data_7LNT # _model_server_result.job_id h2d9gLPCSIZdLbfTCTff4Q _model_server_result.datetime_utc '2025-02-23 17:07:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 7LNT # _exptl.entry_id 7LNT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LNT _cell.length_a 40.698 _cell.length_b 74.662 _cell.length_c 170.686 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7LNT _atom_sites.fract_transf_matrix[1][1] 0.024571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 301 GOL GOL . D 3 WZT A 1 302 2 WZT WZT . E 4 ADP A 1 303 1 ADP ADP . F 2 GOL B 1 301 301 GOL GOL . G 3 WZT B 1 302 1 WZT WZT . H 4 ADP B 1 303 2 ADP ADP . I 5 HOH A 1 401 60 HOH HOH . I 5 HOH A 2 402 120 HOH HOH . I 5 HOH A 3 403 55 HOH HOH . I 5 HOH A 4 404 62 HOH HOH . I 5 HOH A 5 405 255 HOH HOH . I 5 HOH A 6 406 114 HOH HOH . I 5 HOH A 7 407 6 HOH HOH . I 5 HOH A 8 408 211 HOH HOH . I 5 HOH A 9 409 16 HOH HOH . I 5 HOH A 10 410 156 HOH HOH . I 5 HOH A 11 411 57 HOH HOH . I 5 HOH A 12 412 147 HOH HOH . I 5 HOH A 13 413 178 HOH HOH . I 5 HOH A 14 414 250 HOH HOH . I 5 HOH A 15 415 193 HOH HOH . I 5 HOH A 16 416 19 HOH HOH . I 5 HOH A 17 417 27 HOH HOH . I 5 HOH A 18 418 150 HOH HOH . I 5 HOH A 19 419 186 HOH HOH . I 5 HOH A 20 420 48 HOH HOH . I 5 HOH A 21 421 251 HOH HOH . I 5 HOH A 22 422 233 HOH HOH . I 5 HOH A 23 423 8 HOH HOH . I 5 HOH A 24 424 77 HOH HOH . I 5 HOH A 25 425 117 HOH HOH . I 5 HOH A 26 426 142 HOH HOH . I 5 HOH A 27 427 93 HOH HOH . I 5 HOH A 28 428 245 HOH HOH . I 5 HOH A 29 429 9 HOH HOH . I 5 HOH A 30 430 20 HOH HOH . I 5 HOH A 31 431 40 HOH HOH . I 5 HOH A 32 432 28 HOH HOH . I 5 HOH A 33 433 68 HOH HOH . I 5 HOH A 34 434 243 HOH HOH . I 5 HOH A 35 435 177 HOH HOH . I 5 HOH A 36 436 252 HOH HOH . I 5 HOH A 37 437 92 HOH HOH . I 5 HOH A 38 438 115 HOH HOH . I 5 HOH A 39 439 145 HOH HOH . I 5 HOH A 40 440 161 HOH HOH . I 5 HOH A 41 441 58 HOH HOH . I 5 HOH A 42 442 172 HOH HOH . I 5 HOH A 43 443 51 HOH HOH . I 5 HOH A 44 444 244 HOH HOH . I 5 HOH A 45 445 153 HOH HOH . I 5 HOH A 46 446 168 HOH HOH . I 5 HOH A 47 447 11 HOH HOH . I 5 HOH A 48 448 2 HOH HOH . I 5 HOH A 49 449 75 HOH HOH . I 5 HOH A 50 450 82 HOH HOH . I 5 HOH A 51 451 102 HOH HOH . I 5 HOH A 52 452 32 HOH HOH . I 5 HOH A 53 453 50 HOH HOH . I 5 HOH A 54 454 65 HOH HOH . I 5 HOH A 55 455 72 HOH HOH . I 5 HOH A 56 456 137 HOH HOH . I 5 HOH A 57 457 248 HOH HOH . I 5 HOH A 58 458 5 HOH HOH . I 5 HOH A 59 459 232 HOH HOH . I 5 HOH A 60 460 144 HOH HOH . I 5 HOH A 61 461 182 HOH HOH . I 5 HOH A 62 462 88 HOH HOH . I 5 HOH A 63 463 25 HOH HOH . I 5 HOH A 64 464 15 HOH HOH . I 5 HOH A 65 465 34 HOH HOH . I 5 HOH A 66 466 97 HOH HOH . I 5 HOH A 67 467 128 HOH HOH . I 5 HOH A 68 468 136 HOH HOH . I 5 HOH A 69 469 167 HOH HOH . I 5 HOH A 70 470 121 HOH HOH . I 5 HOH A 71 471 226 HOH HOH . I 5 HOH A 72 472 23 HOH HOH . I 5 HOH A 73 473 118 HOH HOH . I 5 HOH A 74 474 10 HOH HOH . I 5 HOH A 75 475 36 HOH HOH . I 5 HOH A 76 476 52 HOH HOH . I 5 HOH A 77 477 108 HOH HOH . I 5 HOH A 78 478 207 HOH HOH . I 5 HOH A 79 479 170 HOH HOH . I 5 HOH A 80 480 83 HOH HOH . I 5 HOH A 81 481 254 HOH HOH . I 5 HOH A 82 482 203 HOH HOH . I 5 HOH A 83 483 228 HOH HOH . I 5 HOH A 84 484 90 HOH HOH . I 5 HOH A 85 485 91 HOH HOH . I 5 HOH A 86 486 148 HOH HOH . I 5 HOH A 87 487 96 HOH HOH . I 5 HOH A 88 488 119 HOH HOH . I 5 HOH A 89 489 180 HOH HOH . I 5 HOH A 90 490 151 HOH HOH . I 5 HOH A 91 491 213 HOH HOH . I 5 HOH A 92 492 139 HOH HOH . I 5 HOH A 93 493 229 HOH HOH . I 5 HOH A 94 494 99 HOH HOH . I 5 HOH A 95 495 42 HOH HOH . I 5 HOH A 96 496 155 HOH HOH . I 5 HOH A 97 497 231 HOH HOH . I 5 HOH A 98 498 219 HOH HOH . I 5 HOH A 99 499 174 HOH HOH . I 5 HOH A 100 500 1 HOH HOH . I 5 HOH A 101 501 206 HOH HOH . I 5 HOH A 102 502 61 HOH HOH . I 5 HOH A 103 503 242 HOH HOH . I 5 HOH A 104 504 104 HOH HOH . I 5 HOH A 105 505 133 HOH HOH . I 5 HOH A 106 506 17 HOH HOH . I 5 HOH A 107 507 141 HOH HOH . I 5 HOH A 108 508 152 HOH HOH . I 5 HOH A 109 509 122 HOH HOH . I 5 HOH A 110 510 221 HOH HOH . I 5 HOH A 111 511 187 HOH HOH . I 5 HOH A 112 512 194 HOH HOH . I 5 HOH A 113 513 225 HOH HOH . I 5 HOH A 114 514 154 HOH HOH . I 5 HOH A 115 515 188 HOH HOH . I 5 HOH A 116 516 106 HOH HOH . I 5 HOH A 117 517 158 HOH HOH . I 5 HOH A 118 518 227 HOH HOH . I 5 HOH A 119 519 201 HOH HOH . I 5 HOH A 120 520 79 HOH HOH . J 5 HOH B 1 401 135 HOH HOH . J 5 HOH B 2 402 54 HOH HOH . J 5 HOH B 3 403 222 HOH HOH . J 5 HOH B 4 404 129 HOH HOH . J 5 HOH B 5 405 109 HOH HOH . J 5 HOH B 6 406 47 HOH HOH . J 5 HOH B 7 407 39 HOH HOH . J 5 HOH B 8 408 246 HOH HOH . J 5 HOH B 9 409 132 HOH HOH . J 5 HOH B 10 410 183 HOH HOH . J 5 HOH B 11 411 59 HOH HOH . J 5 HOH B 12 412 103 HOH HOH . J 5 HOH B 13 413 223 HOH HOH . J 5 HOH B 14 414 66 HOH HOH . J 5 HOH B 15 415 33 HOH HOH . J 5 HOH B 16 416 89 HOH HOH . J 5 HOH B 17 417 76 HOH HOH . J 5 HOH B 18 418 100 HOH HOH . J 5 HOH B 19 419 98 HOH HOH . J 5 HOH B 20 420 38 HOH HOH . J 5 HOH B 21 421 45 HOH HOH . J 5 HOH B 22 422 24 HOH HOH . J 5 HOH B 23 423 80 HOH HOH . J 5 HOH B 24 424 78 HOH HOH . J 5 HOH B 25 425 208 HOH HOH . J 5 HOH B 26 426 53 HOH HOH . J 5 HOH B 27 427 197 HOH HOH . J 5 HOH B 28 428 111 HOH HOH . J 5 HOH B 29 429 4 HOH HOH . J 5 HOH B 30 430 110 HOH HOH . J 5 HOH B 31 431 127 HOH HOH . J 5 HOH B 32 432 215 HOH HOH . J 5 HOH B 33 433 113 HOH HOH . J 5 HOH B 34 434 70 HOH HOH . J 5 HOH B 35 435 56 HOH HOH . J 5 HOH B 36 436 101 HOH HOH . J 5 HOH B 37 437 13 HOH HOH . J 5 HOH B 38 438 185 HOH HOH . J 5 HOH B 39 439 169 HOH HOH . J 5 HOH B 40 440 159 HOH HOH . J 5 HOH B 41 441 116 HOH HOH . J 5 HOH B 42 442 179 HOH HOH . J 5 HOH B 43 443 63 HOH HOH . J 5 HOH B 44 444 241 HOH HOH . J 5 HOH B 45 445 12 HOH HOH . J 5 HOH B 46 446 30 HOH HOH . J 5 HOH B 47 447 29 HOH HOH . J 5 HOH B 48 448 7 HOH HOH . J 5 HOH B 49 449 71 HOH HOH . J 5 HOH B 50 450 86 HOH HOH . J 5 HOH B 51 451 200 HOH HOH . J 5 HOH B 52 452 35 HOH HOH . J 5 HOH B 53 453 95 HOH HOH . J 5 HOH B 54 454 146 HOH HOH . J 5 HOH B 55 455 125 HOH HOH . J 5 HOH B 56 456 239 HOH HOH . J 5 HOH B 57 457 73 HOH HOH . J 5 HOH B 58 458 199 HOH HOH . J 5 HOH B 59 459 249 HOH HOH . J 5 HOH B 60 460 41 HOH HOH . J 5 HOH B 61 461 49 HOH HOH . J 5 HOH B 62 462 236 HOH HOH . J 5 HOH B 63 463 31 HOH HOH . J 5 HOH B 64 464 237 HOH HOH . J 5 HOH B 65 465 87 HOH HOH . J 5 HOH B 66 466 14 HOH HOH . J 5 HOH B 67 467 64 HOH HOH . J 5 HOH B 68 468 44 HOH HOH . J 5 HOH B 69 469 209 HOH HOH . J 5 HOH B 70 470 212 HOH HOH . J 5 HOH B 71 471 166 HOH HOH . J 5 HOH B 72 472 26 HOH HOH . J 5 HOH B 73 473 184 HOH HOH . J 5 HOH B 74 474 253 HOH HOH . J 5 HOH B 75 475 18 HOH HOH . J 5 HOH B 76 476 164 HOH HOH . J 5 HOH B 77 477 238 HOH HOH . J 5 HOH B 78 478 210 HOH HOH . J 5 HOH B 79 479 235 HOH HOH . J 5 HOH B 80 480 198 HOH HOH . J 5 HOH B 81 481 173 HOH HOH . J 5 HOH B 82 482 131 HOH HOH . J 5 HOH B 83 483 196 HOH HOH . J 5 HOH B 84 484 240 HOH HOH . J 5 HOH B 85 485 181 HOH HOH . J 5 HOH B 86 486 143 HOH HOH . J 5 HOH B 87 487 234 HOH HOH . J 5 HOH B 88 488 126 HOH HOH . J 5 HOH B 89 489 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 4 -15.841 -6.255 0.269 1 55.36 ? PB ADP 303 B 1 HETATM 2 O O1B ADP . . . H 4 -15.526 -5.091 -0.64 1 45.82 ? O1B ADP 303 B 1 HETATM 3 O O2B ADP . . . H 4 -17.23 -6.235 0.863 1 53.31 ? O2B ADP 303 B 1 HETATM 4 O O3B ADP . . . H 4 -14.757 -6.595 1.26 1 57.04 ? O3B ADP 303 B 1 HETATM 5 P PA ADP . . . H 4 -17.155 -7.93 -1.541 1 68.68 ? PA ADP 303 B 1 HETATM 6 O O1A ADP . . . H 4 -17.968 -6.679 -1.774 1 72.75 ? O1A ADP 303 B 1 HETATM 7 O O2A ADP . . . H 4 -17.772 -9.147 -0.894 1 63.15 ? O2A ADP 303 B 1 HETATM 8 O O3A ADP . . . H 4 -15.836 -7.527 -0.715 1 63.18 ? O3A ADP 303 B 1 HETATM 9 O O5' ADP . . . H 4 -16.534 -8.356 -2.96 1 65.16 ? O5' ADP 303 B 1 HETATM 10 C C5' ADP . . . H 4 -17.173 -7.907 -4.15 1 52.03 ? C5' ADP 303 B 1 HETATM 11 C C4' ADP . . . H 4 -16.908 -8.899 -5.27 1 53.74 ? C4' ADP 303 B 1 HETATM 12 O O4' ADP . . . H 4 -18.134 -9.2 -5.935 1 60.07 ? O4' ADP 303 B 1 HETATM 13 C C3' ADP . . . H 4 -15.954 -8.344 -6.315 1 49.92 ? C3' ADP 303 B 1 HETATM 14 O O3' ADP . . . H 4 -14.653 -8.916 -6.159 1 52.13 ? O3' ADP 303 B 1 HETATM 15 C C2' ADP . . . H 4 -16.554 -8.742 -7.648 1 59.64 ? C2' ADP 303 B 1 HETATM 16 O O2' ADP . . . H 4 -15.735 -9.738 -8.269 1 62.96 ? O2' ADP 303 B 1 HETATM 17 C C1' ADP . . . H 4 -17.927 -9.328 -7.343 1 57.52 ? C1' ADP 303 B 1 HETATM 18 N N9 ADP . . . H 4 -19.041 -8.641 -8.059 1 58.46 ? N9 ADP 303 B 1 HETATM 19 C C8 ADP . . . H 4 -20.234 -9.22 -8.295 1 53.32 ? C8 ADP 303 B 1 HETATM 20 N N7 ADP . . . H 4 -21.069 -8.392 -8.967 1 59.35 ? N7 ADP 303 B 1 HETATM 21 C C5 ADP . . . H 4 -20.407 -7.242 -9.18 1 53.33 ? C5 ADP 303 B 1 HETATM 22 C C6 ADP . . . H 4 -20.718 -5.95 -9.837 1 51.95 ? C6 ADP 303 B 1 HETATM 23 N N6 ADP . . . H 4 -21.928 -5.729 -10.406 1 50.08 ? N6 ADP 303 B 1 HETATM 24 N N1 ADP . . . H 4 -19.758 -5 -9.851 1 47.77 ? N1 ADP 303 B 1 HETATM 25 C C2 ADP . . . H 4 -18.555 -5.21 -9.289 1 48.74 ? C2 ADP 303 B 1 HETATM 26 N N3 ADP . . . H 4 -18.209 -6.356 -8.677 1 52.06 ? N3 ADP 303 B 1 HETATM 27 C C4 ADP . . . H 4 -19.067 -7.405 -8.589 1 54.76 ? C4 ADP 303 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #