data_7LNW # _model_server_result.job_id xIWZfIX2UBPTtZ7iI8fHKg _model_server_result.datetime_utc '2025-02-23 16:29:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7LNW # _exptl.entry_id 7LNW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.017 _cell.angle_gamma 90 _cell.entry_id 7LNW _cell.length_a 49.249 _cell.length_b 92.998 _cell.length_c 52.145 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7LNW _atom_sites.fract_transf_matrix[1][1] 0.020305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000715 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 301 ADP ADP . D 3 Y77 A 1 302 401 Y77 WZT . E 2 ADP B 1 301 301 ADP ADP . F 3 Y77 B 1 302 401 Y77 WZT . G 4 HOH A 1 401 5 HOH HOH . G 4 HOH A 2 402 93 HOH HOH . G 4 HOH A 3 403 64 HOH HOH . G 4 HOH A 4 404 92 HOH HOH . G 4 HOH A 5 405 21 HOH HOH . G 4 HOH A 6 406 47 HOH HOH . G 4 HOH A 7 407 91 HOH HOH . G 4 HOH A 8 408 45 HOH HOH . G 4 HOH A 9 409 43 HOH HOH . G 4 HOH A 10 410 31 HOH HOH . G 4 HOH A 11 411 53 HOH HOH . G 4 HOH A 12 412 1 HOH HOH . G 4 HOH A 13 413 88 HOH HOH . G 4 HOH A 14 414 89 HOH HOH . G 4 HOH A 15 415 39 HOH HOH . G 4 HOH A 16 416 8 HOH HOH . G 4 HOH A 17 417 9 HOH HOH . G 4 HOH A 18 418 57 HOH HOH . G 4 HOH A 19 419 36 HOH HOH . G 4 HOH A 20 420 72 HOH HOH . G 4 HOH A 21 421 11 HOH HOH . G 4 HOH A 22 422 41 HOH HOH . G 4 HOH A 23 423 2 HOH HOH . G 4 HOH A 24 424 40 HOH HOH . G 4 HOH A 25 425 6 HOH HOH . G 4 HOH A 26 426 13 HOH HOH . G 4 HOH A 27 427 10 HOH HOH . G 4 HOH A 28 428 78 HOH HOH . G 4 HOH A 29 429 70 HOH HOH . G 4 HOH A 30 430 80 HOH HOH . G 4 HOH A 31 431 44 HOH HOH . G 4 HOH A 32 432 73 HOH HOH . G 4 HOH A 33 433 61 HOH HOH . G 4 HOH A 34 434 17 HOH HOH . G 4 HOH A 35 435 18 HOH HOH . G 4 HOH A 36 436 85 HOH HOH . G 4 HOH A 37 437 83 HOH HOH . G 4 HOH A 38 438 14 HOH HOH . H 4 HOH B 1 401 84 HOH HOH . H 4 HOH B 2 402 62 HOH HOH . H 4 HOH B 3 403 46 HOH HOH . H 4 HOH B 4 404 33 HOH HOH . H 4 HOH B 5 405 4 HOH HOH . H 4 HOH B 6 406 3 HOH HOH . H 4 HOH B 7 407 82 HOH HOH . H 4 HOH B 8 408 48 HOH HOH . H 4 HOH B 9 409 19 HOH HOH . H 4 HOH B 10 410 7 HOH HOH . H 4 HOH B 11 411 29 HOH HOH . H 4 HOH B 12 412 28 HOH HOH . H 4 HOH B 13 413 25 HOH HOH . H 4 HOH B 14 414 55 HOH HOH . H 4 HOH B 15 415 30 HOH HOH . H 4 HOH B 16 416 71 HOH HOH . H 4 HOH B 17 417 87 HOH HOH . H 4 HOH B 18 418 51 HOH HOH . H 4 HOH B 19 419 26 HOH HOH . H 4 HOH B 20 420 60 HOH HOH . H 4 HOH B 21 421 42 HOH HOH . H 4 HOH B 22 422 12 HOH HOH . H 4 HOH B 23 423 38 HOH HOH . H 4 HOH B 24 424 63 HOH HOH . H 4 HOH B 25 425 34 HOH HOH . H 4 HOH B 26 426 59 HOH HOH . H 4 HOH B 27 427 74 HOH HOH . H 4 HOH B 28 428 65 HOH HOH . H 4 HOH B 29 429 35 HOH HOH . H 4 HOH B 30 430 67 HOH HOH . H 4 HOH B 31 431 56 HOH HOH . H 4 HOH B 32 432 68 HOH HOH . H 4 HOH B 33 433 76 HOH HOH . H 4 HOH B 34 434 22 HOH HOH . H 4 HOH B 35 435 27 HOH HOH . H 4 HOH B 36 436 24 HOH HOH . H 4 HOH B 37 437 32 HOH HOH . H 4 HOH B 38 438 37 HOH HOH . H 4 HOH B 39 439 15 HOH HOH . H 4 HOH B 40 440 69 HOH HOH . H 4 HOH B 41 441 77 HOH HOH . H 4 HOH B 42 442 81 HOH HOH . H 4 HOH B 43 443 16 HOH HOH . H 4 HOH B 44 444 75 HOH HOH . H 4 HOH B 45 445 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 -23.281 -32.843 25.052 1 35.36 ? PB ADP 301 B 1 HETATM 2 O O1B ADP . . . E 2 -24.138 -32.544 23.845 1 47.73 ? O1B ADP 301 B 1 HETATM 3 O O2B ADP . . . E 2 -22.218 -31.806 25.33 1 44.79 ? O2B ADP 301 B 1 HETATM 4 O O3B ADP . . . E 2 -22.79 -34.267 25.141 1 38.29 ? O3B ADP 301 B 1 HETATM 5 P PA ADP . . . E 2 -23.767 -32.313 27.753 1 43.23 ? PA ADP 301 B 1 HETATM 6 O O1A ADP . . . E 2 -22.387 -32.905 27.916 1 38.69 ? O1A ADP 301 B 1 HETATM 7 O O2A ADP . . . E 2 -23.956 -30.831 27.974 1 43.71 ? O2A ADP 301 B 1 HETATM 8 O O3A ADP . . . E 2 -24.304 -32.704 26.287 1 51.08 ? O3A ADP 301 B 1 HETATM 9 O O5' ADP . . . E 2 -24.755 -33.126 28.728 1 38.66 ? O5' ADP 301 B 1 HETATM 10 C C5' ADP . . . E 2 -24.478 -34.498 28.996 1 38.57 ? C5' ADP 301 B 1 HETATM 11 C C4' ADP . . . E 2 -24.162 -34.687 30.472 1 27.32 ? C4' ADP 301 B 1 HETATM 12 O O4' ADP . . . E 2 -25.178 -34.121 31.298 1 32.06 ? O4' ADP 301 B 1 HETATM 13 C C3' ADP . . . E 2 -24.078 -36.16 30.837 1 30.72 ? C3' ADP 301 B 1 HETATM 14 O O3' ADP . . . E 2 -22.71 -36.566 30.939 1 35.95 ? O3' ADP 301 B 1 HETATM 15 C C2' ADP . . . E 2 -24.778 -36.282 32.176 1 33.99 ? C2' ADP 301 B 1 HETATM 16 O O2' ADP . . . E 2 -23.852 -36.715 33.176 1 34.48 ? O2' ADP 301 B 1 HETATM 17 C C1' ADP . . . E 2 -25.279 -34.882 32.506 1 35.55 ? C1' ADP 301 B 1 HETATM 18 N N9 ADP . . . E 2 -26.679 -34.847 33.016 1 32.6 ? N9 ADP 301 B 1 HETATM 19 C C8 ADP . . . E 2 -27.13 -33.906 33.866 1 36.87 ? C8 ADP 301 B 1 HETATM 20 N N7 ADP . . . E 2 -28.433 -34.101 34.181 1 39.57 ? N7 ADP 301 B 1 HETATM 21 C C5 ADP . . . E 2 -28.843 -35.198 33.525 1 35.43 ? C5 ADP 301 B 1 HETATM 22 C C6 ADP . . . E 2 -30.114 -35.951 33.424 1 35.2 ? C6 ADP 301 B 1 HETATM 23 N N6 ADP . . . E 2 -31.215 -35.551 34.104 1 35.55 ? N6 ADP 301 B 1 HETATM 24 N N1 ADP . . . E 2 -30.138 -37.046 32.633 1 36.51 ? N1 ADP 301 B 1 HETATM 25 C C2 ADP . . . E 2 -29.046 -37.446 31.957 1 34.55 ? C2 ADP 301 B 1 HETATM 26 N N3 ADP . . . E 2 -27.862 -36.808 32.005 1 36.1 ? N3 ADP 301 B 1 HETATM 27 C C4 ADP . . . E 2 -27.686 -35.696 32.762 1 33.23 ? C4 ADP 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #