data_7LNU # _model_server_result.job_id TgLu3RgoZkTuRK7uNZgJ7w _model_server_result.datetime_utc '2025-02-23 11:49:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7LNU # _exptl.entry_id 7LNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LNU _cell.length_a 40.892 _cell.length_b 74.503 _cell.length_c 171.691 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7LNU _atom_sites.fract_transf_matrix[1][1] 0.024455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IP8 A 1 301 300 IP8 IP8 . D 3 ADP A 1 302 400 ADP ADP . E 4 ATP A 1 303 401 ATP ATP . F 5 IPE A 1 304 301 IPE IPE . G 2 IP8 B 1 301 300 IP8 IP8 . H 3 ADP B 1 302 400 ADP ADP . I 6 HOH A 1 401 162 HOH HOH . I 6 HOH A 2 402 17 HOH HOH . I 6 HOH A 3 403 161 HOH HOH . I 6 HOH A 4 404 18 HOH HOH . I 6 HOH A 5 405 106 HOH HOH . I 6 HOH A 6 406 48 HOH HOH . I 6 HOH A 7 407 133 HOH HOH . I 6 HOH A 8 408 22 HOH HOH . I 6 HOH A 9 409 61 HOH HOH . I 6 HOH A 10 410 88 HOH HOH . I 6 HOH A 11 411 9 HOH HOH . I 6 HOH A 12 412 103 HOH HOH . I 6 HOH A 13 413 163 HOH HOH . I 6 HOH A 14 414 37 HOH HOH . I 6 HOH A 15 415 176 HOH HOH . I 6 HOH A 16 416 5 HOH HOH . I 6 HOH A 17 417 36 HOH HOH . I 6 HOH A 18 418 39 HOH HOH . I 6 HOH A 19 419 64 HOH HOH . I 6 HOH A 20 420 63 HOH HOH . I 6 HOH A 21 421 15 HOH HOH . I 6 HOH A 22 422 136 HOH HOH . I 6 HOH A 23 423 92 HOH HOH . I 6 HOH A 24 424 119 HOH HOH . I 6 HOH A 25 425 29 HOH HOH . I 6 HOH A 26 426 32 HOH HOH . I 6 HOH A 27 427 110 HOH HOH . I 6 HOH A 28 428 31 HOH HOH . I 6 HOH A 29 429 14 HOH HOH . I 6 HOH A 30 430 124 HOH HOH . I 6 HOH A 31 431 65 HOH HOH . I 6 HOH A 32 432 175 HOH HOH . I 6 HOH A 33 433 45 HOH HOH . I 6 HOH A 34 434 151 HOH HOH . I 6 HOH A 35 435 4 HOH HOH . I 6 HOH A 36 436 105 HOH HOH . I 6 HOH A 37 437 98 HOH HOH . I 6 HOH A 38 438 158 HOH HOH . I 6 HOH A 39 439 20 HOH HOH . I 6 HOH A 40 440 94 HOH HOH . I 6 HOH A 41 441 52 HOH HOH . I 6 HOH A 42 442 51 HOH HOH . I 6 HOH A 43 443 56 HOH HOH . I 6 HOH A 44 444 107 HOH HOH . I 6 HOH A 45 445 99 HOH HOH . I 6 HOH A 46 446 40 HOH HOH . I 6 HOH A 47 447 35 HOH HOH . I 6 HOH A 48 448 170 HOH HOH . I 6 HOH A 49 449 66 HOH HOH . I 6 HOH A 50 450 72 HOH HOH . I 6 HOH A 51 451 75 HOH HOH . I 6 HOH A 52 452 1 HOH HOH . I 6 HOH A 53 453 69 HOH HOH . I 6 HOH A 54 454 168 HOH HOH . I 6 HOH A 55 455 12 HOH HOH . I 6 HOH A 56 456 148 HOH HOH . I 6 HOH A 57 457 73 HOH HOH . I 6 HOH A 58 458 132 HOH HOH . I 6 HOH A 59 459 2 HOH HOH . I 6 HOH A 60 460 139 HOH HOH . I 6 HOH A 61 461 169 HOH HOH . I 6 HOH A 62 462 144 HOH HOH . I 6 HOH A 63 463 149 HOH HOH . I 6 HOH A 64 464 174 HOH HOH . I 6 HOH A 65 465 173 HOH HOH . I 6 HOH A 66 466 129 HOH HOH . I 6 HOH A 67 467 118 HOH HOH . I 6 HOH A 68 468 79 HOH HOH . I 6 HOH A 69 469 108 HOH HOH . I 6 HOH A 70 470 121 HOH HOH . I 6 HOH A 71 471 147 HOH HOH . J 6 HOH B 1 401 23 HOH HOH . J 6 HOH B 2 402 68 HOH HOH . J 6 HOH B 3 403 166 HOH HOH . J 6 HOH B 4 404 49 HOH HOH . J 6 HOH B 5 405 77 HOH HOH . J 6 HOH B 6 406 153 HOH HOH . J 6 HOH B 7 407 130 HOH HOH . J 6 HOH B 8 408 16 HOH HOH . J 6 HOH B 9 409 67 HOH HOH . J 6 HOH B 10 410 7 HOH HOH . J 6 HOH B 11 411 57 HOH HOH . J 6 HOH B 12 412 113 HOH HOH . J 6 HOH B 13 413 178 HOH HOH . J 6 HOH B 14 414 26 HOH HOH . J 6 HOH B 15 415 146 HOH HOH . J 6 HOH B 16 416 55 HOH HOH . J 6 HOH B 17 417 43 HOH HOH . J 6 HOH B 18 418 47 HOH HOH . J 6 HOH B 19 419 42 HOH HOH . J 6 HOH B 20 420 58 HOH HOH . J 6 HOH B 21 421 6 HOH HOH . J 6 HOH B 22 422 114 HOH HOH . J 6 HOH B 23 423 10 HOH HOH . J 6 HOH B 24 424 83 HOH HOH . J 6 HOH B 25 425 71 HOH HOH . J 6 HOH B 26 426 11 HOH HOH . J 6 HOH B 27 427 33 HOH HOH . J 6 HOH B 28 428 41 HOH HOH . J 6 HOH B 29 429 70 HOH HOH . J 6 HOH B 30 430 54 HOH HOH . J 6 HOH B 31 431 172 HOH HOH . J 6 HOH B 32 432 95 HOH HOH . J 6 HOH B 33 433 21 HOH HOH . J 6 HOH B 34 434 3 HOH HOH . J 6 HOH B 35 435 50 HOH HOH . J 6 HOH B 36 436 112 HOH HOH . J 6 HOH B 37 437 13 HOH HOH . J 6 HOH B 38 438 97 HOH HOH . J 6 HOH B 39 439 27 HOH HOH . J 6 HOH B 40 440 62 HOH HOH . J 6 HOH B 41 441 116 HOH HOH . J 6 HOH B 42 442 87 HOH HOH . J 6 HOH B 43 443 85 HOH HOH . J 6 HOH B 44 444 80 HOH HOH . J 6 HOH B 45 445 90 HOH HOH . J 6 HOH B 46 446 59 HOH HOH . J 6 HOH B 47 447 86 HOH HOH . J 6 HOH B 48 448 8 HOH HOH . J 6 HOH B 49 449 111 HOH HOH . J 6 HOH B 50 450 28 HOH HOH . J 6 HOH B 51 451 19 HOH HOH . J 6 HOH B 52 452 145 HOH HOH . J 6 HOH B 53 453 24 HOH HOH . J 6 HOH B 54 454 53 HOH HOH . J 6 HOH B 55 455 30 HOH HOH . J 6 HOH B 56 456 150 HOH HOH . J 6 HOH B 57 457 78 HOH HOH . J 6 HOH B 58 458 138 HOH HOH . J 6 HOH B 59 459 164 HOH HOH . J 6 HOH B 60 460 131 HOH HOH . J 6 HOH B 61 461 89 HOH HOH . J 6 HOH B 62 462 135 HOH HOH . J 6 HOH B 63 463 46 HOH HOH . J 6 HOH B 64 464 160 HOH HOH . J 6 HOH B 65 465 34 HOH HOH . J 6 HOH B 66 466 137 HOH HOH . J 6 HOH B 67 467 74 HOH HOH . J 6 HOH B 68 468 101 HOH HOH . J 6 HOH B 69 469 91 HOH HOH . J 6 HOH B 70 470 76 HOH HOH . J 6 HOH B 71 471 142 HOH HOH . J 6 HOH B 72 472 143 HOH HOH . J 6 HOH B 73 473 25 HOH HOH . J 6 HOH B 74 474 115 HOH HOH . J 6 HOH B 75 475 140 HOH HOH . J 6 HOH B 76 476 177 HOH HOH . J 6 HOH B 77 477 84 HOH HOH . J 6 HOH B 78 478 102 HOH HOH . J 6 HOH B 79 479 81 HOH HOH . J 6 HOH B 80 480 127 HOH HOH . J 6 HOH B 81 481 154 HOH HOH . J 6 HOH B 82 482 159 HOH HOH . J 6 HOH B 83 483 141 HOH HOH . J 6 HOH B 84 484 123 HOH HOH . J 6 HOH B 85 485 155 HOH HOH . J 6 HOH B 86 486 117 HOH HOH . J 6 HOH B 87 487 82 HOH HOH . J 6 HOH B 88 488 165 HOH HOH . J 6 HOH B 89 489 171 HOH HOH . J 6 HOH B 90 490 60 HOH HOH . J 6 HOH B 91 491 167 HOH HOH . J 6 HOH B 92 492 125 HOH HOH . J 6 HOH B 93 493 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . B . D 3 -2.479 -8.015 39.433 0.34 35.41 ? PB ADP 302 A 1 HETATM 2 O O1B ADP . B . D 3 -2.378 -7.866 37.935 0.34 35.75 ? O1B ADP 302 A 1 HETATM 3 O O2B ADP . B . D 3 -1.704 -9.183 39.993 0.34 35.65 ? O2B ADP 302 A 1 HETATM 4 O O3B ADP . B . D 3 -3.884 -7.89 39.973 0.34 35.79 ? O3B ADP 302 A 1 HETATM 5 P PA ADP . B . D 3 -1.505 -6.462 41.572 0.34 41.73 ? PA ADP 302 A 1 HETATM 6 O O1A ADP . B . D 3 -0.675 -5.215 41.759 0.34 40.89 ? O1A ADP 302 A 1 HETATM 7 O O2A ADP . B . D 3 -2.839 -6.587 42.269 0.34 40.02 ? O2A ADP 302 A 1 HETATM 8 O O3A ADP . B . D 3 -1.73 -6.703 39.994 0.34 39.05 ? O3A ADP 302 A 1 HETATM 9 O O5' ADP . B . D 3 -0.582 -7.699 42.032 0.34 43.54 ? O5' ADP 302 A 1 HETATM 10 C C5' ADP . B . D 3 -0.229 -7.829 43.407 0.34 45 ? C5' ADP 302 A 1 HETATM 11 C C4' ADP . B . D 3 1.283 -7.829 43.586 0.34 47.28 ? C4' ADP 302 A 1 HETATM 12 O O4' ADP . B . D 3 1.66 -6.794 44.498 0.34 51.14 ? O4' ADP 302 A 1 HETATM 13 C C3' ADP . B . D 3 1.792 -9.136 44.167 0.34 46.7 ? C3' ADP 302 A 1 HETATM 14 O O3' ADP . B . D 3 2.501 -9.873 43.17 0.34 45.6 ? O3' ADP 302 A 1 HETATM 15 C C2' ADP . B . D 3 2.736 -8.75 45.289 0.34 50.64 ? C2' ADP 302 A 1 HETATM 16 O O2' ADP . B . D 3 4.058 -9.212 45 0.34 52.14 ? O2' ADP 302 A 1 HETATM 17 C C1' ADP . B . D 3 2.717 -7.232 45.356 0.34 52.37 ? C1' ADP 302 A 1 HETATM 18 N N9 ADP . B . D 3 2.486 -6.752 46.747 0.34 54.52 ? N9 ADP 302 A 1 HETATM 19 C C8 ADP . B . D 3 3.15 -5.73 47.321 0.34 54.3 ? C8 ADP 302 A 1 HETATM 20 N N7 ADP . B . D 3 2.734 -5.522 48.595 0.34 55.63 ? N7 ADP 302 A 1 HETATM 21 C C5 ADP . B . D 3 1.779 -6.432 48.861 0.34 55.02 ? C5 ADP 302 A 1 HETATM 22 C C6 ADP . B . D 3 0.923 -6.765 50.024 0.34 55.64 ? C6 ADP 302 A 1 HETATM 23 N N6 ADP . B . D 3 1.01 -6.065 51.18 0.34 59.31 ? N6 ADP 302 A 1 HETATM 24 N N1 ADP . B . D 3 0.052 -7.789 49.893 0.34 53.11 ? N1 ADP 302 A 1 HETATM 25 C C2 ADP . B . D 3 -0.043 -8.491 48.749 0.34 53.55 ? C2 ADP 302 A 1 HETATM 26 N N3 ADP . B . D 3 0.701 -8.241 47.657 0.34 54.03 ? N3 ADP 302 A 1 HETATM 27 C C4 ADP . B . D 3 1.622 -7.246 47.644 0.34 54.77 ? C4 ADP 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #