data_7LNV # _model_server_result.job_id 1EBqHkDogjch-a-cqrY1MQ _model_server_result.datetime_utc '2025-02-23 15:45:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 7LNV # _exptl.entry_id 7LNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.2 _cell.angle_gamma 90 _cell.entry_id 7LNV _cell.length_a 194.392 _cell.length_b 45.63 _cell.length_c 113.874 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,E,F,G,I,J 1 1 A,D,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 58.989808 0 -97.40375 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7LNV _atom_sites.fract_transf_matrix[1][1] 0.005144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 301 301 GOL GOL . E 3 MLI B 1 301 301 MLI MLI . F 2 GOL B 1 302 501 GOL GOL . G 3 MLI C 1 301 301 MLI MLI . H 4 HOH A 1 401 183 HOH HOH . H 4 HOH A 2 402 61 HOH HOH . H 4 HOH A 3 403 23 HOH HOH . H 4 HOH A 4 404 43 HOH HOH . H 4 HOH A 5 405 83 HOH HOH . H 4 HOH A 6 406 121 HOH HOH . H 4 HOH A 7 407 58 HOH HOH . H 4 HOH A 8 408 72 HOH HOH . H 4 HOH A 9 409 154 HOH HOH . H 4 HOH A 10 410 47 HOH HOH . H 4 HOH A 11 411 173 HOH HOH . H 4 HOH A 12 412 24 HOH HOH . H 4 HOH A 13 413 82 HOH HOH . H 4 HOH A 14 414 10 HOH HOH . H 4 HOH A 15 415 55 HOH HOH . H 4 HOH A 16 416 101 HOH HOH . H 4 HOH A 17 417 1 HOH HOH . H 4 HOH A 18 418 87 HOH HOH . H 4 HOH A 19 419 50 HOH HOH . H 4 HOH A 20 420 52 HOH HOH . H 4 HOH A 21 421 254 HOH HOH . H 4 HOH A 22 422 185 HOH HOH . H 4 HOH A 23 423 120 HOH HOH . H 4 HOH A 24 424 136 HOH HOH . H 4 HOH A 25 425 149 HOH HOH . H 4 HOH A 26 426 174 HOH HOH . H 4 HOH A 27 427 33 HOH HOH . H 4 HOH A 28 428 148 HOH HOH . H 4 HOH A 29 429 245 HOH HOH . H 4 HOH A 30 430 106 HOH HOH . H 4 HOH A 31 431 60 HOH HOH . H 4 HOH A 32 432 218 HOH HOH . H 4 HOH A 33 433 4 HOH HOH . H 4 HOH A 34 434 181 HOH HOH . H 4 HOH A 35 435 32 HOH HOH . H 4 HOH A 36 436 224 HOH HOH . H 4 HOH A 37 437 12 HOH HOH . H 4 HOH A 38 438 69 HOH HOH . H 4 HOH A 39 439 45 HOH HOH . H 4 HOH A 40 440 78 HOH HOH . H 4 HOH A 41 441 62 HOH HOH . H 4 HOH A 42 442 14 HOH HOH . H 4 HOH A 43 443 125 HOH HOH . H 4 HOH A 44 444 204 HOH HOH . H 4 HOH A 45 445 5 HOH HOH . H 4 HOH A 46 446 98 HOH HOH . H 4 HOH A 47 447 182 HOH HOH . H 4 HOH A 48 448 63 HOH HOH . H 4 HOH A 49 449 97 HOH HOH . H 4 HOH A 50 450 31 HOH HOH . H 4 HOH A 51 451 75 HOH HOH . H 4 HOH A 52 452 113 HOH HOH . H 4 HOH A 53 453 138 HOH HOH . H 4 HOH A 54 454 79 HOH HOH . H 4 HOH A 55 455 150 HOH HOH . H 4 HOH A 56 456 53 HOH HOH . H 4 HOH A 57 457 105 HOH HOH . H 4 HOH A 58 458 196 HOH HOH . H 4 HOH A 59 459 160 HOH HOH . H 4 HOH A 60 460 161 HOH HOH . H 4 HOH A 61 461 240 HOH HOH . H 4 HOH A 62 462 178 HOH HOH . H 4 HOH A 63 463 153 HOH HOH . H 4 HOH A 64 464 179 HOH HOH . H 4 HOH A 65 465 249 HOH HOH . H 4 HOH A 66 466 236 HOH HOH . H 4 HOH A 67 467 119 HOH HOH . H 4 HOH A 68 468 205 HOH HOH . H 4 HOH A 69 469 140 HOH HOH . H 4 HOH A 70 470 177 HOH HOH . H 4 HOH A 71 471 144 HOH HOH . H 4 HOH A 72 472 95 HOH HOH . H 4 HOH A 73 473 180 HOH HOH . I 4 HOH B 1 401 242 HOH HOH . I 4 HOH B 2 402 130 HOH HOH . I 4 HOH B 3 403 143 HOH HOH . I 4 HOH B 4 404 188 HOH HOH . I 4 HOH B 5 405 134 HOH HOH . I 4 HOH B 6 406 64 HOH HOH . I 4 HOH B 7 407 215 HOH HOH . I 4 HOH B 8 408 127 HOH HOH . I 4 HOH B 9 409 104 HOH HOH . I 4 HOH B 10 410 41 HOH HOH . I 4 HOH B 11 411 258 HOH HOH . I 4 HOH B 12 412 107 HOH HOH . I 4 HOH B 13 413 207 HOH HOH . I 4 HOH B 14 414 158 HOH HOH . I 4 HOH B 15 415 186 HOH HOH . I 4 HOH B 16 416 253 HOH HOH . I 4 HOH B 17 417 108 HOH HOH . I 4 HOH B 18 418 51 HOH HOH . I 4 HOH B 19 419 187 HOH HOH . I 4 HOH B 20 420 8 HOH HOH . I 4 HOH B 21 421 70 HOH HOH . I 4 HOH B 22 422 77 HOH HOH . I 4 HOH B 23 423 175 HOH HOH . I 4 HOH B 24 424 3 HOH HOH . I 4 HOH B 25 425 26 HOH HOH . I 4 HOH B 26 426 139 HOH HOH . I 4 HOH B 27 427 128 HOH HOH . I 4 HOH B 28 428 6 HOH HOH . I 4 HOH B 29 429 37 HOH HOH . I 4 HOH B 30 430 13 HOH HOH . I 4 HOH B 31 431 115 HOH HOH . I 4 HOH B 32 432 92 HOH HOH . I 4 HOH B 33 433 11 HOH HOH . I 4 HOH B 34 434 129 HOH HOH . I 4 HOH B 35 435 2 HOH HOH . I 4 HOH B 36 436 9 HOH HOH . I 4 HOH B 37 437 164 HOH HOH . I 4 HOH B 38 438 71 HOH HOH . I 4 HOH B 39 439 74 HOH HOH . I 4 HOH B 40 440 27 HOH HOH . I 4 HOH B 41 441 132 HOH HOH . I 4 HOH B 42 442 201 HOH HOH . I 4 HOH B 43 443 96 HOH HOH . I 4 HOH B 44 444 239 HOH HOH . I 4 HOH B 45 445 248 HOH HOH . I 4 HOH B 46 446 35 HOH HOH . I 4 HOH B 47 447 117 HOH HOH . I 4 HOH B 48 448 48 HOH HOH . I 4 HOH B 49 449 110 HOH HOH . I 4 HOH B 50 450 124 HOH HOH . I 4 HOH B 51 451 29 HOH HOH . I 4 HOH B 52 452 66 HOH HOH . I 4 HOH B 53 453 212 HOH HOH . I 4 HOH B 54 454 100 HOH HOH . I 4 HOH B 55 455 230 HOH HOH . I 4 HOH B 56 456 39 HOH HOH . I 4 HOH B 57 457 225 HOH HOH . I 4 HOH B 58 458 223 HOH HOH . I 4 HOH B 59 459 156 HOH HOH . I 4 HOH B 60 460 93 HOH HOH . I 4 HOH B 61 461 68 HOH HOH . I 4 HOH B 62 462 167 HOH HOH . I 4 HOH B 63 463 194 HOH HOH . I 4 HOH B 64 464 198 HOH HOH . I 4 HOH B 65 465 30 HOH HOH . I 4 HOH B 66 466 163 HOH HOH . I 4 HOH B 67 467 226 HOH HOH . I 4 HOH B 68 468 38 HOH HOH . I 4 HOH B 69 469 118 HOH HOH . I 4 HOH B 70 470 42 HOH HOH . I 4 HOH B 71 471 176 HOH HOH . I 4 HOH B 72 472 40 HOH HOH . I 4 HOH B 73 473 109 HOH HOH . I 4 HOH B 74 474 102 HOH HOH . I 4 HOH B 75 475 122 HOH HOH . I 4 HOH B 76 476 18 HOH HOH . I 4 HOH B 77 477 80 HOH HOH . I 4 HOH B 78 478 89 HOH HOH . I 4 HOH B 79 479 86 HOH HOH . I 4 HOH B 80 480 238 HOH HOH . I 4 HOH B 81 481 59 HOH HOH . I 4 HOH B 82 482 168 HOH HOH . I 4 HOH B 83 483 114 HOH HOH . I 4 HOH B 84 484 221 HOH HOH . I 4 HOH B 85 485 123 HOH HOH . I 4 HOH B 86 486 142 HOH HOH . I 4 HOH B 87 487 157 HOH HOH . I 4 HOH B 88 488 229 HOH HOH . I 4 HOH B 89 489 112 HOH HOH . I 4 HOH B 90 490 257 HOH HOH . I 4 HOH B 91 491 209 HOH HOH . I 4 HOH B 92 492 85 HOH HOH . I 4 HOH B 93 493 233 HOH HOH . I 4 HOH B 94 494 94 HOH HOH . I 4 HOH B 95 495 56 HOH HOH . I 4 HOH B 96 496 172 HOH HOH . I 4 HOH B 97 497 197 HOH HOH . I 4 HOH B 98 498 103 HOH HOH . I 4 HOH B 99 499 250 HOH HOH . I 4 HOH B 100 500 159 HOH HOH . I 4 HOH B 101 501 190 HOH HOH . I 4 HOH B 102 502 193 HOH HOH . I 4 HOH B 103 503 67 HOH HOH . I 4 HOH B 104 504 231 HOH HOH . I 4 HOH B 105 505 146 HOH HOH . I 4 HOH B 106 506 220 HOH HOH . I 4 HOH B 107 507 213 HOH HOH . I 4 HOH B 108 508 137 HOH HOH . I 4 HOH B 109 509 192 HOH HOH . I 4 HOH B 110 510 235 HOH HOH . I 4 HOH B 111 511 151 HOH HOH . I 4 HOH B 112 512 126 HOH HOH . J 4 HOH C 1 401 19 HOH HOH . J 4 HOH C 2 402 88 HOH HOH . J 4 HOH C 3 403 91 HOH HOH . J 4 HOH C 4 404 162 HOH HOH . J 4 HOH C 5 405 202 HOH HOH . J 4 HOH C 6 406 171 HOH HOH . J 4 HOH C 7 407 237 HOH HOH . J 4 HOH C 8 408 81 HOH HOH . J 4 HOH C 9 409 116 HOH HOH . J 4 HOH C 10 410 16 HOH HOH . J 4 HOH C 11 411 17 HOH HOH . J 4 HOH C 12 412 28 HOH HOH . J 4 HOH C 13 413 184 HOH HOH . J 4 HOH C 14 414 25 HOH HOH . J 4 HOH C 15 415 54 HOH HOH . J 4 HOH C 16 416 256 HOH HOH . J 4 HOH C 17 417 133 HOH HOH . J 4 HOH C 18 418 46 HOH HOH . J 4 HOH C 19 419 247 HOH HOH . J 4 HOH C 20 420 15 HOH HOH . J 4 HOH C 21 421 99 HOH HOH . J 4 HOH C 22 422 73 HOH HOH . J 4 HOH C 23 423 234 HOH HOH . J 4 HOH C 24 424 22 HOH HOH . J 4 HOH C 25 425 222 HOH HOH . J 4 HOH C 26 426 191 HOH HOH . J 4 HOH C 27 427 111 HOH HOH . J 4 HOH C 28 428 243 HOH HOH . J 4 HOH C 29 429 90 HOH HOH . J 4 HOH C 30 430 34 HOH HOH . J 4 HOH C 31 431 155 HOH HOH . J 4 HOH C 32 432 166 HOH HOH . J 4 HOH C 33 433 147 HOH HOH . J 4 HOH C 34 434 244 HOH HOH . J 4 HOH C 35 435 170 HOH HOH . J 4 HOH C 36 436 216 HOH HOH . J 4 HOH C 37 437 57 HOH HOH . J 4 HOH C 38 438 214 HOH HOH . J 4 HOH C 39 439 165 HOH HOH . J 4 HOH C 40 440 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 36.443 32.772 40.592 1 42.24 ? C1 GOL 302 B 1 HETATM 2 O O1 GOL . . . F 2 36.497 31.657 41.443 1 40.04 ? O1 GOL 302 B 1 HETATM 3 C C2 GOL . . . F 2 35.081 33.494 40.851 1 41.12 ? C2 GOL 302 B 1 HETATM 4 O O2 GOL . . . F 2 34.934 33.875 42.182 1 39.86 ? O2 GOL 302 B 1 HETATM 5 C C3 GOL . . . F 2 35.062 34.706 39.872 1 40.2 ? C3 GOL 302 B 1 HETATM 6 O O3 GOL . . . F 2 33.74 35.19 39.831 1 40.84 ? O3 GOL 302 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #