data_7LNU # _model_server_result.job_id 1iX5mnufySc2Zb5O0Zlemw _model_server_result.datetime_utc '2025-02-23 11:38:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7LNU # _exptl.entry_id 7LNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.112 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Isopentenyl phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LNU _cell.length_a 40.892 _cell.length_b 74.503 _cell.length_c 171.691 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C5 H11 O4 P' _chem_comp.formula_weight 166.112 _chem_comp.id IP8 _chem_comp.mon_nstd_flag . _chem_comp.name 'Isopentenyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-methylbut-3-en-1-yl dihydrogen phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O P1 IP8 doub 266 n n C1 C2 IP8 sing 267 n n C1 O1 IP8 sing 268 n n C1 H1 IP8 sing 269 n n C1 H1A IP8 sing 270 n n P1 O1 IP8 sing 271 n n O3 P1 IP8 sing 272 n n P1 O2 IP8 sing 273 n n C3 C2 IP8 sing 274 n n C2 H2 IP8 sing 275 n n C2 H2A IP8 sing 276 n n O2 HO2 IP8 sing 277 n n C5 C3 IP8 doub 278 n n C3 C4 IP8 sing 279 n n O3 HO3 IP8 sing 280 n n C4 H4 IP8 sing 281 n n C4 H4A IP8 sing 282 n n C4 H4B IP8 sing 283 n n C5 H5 IP8 sing 284 n n C5 H5A IP8 sing 285 n n # _atom_sites.entry_id 7LNU _atom_sites.fract_transf_matrix[1][1] 0.024455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IP8 A 1 301 300 IP8 IP8 . D 3 ADP A 1 302 400 ADP ADP . E 4 ATP A 1 303 401 ATP ATP . F 5 IPE A 1 304 301 IPE IPE . G 2 IP8 B 1 301 300 IP8 IP8 . H 3 ADP B 1 302 400 ADP ADP . I 6 HOH A 1 401 162 HOH HOH . I 6 HOH A 2 402 17 HOH HOH . I 6 HOH A 3 403 161 HOH HOH . I 6 HOH A 4 404 18 HOH HOH . I 6 HOH A 5 405 106 HOH HOH . I 6 HOH A 6 406 48 HOH HOH . I 6 HOH A 7 407 133 HOH HOH . I 6 HOH A 8 408 22 HOH HOH . I 6 HOH A 9 409 61 HOH HOH . I 6 HOH A 10 410 88 HOH HOH . I 6 HOH A 11 411 9 HOH HOH . I 6 HOH A 12 412 103 HOH HOH . I 6 HOH A 13 413 163 HOH HOH . I 6 HOH A 14 414 37 HOH HOH . I 6 HOH A 15 415 176 HOH HOH . I 6 HOH A 16 416 5 HOH HOH . I 6 HOH A 17 417 36 HOH HOH . I 6 HOH A 18 418 39 HOH HOH . I 6 HOH A 19 419 64 HOH HOH . I 6 HOH A 20 420 63 HOH HOH . I 6 HOH A 21 421 15 HOH HOH . I 6 HOH A 22 422 136 HOH HOH . I 6 HOH A 23 423 92 HOH HOH . I 6 HOH A 24 424 119 HOH HOH . I 6 HOH A 25 425 29 HOH HOH . I 6 HOH A 26 426 32 HOH HOH . I 6 HOH A 27 427 110 HOH HOH . I 6 HOH A 28 428 31 HOH HOH . I 6 HOH A 29 429 14 HOH HOH . I 6 HOH A 30 430 124 HOH HOH . I 6 HOH A 31 431 65 HOH HOH . I 6 HOH A 32 432 175 HOH HOH . I 6 HOH A 33 433 45 HOH HOH . I 6 HOH A 34 434 151 HOH HOH . I 6 HOH A 35 435 4 HOH HOH . I 6 HOH A 36 436 105 HOH HOH . I 6 HOH A 37 437 98 HOH HOH . I 6 HOH A 38 438 158 HOH HOH . I 6 HOH A 39 439 20 HOH HOH . I 6 HOH A 40 440 94 HOH HOH . I 6 HOH A 41 441 52 HOH HOH . I 6 HOH A 42 442 51 HOH HOH . I 6 HOH A 43 443 56 HOH HOH . I 6 HOH A 44 444 107 HOH HOH . I 6 HOH A 45 445 99 HOH HOH . I 6 HOH A 46 446 40 HOH HOH . I 6 HOH A 47 447 35 HOH HOH . I 6 HOH A 48 448 170 HOH HOH . I 6 HOH A 49 449 66 HOH HOH . I 6 HOH A 50 450 72 HOH HOH . I 6 HOH A 51 451 75 HOH HOH . I 6 HOH A 52 452 1 HOH HOH . I 6 HOH A 53 453 69 HOH HOH . I 6 HOH A 54 454 168 HOH HOH . I 6 HOH A 55 455 12 HOH HOH . I 6 HOH A 56 456 148 HOH HOH . I 6 HOH A 57 457 73 HOH HOH . I 6 HOH A 58 458 132 HOH HOH . I 6 HOH A 59 459 2 HOH HOH . I 6 HOH A 60 460 139 HOH HOH . I 6 HOH A 61 461 169 HOH HOH . I 6 HOH A 62 462 144 HOH HOH . I 6 HOH A 63 463 149 HOH HOH . I 6 HOH A 64 464 174 HOH HOH . I 6 HOH A 65 465 173 HOH HOH . I 6 HOH A 66 466 129 HOH HOH . I 6 HOH A 67 467 118 HOH HOH . I 6 HOH A 68 468 79 HOH HOH . I 6 HOH A 69 469 108 HOH HOH . I 6 HOH A 70 470 121 HOH HOH . I 6 HOH A 71 471 147 HOH HOH . J 6 HOH B 1 401 23 HOH HOH . J 6 HOH B 2 402 68 HOH HOH . J 6 HOH B 3 403 166 HOH HOH . J 6 HOH B 4 404 49 HOH HOH . J 6 HOH B 5 405 77 HOH HOH . J 6 HOH B 6 406 153 HOH HOH . J 6 HOH B 7 407 130 HOH HOH . J 6 HOH B 8 408 16 HOH HOH . J 6 HOH B 9 409 67 HOH HOH . J 6 HOH B 10 410 7 HOH HOH . J 6 HOH B 11 411 57 HOH HOH . J 6 HOH B 12 412 113 HOH HOH . J 6 HOH B 13 413 178 HOH HOH . J 6 HOH B 14 414 26 HOH HOH . J 6 HOH B 15 415 146 HOH HOH . J 6 HOH B 16 416 55 HOH HOH . J 6 HOH B 17 417 43 HOH HOH . J 6 HOH B 18 418 47 HOH HOH . J 6 HOH B 19 419 42 HOH HOH . J 6 HOH B 20 420 58 HOH HOH . J 6 HOH B 21 421 6 HOH HOH . J 6 HOH B 22 422 114 HOH HOH . J 6 HOH B 23 423 10 HOH HOH . J 6 HOH B 24 424 83 HOH HOH . J 6 HOH B 25 425 71 HOH HOH . J 6 HOH B 26 426 11 HOH HOH . J 6 HOH B 27 427 33 HOH HOH . J 6 HOH B 28 428 41 HOH HOH . J 6 HOH B 29 429 70 HOH HOH . J 6 HOH B 30 430 54 HOH HOH . J 6 HOH B 31 431 172 HOH HOH . J 6 HOH B 32 432 95 HOH HOH . J 6 HOH B 33 433 21 HOH HOH . J 6 HOH B 34 434 3 HOH HOH . J 6 HOH B 35 435 50 HOH HOH . J 6 HOH B 36 436 112 HOH HOH . J 6 HOH B 37 437 13 HOH HOH . J 6 HOH B 38 438 97 HOH HOH . J 6 HOH B 39 439 27 HOH HOH . J 6 HOH B 40 440 62 HOH HOH . J 6 HOH B 41 441 116 HOH HOH . J 6 HOH B 42 442 87 HOH HOH . J 6 HOH B 43 443 85 HOH HOH . J 6 HOH B 44 444 80 HOH HOH . J 6 HOH B 45 445 90 HOH HOH . J 6 HOH B 46 446 59 HOH HOH . J 6 HOH B 47 447 86 HOH HOH . J 6 HOH B 48 448 8 HOH HOH . J 6 HOH B 49 449 111 HOH HOH . J 6 HOH B 50 450 28 HOH HOH . J 6 HOH B 51 451 19 HOH HOH . J 6 HOH B 52 452 145 HOH HOH . J 6 HOH B 53 453 24 HOH HOH . J 6 HOH B 54 454 53 HOH HOH . J 6 HOH B 55 455 30 HOH HOH . J 6 HOH B 56 456 150 HOH HOH . J 6 HOH B 57 457 78 HOH HOH . J 6 HOH B 58 458 138 HOH HOH . J 6 HOH B 59 459 164 HOH HOH . J 6 HOH B 60 460 131 HOH HOH . J 6 HOH B 61 461 89 HOH HOH . J 6 HOH B 62 462 135 HOH HOH . J 6 HOH B 63 463 46 HOH HOH . J 6 HOH B 64 464 160 HOH HOH . J 6 HOH B 65 465 34 HOH HOH . J 6 HOH B 66 466 137 HOH HOH . J 6 HOH B 67 467 74 HOH HOH . J 6 HOH B 68 468 101 HOH HOH . J 6 HOH B 69 469 91 HOH HOH . J 6 HOH B 70 470 76 HOH HOH . J 6 HOH B 71 471 142 HOH HOH . J 6 HOH B 72 472 143 HOH HOH . J 6 HOH B 73 473 25 HOH HOH . J 6 HOH B 74 474 115 HOH HOH . J 6 HOH B 75 475 140 HOH HOH . J 6 HOH B 76 476 177 HOH HOH . J 6 HOH B 77 477 84 HOH HOH . J 6 HOH B 78 478 102 HOH HOH . J 6 HOH B 79 479 81 HOH HOH . J 6 HOH B 80 480 127 HOH HOH . J 6 HOH B 81 481 154 HOH HOH . J 6 HOH B 82 482 159 HOH HOH . J 6 HOH B 83 483 141 HOH HOH . J 6 HOH B 84 484 123 HOH HOH . J 6 HOH B 85 485 155 HOH HOH . J 6 HOH B 86 486 117 HOH HOH . J 6 HOH B 87 487 82 HOH HOH . J 6 HOH B 88 488 165 HOH HOH . J 6 HOH B 89 489 171 HOH HOH . J 6 HOH B 90 490 60 HOH HOH . J 6 HOH B 91 491 167 HOH HOH . J 6 HOH B 92 492 125 HOH HOH . J 6 HOH B 93 493 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O IP8 . . . G 2 -19.405 -8.418 4.741 1 29.64 ? O IP8 301 B 1 HETATM 2 C C1 IP8 . . . G 2 -18.754 -9.662 7.435 1 27.55 ? C1 IP8 301 B 1 HETATM 3 O O1 IP8 . . . G 2 -18.723 -8.245 7.141 1 20.14 ? O1 IP8 301 B 1 HETATM 4 P P1 IP8 . . . G 2 -18.368 -7.773 5.64 1 26.75 ? P1 IP8 301 B 1 HETATM 5 C C2 IP8 . . . G 2 -19.007 -9.868 8.905 1 24.87 ? C2 IP8 301 B 1 HETATM 6 O O2 IP8 . . . G 2 -18.461 -6.258 5.657 1 24.94 ? O2 IP8 301 B 1 HETATM 7 C C3 IP8 . . . G 2 -19.041 -11.309 9.328 1 22.67 ? C3 IP8 301 B 1 HETATM 8 O O3 IP8 . . . G 2 -16.961 -8.275 5.37 1 32.63 ? O3 IP8 301 B 1 HETATM 9 C C4 IP8 . . . G 2 -18.921 -12.312 8.221 1 24.64 ? C4 IP8 301 B 1 HETATM 10 C C5 IP8 . . . G 2 -19.176 -11.667 10.596 1 23.14 ? C5 IP8 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 10 #