data_7LNU # _model_server_result.job_id tdMFLGQe3HhGT-lnsI81GA _model_server_result.datetime_utc '2025-06-30 12:52:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 7LNU # _exptl.entry_id 7LNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.092 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LNU _cell.length_a 40.892 _cell.length_b 74.503 _cell.length_c 171.691 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H12 O7 P2' _chem_comp.formula_weight 246.092 _chem_comp.id IPE _chem_comp.mon_nstd_flag . _chem_comp.name '3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ISOPENTENYL PYROPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 IPE sing 286 n n C1 C2 IPE sing 287 n n C1 H11 IPE sing 288 n n C1 H12 IPE sing 289 n n O1 PA IPE sing 290 n n C2 C3 IPE sing 291 n n C2 H21 IPE sing 292 n n C2 H22 IPE sing 293 n n C3 C4 IPE doub 294 n n C3 C5 IPE sing 295 n n C4 H41 IPE sing 296 n n C4 H42 IPE sing 297 n n C5 H51 IPE sing 298 n n C5 H52 IPE sing 299 n n C5 H53 IPE sing 300 n n PA O1A IPE doub 301 n n PA O2A IPE sing 302 n n PA O3A IPE sing 303 n n O2A H2A IPE sing 304 n n O3A PB IPE sing 305 n n PB O1B IPE sing 306 n n PB O2B IPE doub 307 n n PB O3B IPE sing 308 n n O1B H1B IPE sing 309 n n O3B H3B IPE sing 310 n n # _atom_sites.entry_id 7LNU _atom_sites.fract_transf_matrix[1][1] 0.024455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IP8 A 1 301 300 IP8 IP8 . D 3 ADP A 1 302 400 ADP ADP . E 4 ATP A 1 303 401 ATP ATP . F 5 IPE A 1 304 301 IPE IPE . G 2 IP8 B 1 301 300 IP8 IP8 . H 3 ADP B 1 302 400 ADP ADP . I 6 HOH A 1 401 162 HOH HOH . I 6 HOH A 2 402 17 HOH HOH . I 6 HOH A 3 403 161 HOH HOH . I 6 HOH A 4 404 18 HOH HOH . I 6 HOH A 5 405 106 HOH HOH . I 6 HOH A 6 406 48 HOH HOH . I 6 HOH A 7 407 133 HOH HOH . I 6 HOH A 8 408 22 HOH HOH . I 6 HOH A 9 409 61 HOH HOH . I 6 HOH A 10 410 88 HOH HOH . I 6 HOH A 11 411 9 HOH HOH . I 6 HOH A 12 412 103 HOH HOH . I 6 HOH A 13 413 163 HOH HOH . I 6 HOH A 14 414 37 HOH HOH . I 6 HOH A 15 415 176 HOH HOH . I 6 HOH A 16 416 5 HOH HOH . I 6 HOH A 17 417 36 HOH HOH . I 6 HOH A 18 418 39 HOH HOH . I 6 HOH A 19 419 64 HOH HOH . I 6 HOH A 20 420 63 HOH HOH . I 6 HOH A 21 421 15 HOH HOH . I 6 HOH A 22 422 136 HOH HOH . I 6 HOH A 23 423 92 HOH HOH . I 6 HOH A 24 424 119 HOH HOH . I 6 HOH A 25 425 29 HOH HOH . I 6 HOH A 26 426 32 HOH HOH . I 6 HOH A 27 427 110 HOH HOH . I 6 HOH A 28 428 31 HOH HOH . I 6 HOH A 29 429 14 HOH HOH . I 6 HOH A 30 430 124 HOH HOH . I 6 HOH A 31 431 65 HOH HOH . I 6 HOH A 32 432 175 HOH HOH . I 6 HOH A 33 433 45 HOH HOH . I 6 HOH A 34 434 151 HOH HOH . I 6 HOH A 35 435 4 HOH HOH . I 6 HOH A 36 436 105 HOH HOH . I 6 HOH A 37 437 98 HOH HOH . I 6 HOH A 38 438 158 HOH HOH . I 6 HOH A 39 439 20 HOH HOH . I 6 HOH A 40 440 94 HOH HOH . I 6 HOH A 41 441 52 HOH HOH . I 6 HOH A 42 442 51 HOH HOH . I 6 HOH A 43 443 56 HOH HOH . I 6 HOH A 44 444 107 HOH HOH . I 6 HOH A 45 445 99 HOH HOH . I 6 HOH A 46 446 40 HOH HOH . I 6 HOH A 47 447 35 HOH HOH . I 6 HOH A 48 448 170 HOH HOH . I 6 HOH A 49 449 66 HOH HOH . I 6 HOH A 50 450 72 HOH HOH . I 6 HOH A 51 451 75 HOH HOH . I 6 HOH A 52 452 1 HOH HOH . I 6 HOH A 53 453 69 HOH HOH . I 6 HOH A 54 454 168 HOH HOH . I 6 HOH A 55 455 12 HOH HOH . I 6 HOH A 56 456 148 HOH HOH . I 6 HOH A 57 457 73 HOH HOH . I 6 HOH A 58 458 132 HOH HOH . I 6 HOH A 59 459 2 HOH HOH . I 6 HOH A 60 460 139 HOH HOH . I 6 HOH A 61 461 169 HOH HOH . I 6 HOH A 62 462 144 HOH HOH . I 6 HOH A 63 463 149 HOH HOH . I 6 HOH A 64 464 174 HOH HOH . I 6 HOH A 65 465 173 HOH HOH . I 6 HOH A 66 466 129 HOH HOH . I 6 HOH A 67 467 118 HOH HOH . I 6 HOH A 68 468 79 HOH HOH . I 6 HOH A 69 469 108 HOH HOH . I 6 HOH A 70 470 121 HOH HOH . I 6 HOH A 71 471 147 HOH HOH . J 6 HOH B 1 401 23 HOH HOH . J 6 HOH B 2 402 68 HOH HOH . J 6 HOH B 3 403 166 HOH HOH . J 6 HOH B 4 404 49 HOH HOH . J 6 HOH B 5 405 77 HOH HOH . J 6 HOH B 6 406 153 HOH HOH . J 6 HOH B 7 407 130 HOH HOH . J 6 HOH B 8 408 16 HOH HOH . J 6 HOH B 9 409 67 HOH HOH . J 6 HOH B 10 410 7 HOH HOH . J 6 HOH B 11 411 57 HOH HOH . J 6 HOH B 12 412 113 HOH HOH . J 6 HOH B 13 413 178 HOH HOH . J 6 HOH B 14 414 26 HOH HOH . J 6 HOH B 15 415 146 HOH HOH . J 6 HOH B 16 416 55 HOH HOH . J 6 HOH B 17 417 43 HOH HOH . J 6 HOH B 18 418 47 HOH HOH . J 6 HOH B 19 419 42 HOH HOH . J 6 HOH B 20 420 58 HOH HOH . J 6 HOH B 21 421 6 HOH HOH . J 6 HOH B 22 422 114 HOH HOH . J 6 HOH B 23 423 10 HOH HOH . J 6 HOH B 24 424 83 HOH HOH . J 6 HOH B 25 425 71 HOH HOH . J 6 HOH B 26 426 11 HOH HOH . J 6 HOH B 27 427 33 HOH HOH . J 6 HOH B 28 428 41 HOH HOH . J 6 HOH B 29 429 70 HOH HOH . J 6 HOH B 30 430 54 HOH HOH . J 6 HOH B 31 431 172 HOH HOH . J 6 HOH B 32 432 95 HOH HOH . J 6 HOH B 33 433 21 HOH HOH . J 6 HOH B 34 434 3 HOH HOH . J 6 HOH B 35 435 50 HOH HOH . J 6 HOH B 36 436 112 HOH HOH . J 6 HOH B 37 437 13 HOH HOH . J 6 HOH B 38 438 97 HOH HOH . J 6 HOH B 39 439 27 HOH HOH . J 6 HOH B 40 440 62 HOH HOH . J 6 HOH B 41 441 116 HOH HOH . J 6 HOH B 42 442 87 HOH HOH . J 6 HOH B 43 443 85 HOH HOH . J 6 HOH B 44 444 80 HOH HOH . J 6 HOH B 45 445 90 HOH HOH . J 6 HOH B 46 446 59 HOH HOH . J 6 HOH B 47 447 86 HOH HOH . J 6 HOH B 48 448 8 HOH HOH . J 6 HOH B 49 449 111 HOH HOH . J 6 HOH B 50 450 28 HOH HOH . J 6 HOH B 51 451 19 HOH HOH . J 6 HOH B 52 452 145 HOH HOH . J 6 HOH B 53 453 24 HOH HOH . J 6 HOH B 54 454 53 HOH HOH . J 6 HOH B 55 455 30 HOH HOH . J 6 HOH B 56 456 150 HOH HOH . J 6 HOH B 57 457 78 HOH HOH . J 6 HOH B 58 458 138 HOH HOH . J 6 HOH B 59 459 164 HOH HOH . J 6 HOH B 60 460 131 HOH HOH . J 6 HOH B 61 461 89 HOH HOH . J 6 HOH B 62 462 135 HOH HOH . J 6 HOH B 63 463 46 HOH HOH . J 6 HOH B 64 464 160 HOH HOH . J 6 HOH B 65 465 34 HOH HOH . J 6 HOH B 66 466 137 HOH HOH . J 6 HOH B 67 467 74 HOH HOH . J 6 HOH B 68 468 101 HOH HOH . J 6 HOH B 69 469 91 HOH HOH . J 6 HOH B 70 470 76 HOH HOH . J 6 HOH B 71 471 142 HOH HOH . J 6 HOH B 72 472 143 HOH HOH . J 6 HOH B 73 473 25 HOH HOH . J 6 HOH B 74 474 115 HOH HOH . J 6 HOH B 75 475 140 HOH HOH . J 6 HOH B 76 476 177 HOH HOH . J 6 HOH B 77 477 84 HOH HOH . J 6 HOH B 78 478 102 HOH HOH . J 6 HOH B 79 479 81 HOH HOH . J 6 HOH B 80 480 127 HOH HOH . J 6 HOH B 81 481 154 HOH HOH . J 6 HOH B 82 482 159 HOH HOH . J 6 HOH B 83 483 141 HOH HOH . J 6 HOH B 84 484 123 HOH HOH . J 6 HOH B 85 485 155 HOH HOH . J 6 HOH B 86 486 117 HOH HOH . J 6 HOH B 87 487 82 HOH HOH . J 6 HOH B 88 488 165 HOH HOH . J 6 HOH B 89 489 171 HOH HOH . J 6 HOH B 90 490 60 HOH HOH . J 6 HOH B 91 491 167 HOH HOH . J 6 HOH B 92 492 125 HOH HOH . J 6 HOH B 93 493 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPE . B . F 5 -4.222 -2.039 34.248 0.41 21.08 ? C1 IPE 304 A 1 HETATM 2 O O1 IPE . B . F 5 -5.133 -2.955 34.9 0.41 23.12 ? O1 IPE 304 A 1 HETATM 3 C C2 IPE . B . F 5 -4.928 -1.335 33.121 0.41 20.84 ? C2 IPE 304 A 1 HETATM 4 C C3 IPE . B . F 5 -4.069 -0.357 32.369 0.41 20.41 ? C3 IPE 304 A 1 HETATM 5 C C4 IPE . B . F 5 -4.52 0.312 31.319 0.41 20.45 ? C4 IPE 304 A 1 HETATM 6 C C5 IPE . B . F 5 -2.672 -0.188 32.888 0.41 19.96 ? C5 IPE 304 A 1 HETATM 7 P PA IPE . B . F 5 -4.6 -3.86 36.113 0.41 25.6 ? PA IPE 304 A 1 HETATM 8 O O1A IPE . B . F 5 -3.353 -4.552 35.669 0.41 23.41 ? O1A IPE 304 A 1 HETATM 9 O O2A IPE . B . F 5 -5.736 -4.68 36.628 0.41 27.23 ? O2A IPE 304 A 1 HETATM 10 O O3A IPE . B . F 5 -4.221 -2.738 37.195 0.41 27.52 ? O3A IPE 304 A 1 HETATM 11 P PB IPE . B . F 5 -3.645 -2.812 38.701 0.41 33.86 ? PB IPE 304 A 1 HETATM 12 O O1B IPE . B . F 5 -4.701 -3.518 39.518 0.41 35.78 ? O1B IPE 304 A 1 HETATM 13 O O2B IPE . B . F 5 -2.358 -3.594 38.616 0.41 28.51 ? O2B IPE 304 A 1 HETATM 14 O O3B IPE . B . F 5 -3.432 -1.381 39.132 0.41 28.14 ? O3B IPE 304 A 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 503 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #