data_7LNR # _model_server_result.job_id XvZ4UJNeBPWUroYJPlBa4A _model_server_result.datetime_utc '2024-11-16 07:18:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lnr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7LNR # _exptl.entry_id 7LNR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LNR _cell.length_a 124.083 _cell.length_b 124.083 _cell.length_c 124.083 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 102 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 102 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAN _struct_conn.ptnr2_label_comp_id NXL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NXL _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.413 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H13 N3 O6 S' _chem_comp.formula_weight 267.26 _chem_comp.id NXL _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'avibactam, bound form;NXL104, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAK CAO NXL sing 258 n n CAJ CAO NXL sing 259 n n CAJ N NXL sing 260 n n OAL SAR NXL sing 261 n n CAO CAH NXL sing 262 n n CAN N NXL sing 263 n n CAN OAC NXL doub 264 n n OAG SAR NXL doub 265 n n N CA NXL sing 266 n n SAR OAE NXL doub 267 n n SAR OAD NXL sing 268 n n O C NXL doub 269 n n CAH CB NXL sing 270 n n CA C NXL sing 271 n n CA CB NXL sing 272 n n C NAA NXL sing 273 n n NAK OAL NXL sing 274 n n CAN H1 NXL sing 275 n n CAJ H2 NXL sing 276 n n CAJ H3 NXL sing 277 n n CA H4 NXL sing 278 n n NAA H5 NXL sing 279 n n NAA H6 NXL sing 280 n n CB H7 NXL sing 281 n n CB H8 NXL sing 282 n n CAH H9 NXL sing 283 n n CAH H10 NXL sing 284 n n CAO H11 NXL sing 285 n n NAK H12 NXL sing 286 n n OAD H13 NXL sing 287 n n # _atom_sites.entry_id 7LNR _atom_sites.fract_transf_matrix[1][1] 0.008059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 401 401 NXL NXL . C 3 SO4 A 1 402 2 SO4 SO4 . D 3 SO4 A 1 403 4 SO4 SO4 . E 3 SO4 A 1 404 6 SO4 SO4 . F 4 MPD A 1 405 1 MPD MPD . G 5 HOH A 1 501 156 HOH HOH . G 5 HOH A 2 502 101 HOH HOH . G 5 HOH A 3 503 78 HOH HOH . G 5 HOH A 4 504 135 HOH HOH . G 5 HOH A 5 505 102 HOH HOH . G 5 HOH A 6 506 111 HOH HOH . G 5 HOH A 7 507 20 HOH HOH . G 5 HOH A 8 508 41 HOH HOH . G 5 HOH A 9 509 9 HOH HOH . G 5 HOH A 10 510 141 HOH HOH . G 5 HOH A 11 511 144 HOH HOH . G 5 HOH A 12 512 139 HOH HOH . G 5 HOH A 13 513 155 HOH HOH . G 5 HOH A 14 514 165 HOH HOH . G 5 HOH A 15 515 152 HOH HOH . G 5 HOH A 16 516 37 HOH HOH . G 5 HOH A 17 517 148 HOH HOH . G 5 HOH A 18 518 82 HOH HOH . G 5 HOH A 19 519 29 HOH HOH . G 5 HOH A 20 520 113 HOH HOH . G 5 HOH A 21 521 50 HOH HOH . G 5 HOH A 22 522 157 HOH HOH . G 5 HOH A 23 523 98 HOH HOH . G 5 HOH A 24 524 104 HOH HOH . G 5 HOH A 25 525 43 HOH HOH . G 5 HOH A 26 526 8 HOH HOH . G 5 HOH A 27 527 85 HOH HOH . G 5 HOH A 28 528 48 HOH HOH . G 5 HOH A 29 529 33 HOH HOH . G 5 HOH A 30 530 19 HOH HOH . G 5 HOH A 31 531 39 HOH HOH . G 5 HOH A 32 532 158 HOH HOH . G 5 HOH A 33 533 31 HOH HOH . G 5 HOH A 34 534 16 HOH HOH . G 5 HOH A 35 535 54 HOH HOH . G 5 HOH A 36 536 159 HOH HOH . G 5 HOH A 37 537 30 HOH HOH . G 5 HOH A 38 538 95 HOH HOH . G 5 HOH A 39 539 58 HOH HOH . G 5 HOH A 40 540 24 HOH HOH . G 5 HOH A 41 541 153 HOH HOH . G 5 HOH A 42 542 116 HOH HOH . G 5 HOH A 43 543 22 HOH HOH . G 5 HOH A 44 544 72 HOH HOH . G 5 HOH A 45 545 162 HOH HOH . G 5 HOH A 46 546 32 HOH HOH . G 5 HOH A 47 547 136 HOH HOH . G 5 HOH A 48 548 129 HOH HOH . G 5 HOH A 49 549 80 HOH HOH . G 5 HOH A 50 550 17 HOH HOH . G 5 HOH A 51 551 103 HOH HOH . G 5 HOH A 52 552 145 HOH HOH . G 5 HOH A 53 553 46 HOH HOH . G 5 HOH A 54 554 10 HOH HOH . G 5 HOH A 55 555 13 HOH HOH . G 5 HOH A 56 556 137 HOH HOH . G 5 HOH A 57 557 65 HOH HOH . G 5 HOH A 58 558 122 HOH HOH . G 5 HOH A 59 559 118 HOH HOH . G 5 HOH A 60 560 21 HOH HOH . G 5 HOH A 61 561 55 HOH HOH . G 5 HOH A 62 562 119 HOH HOH . G 5 HOH A 63 563 73 HOH HOH . G 5 HOH A 64 564 123 HOH HOH . G 5 HOH A 65 565 63 HOH HOH . G 5 HOH A 66 566 12 HOH HOH . G 5 HOH A 67 567 35 HOH HOH . G 5 HOH A 68 568 52 HOH HOH . G 5 HOH A 69 569 147 HOH HOH . G 5 HOH A 70 570 27 HOH HOH . G 5 HOH A 71 571 117 HOH HOH . G 5 HOH A 72 572 91 HOH HOH . G 5 HOH A 73 573 92 HOH HOH . G 5 HOH A 74 574 124 HOH HOH . G 5 HOH A 75 575 114 HOH HOH . G 5 HOH A 76 576 15 HOH HOH . G 5 HOH A 77 577 11 HOH HOH . G 5 HOH A 78 578 26 HOH HOH . G 5 HOH A 79 579 115 HOH HOH . G 5 HOH A 80 580 18 HOH HOH . G 5 HOH A 81 581 66 HOH HOH . G 5 HOH A 82 582 36 HOH HOH . G 5 HOH A 83 583 64 HOH HOH . G 5 HOH A 84 584 106 HOH HOH . G 5 HOH A 85 585 25 HOH HOH . G 5 HOH A 86 586 81 HOH HOH . G 5 HOH A 87 587 57 HOH HOH . G 5 HOH A 88 588 151 HOH HOH . G 5 HOH A 89 589 140 HOH HOH . G 5 HOH A 90 590 100 HOH HOH . G 5 HOH A 91 591 143 HOH HOH . G 5 HOH A 92 592 5 HOH HOH . G 5 HOH A 93 593 51 HOH HOH . G 5 HOH A 94 594 107 HOH HOH . G 5 HOH A 95 595 38 HOH HOH . G 5 HOH A 96 596 14 HOH HOH . G 5 HOH A 97 597 67 HOH HOH . G 5 HOH A 98 598 126 HOH HOH . G 5 HOH A 99 599 120 HOH HOH . G 5 HOH A 100 600 45 HOH HOH . G 5 HOH A 101 601 146 HOH HOH . G 5 HOH A 102 602 110 HOH HOH . G 5 HOH A 103 603 90 HOH HOH . G 5 HOH A 104 604 94 HOH HOH . G 5 HOH A 105 605 7 HOH HOH . G 5 HOH A 106 606 44 HOH HOH . G 5 HOH A 107 607 60 HOH HOH . G 5 HOH A 108 608 4 HOH HOH . G 5 HOH A 109 609 154 HOH HOH . G 5 HOH A 110 610 131 HOH HOH . G 5 HOH A 111 611 70 HOH HOH . G 5 HOH A 112 612 142 HOH HOH . G 5 HOH A 113 613 47 HOH HOH . G 5 HOH A 114 614 34 HOH HOH . G 5 HOH A 115 615 23 HOH HOH . G 5 HOH A 116 616 61 HOH HOH . G 5 HOH A 117 617 138 HOH HOH . G 5 HOH A 118 618 160 HOH HOH . G 5 HOH A 119 619 97 HOH HOH . G 5 HOH A 120 620 3 HOH HOH . G 5 HOH A 121 621 42 HOH HOH . G 5 HOH A 122 622 28 HOH HOH . G 5 HOH A 123 623 83 HOH HOH . G 5 HOH A 124 624 166 HOH HOH . G 5 HOH A 125 625 40 HOH HOH . G 5 HOH A 126 626 130 HOH HOH . G 5 HOH A 127 627 105 HOH HOH . G 5 HOH A 128 628 62 HOH HOH . G 5 HOH A 129 629 163 HOH HOH . G 5 HOH A 130 630 134 HOH HOH . G 5 HOH A 131 631 84 HOH HOH . G 5 HOH A 132 632 128 HOH HOH . G 5 HOH A 133 633 149 HOH HOH . G 5 HOH A 134 634 108 HOH HOH . G 5 HOH A 135 635 132 HOH HOH . G 5 HOH A 136 636 150 HOH HOH . G 5 HOH A 137 637 53 HOH HOH . G 5 HOH A 138 638 79 HOH HOH . G 5 HOH A 139 639 75 HOH HOH . G 5 HOH A 140 640 76 HOH HOH . G 5 HOH A 141 641 87 HOH HOH . G 5 HOH A 142 642 86 HOH HOH . G 5 HOH A 143 643 59 HOH HOH . G 5 HOH A 144 644 164 HOH HOH . G 5 HOH A 145 645 56 HOH HOH . G 5 HOH A 146 646 93 HOH HOH . G 5 HOH A 147 647 89 HOH HOH . G 5 HOH A 148 648 133 HOH HOH . G 5 HOH A 149 649 127 HOH HOH . G 5 HOH A 150 650 6 HOH HOH . G 5 HOH A 151 651 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC NXL . . . B 2 16.178 23.6 -9.169 0.96 32.96 ? OAC NXL 401 A 1 HETATM 2 C CAN NXL . . . B 2 15.532 23.187 -8.217 0.64 33.7 ? CAN NXL 401 A 1 HETATM 3 N N NXL . A . B 2 15.641 23.699 -7.064 0.57 35.6 ? N NXL 401 A 1 HETATM 4 N N NXL . B . B 2 15.754 23.628 -7.059 0.43 35.68 ? N NXL 401 A 1 HETATM 5 C CAJ NXL . A . B 2 14.559 23.612 -6.094 0.57 35 ? CAJ NXL 401 A 1 HETATM 6 C CAJ NXL . B . B 2 16.693 24.714 -6.797 0.43 35.8 ? CAJ NXL 401 A 1 HETATM 7 C CA NXL . A . B 2 16.853 24.398 -6.616 0.57 36.12 ? CA NXL 401 A 1 HETATM 8 C CA NXL . B . B 2 15.104 23.07 -5.885 0.43 33.31 ? CA NXL 401 A 1 HETATM 9 C C NXL . A . B 2 17.539 23.827 -5.394 0.57 36.22 ? C NXL 401 A 1 HETATM 10 C C NXL . B . B 2 14.353 24.1 -5.088 0.43 34.24 ? C NXL 401 A 1 HETATM 11 O O NXL . A . B 2 17.328 22.684 -5.028 0.57 38.31 ? O NXL 401 A 1 HETATM 12 O O NXL . B . B 2 14.316 24.011 -3.874 0.43 37.62 ? O NXL 401 A 1 HETATM 13 N NAA NXL . A . B 2 18.405 24.594 -4.734 0.57 36.93 ? NAA NXL 401 A 1 HETATM 14 N NAA NXL . B . B 2 13.726 25.087 -5.731 0.43 34.87 ? NAA NXL 401 A 1 HETATM 15 C CB NXL . A . B 2 16.447 25.843 -6.355 0.57 35.36 ? CB NXL 401 A 1 HETATM 16 C CB NXL . B . B 2 16.198 22.405 -5.063 0.43 35.13 ? CB NXL 401 A 1 HETATM 17 C CAH NXL . A . B 2 15.269 25.921 -5.391 0.57 35.97 ? CAH NXL 401 A 1 HETATM 18 C CAH NXL . B . B 2 17.307 23.403 -4.73 0.43 35.22 ? CAH NXL 401 A 1 HETATM 19 C CAO NXL . A . B 2 14.088 25.036 -5.791 0.57 35.1 ? CAO NXL 401 A 1 HETATM 20 C CAO NXL . B . B 2 17.839 24.12 -5.972 0.43 37.28 ? CAO NXL 401 A 1 HETATM 21 N NAK NXL . A . B 2 13.284 25.615 -6.902 0.57 38.7 ? NAK NXL 401 A 1 HETATM 22 N NAK NXL . B . B 2 18.673 23.205 -6.785 0.43 33.58 ? NAK NXL 401 A 1 HETATM 23 O OAL NXL . A . B 2 13.932 25.726 -8.077 0.57 38.93 ? OAL NXL 401 A 1 HETATM 24 O OAL NXL . B . B 2 19.955 23.622 -6.686 0.43 40.38 ? OAL NXL 401 A 1 HETATM 25 S SAR NXL . A . B 2 13.376 26.671 -9.147 0.57 40.41 ? SAR NXL 401 A 1 HETATM 26 S SAR NXL . B . B 2 21.059 22.698 -6.144 0.43 38.39 ? SAR NXL 401 A 1 HETATM 27 O OAD NXL . A . B 2 13.073 28.128 -8.468 0.57 43.74 ? OAD NXL 401 A 1 HETATM 28 O OAD NXL . B . B 2 21.316 21.49 -7.213 0.43 39.84 ? OAD NXL 401 A 1 HETATM 29 O OAE NXL . A . B 2 12.158 26.107 -9.66 0.57 45.58 ? OAE NXL 401 A 1 HETATM 30 O OAE NXL . B . B 2 20.638 22.156 -4.885 0.43 40.2 ? OAE NXL 401 A 1 HETATM 31 O OAG NXL . A . B 2 14.292 26.836 -10.238 0.57 27.57 ? OAG NXL 401 A 1 HETATM 32 O OAG NXL . B . B 2 22.279 23.439 -5.967 0.43 41.38 ? OAG NXL 401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #