 16 816 8 HOH HOH . 
L 6 HOH A 17 817 12 HOH HOH . 
L 6 HOH A 18 818 7 HOH HOH . 
L 6 HOH A 19 819 82 HOH HOH . 
L 6 HOH A 20 820 6 HOH HOH . 
L 6 HOH A 21 821 42 HOH HOH . 
L 6 HOH A 22 822 48 HOH HOH . 
L 6 HOH A 23 823 38 HOH HOH . 
L 6 HOH A 24 824 79 HOH HOH . 
L 6 HOH A 25 825 35 HOH HOH . 
L 6 HOH A 26 826 62 HOH HOH . 
L 6 HOH A 27 827 51 HOH HOH . 
L 6 HOH A 28 828 18 HOH HOH . 
L 6 HOH A 29 829 52 HOH HOH . 
L 6 HOH A 30 830 33 HOH HOH . 
L 6 HOH A 31 831 54 HOH HOH . 
L 6 HOH A 32 832 53 HOH HOH . 
L 6 HOH A 33 833 41 HOH HOH . 
L 6 HOH A 34 834 70 HOH HOH . 
L 6 HOH A 35 835 73 HOH HOH . 
L 6 HOH A 36 836 32 HOH HOH . 
L 6 HOH A 37 837 29 HOH HOH . 
L 6 HOH A 38 838 90 HOH HOH . 
L 6 HOH A 39 839 71 HOH HOH . 
L 6 HOH A 40 840 76 HOH HOH . 
L 6 HOH A 41 841 58 HOH HOH . 
L 6 HOH A 42 842 61 HOH HOH . 
L 6 HOH A 43 843 60 HOH HOH . 
L 6 HOH A 44 844 68 HOH HOH . 
L 6 HOH A 45 845 50 HOH HOH . 
L 6 HOH A 46 846 65 HOH HOH . 
M 6 HOH B 1 901 93 HOH HOH . 
M 6 HOH B 2 902 94 HOH HOH . 
M 6 HOH B 3 903 21 HOH HOH . 
M 6 HOH B 4 904 3 HOH HOH . 
M 6 HOH B 5 905 4 HOH HOH . 
M 6 HOH B 6 906 9 HOH HOH . 
M 6 HOH B 7 907 45 HOH HOH . 
M 6 HOH B 8 908 28 HOH HOH . 
M 6 HOH B 9 909 57 HOH HOH . 
M 6 HOH B 10 910 63 HOH HOH . 
M 6 HOH B 11 911 49 HOH HOH . 
M 6 HOH B 12 912 75 HOH HOH . 
M 6 HOH B 13 913 1 HOH HOH . 
M 6 HOH B 14 914 2 HOH HOH . 
M 6 HOH B 15 915 5 HOH HOH . 
M 6 HOH B 16 916 20 HOH HOH . 
M 6 HOH B 17 917 10 HOH HOH . 
M 6 HOH B 18 918 81 HOH HOH . 
M 6 HOH B 19 919 92 HOH HOH . 
M 6 HOH B 20 920 16 HOH HOH . 
M 6 HOH B 21 921 59 HOH HOH . 
M 6 HOH B 22 922 74 HOH HOH . 
M 6 HOH B 23 923 91 HOH HOH . 
M 6 HOH B 24 924 88 HOH HOH . 
M 6 HOH B 25 925 77 HOH HOH . 
M 6 HOH B 26 926 86 HOH HOH . 
M 6 HOH B 27 927 56 HOH HOH . 
M 6 HOH B 28 928 89 HOH HOH . 
M 6 HOH B 29 929 34 HOH HOH . 
M 6 HOH B 30 930 69 HOH HOH . 
M 6 HOH B 31 931 87 HOH HOH . 
M 6 HOH B 32 932 95 HOH HOH . 
M 6 HOH B 33 933 46 HOH HOH . 
M 6 HOH B 34 934 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 4.213 32.986 2.107 1 74.71 ? C1 EDO 701 A 1 
HETATM 2 O O1 EDO . . . C 2 5.018 32.446 3.16 1 81.03 ? O1 EDO 701 A 1 
HETATM 3 C C2 EDO . . . C 2 2.98 32.109 1.948 1 72.63 ? C2 EDO 701 A 1 
HETATM 4 O O2 EDO . . . C 2 2.354 32.374 0.69 1 73.3 ? O2 EDO 701 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#