data_7LNW
#
_model_server_result.job_id            wPuulbO-uZjcnpYRHAz4Ig 
_model_server_result.datetime_utc      '2025-02-23 16:28:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lnw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    7LNW 
#
_exptl.entry_id    7LNW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              222.159 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(~{Z})-5-[(azanylidene-$l^{4}-azanylidene)amino]-3-methyl-pent-2-enyl] dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.017 
_cell.angle_gamma         90 
_cell.entry_id            7LNW 
_cell.length_a            49.249 
_cell.length_b            92.998 
_cell.length_c            52.145 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LNW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C6 H13 N3 O4 P' 
_chem_comp.formula_weight    222.159 
_chem_comp.id                Y77 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(~{Z})-5-[(azanylidene-$l^{4}-azanylidene)amino]-3-methyl-pent-2-enyl] dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N07 N06 Y77 doub 392 n n 
N06 N05 Y77 doub 393 n n 
N05 C04 Y77 sing 394 n n 
C04 C03 Y77 sing 395 n n 
O14 P11 Y77 doub 396 n n 
C03 C02 Y77 sing 397 n n 
C09 O10 Y77 sing 398 n n 
C09 C08 Y77 sing 399 n n 
C02 C08 Y77 doub 400 z n 
C02 C01 Y77 sing 401 n n 
P11 O10 Y77 sing 402 n n 
P11 O13 Y77 sing 403 n n 
P11 O12 Y77 sing 404 n n 
C01 H1 Y77 sing 405 n n 
C01 H2 Y77 sing 406 n n 
C01 H3 Y77 sing 407 n n 
C03 H4 Y77 sing 408 n n 
C03 H5 Y77 sing 409 n n 
C04 H6 Y77 sing 410 n n 
C04 H7 Y77 sing 411 n n 
C08 H8 Y77 sing 412 n n 
C09 H9 Y77 sing 413 n n 
C09 H10 Y77 sing 414 n n 
N07 H11 Y77 sing 415 n n 
O12 H12 Y77 sing 416 n n 
O13 H13 Y77 sing 417 n n 
#
_atom_sites.entry_id                     7LNW 
_atom_sites.fract_transf_matrix[1][1]    0.020305 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000715 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010753 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019189 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 301 301 ADP ADP . 
D 3 Y77 A 1 302 401 Y77 WZT . 
E 2 ADP B 1 301 301 ADP ADP . 
F 3 Y77 B 1 302 401 Y77 WZT . 
G 4 HOH A 1 401 5 HOH HOH . 
G 4 HOH A 2 402 93 HOH HOH . 
G 4 HOH A 3 403 64 HOH HOH . 
G 4 HOH A 4 404 92 HOH HOH . 
G 4 HOH A 5 405 21 HOH HOH . 
G 4 HOH A 6 406 47 HOH HOH . 
G 4 HOH A 7 407 91 HOH HOH . 
G 4 HOH A 8 408 45 HOH HOH . 
G 4 HOH A 9 409 43 HOH HOH . 
G 4 HOH A 10 410 31 HOH HOH . 
G 4 HOH A 11 411 53 HOH HOH . 
G 4 HOH A 12 412 1 HOH HOH . 
G 4 HOH A 13 413 88 HOH HOH . 
G 4 HOH A 14 414 89 HOH HOH . 
G 4 HOH A 15 415 39 HOH HOH . 
G 4 HOH A 16 416 8 HOH HOH . 
G 4 HOH A 17 417 9 HOH HOH . 
G 4 HOH A 18 418 57 HOH HOH . 
G 4 HOH A 19 419 36 HOH HOH . 
G 4 HOH A 20 420 72 HOH HOH . 
G 4 HOH A 21 421 11 HOH HOH . 
G 4 HOH A 22 422 41 HOH HOH . 
G 4 HOH A 23 423 2 HOH HOH . 
G 4 HOH A 24 424 40 HOH HOH . 
G 4 HOH A 25 425 6 HOH HOH . 
G 4 HOH A 26 426 13 HOH HOH . 
G 4 HOH A 27 427 10 HOH HOH . 
G 4 HOH A 28 428 78 HOH HOH . 
G 4 HOH A 29 429 70 HOH HOH . 
G 4 HOH A 30 430 80 HOH HOH . 
G 4 HOH A 31 431 44 HOH HOH . 
G 4 HOH A 32 432 73 HOH HOH . 
G 4 HOH A 33 433 61 HOH HOH . 
G 4 HOH A 34 434 17 HOH HOH . 
G 4 HOH A 35 435 18 HOH HOH . 
G 4 HOH A 36 436 85 HOH HOH . 
G 4 HOH A 37 437 83 HOH HOH . 
G 4 HOH A 38 438 14 HOH HOH . 
H 4 HOH B 1 401 84 HOH HOH . 
H 4 HOH B 2 402 62 HOH HOH . 
H 4 HOH B 3 403 46 HOH HOH . 
H 4 HOH B 4 404 33 HOH HOH . 
H 4 HOH B 5 405 4 HOH HOH . 
H 4 HOH B 6 406 3 HOH HOH . 
H 4 HOH B 7 407 82 HOH HOH . 
H 4 HOH B 8 408 48 HOH HOH . 
H 4 HOH B 9 409 19 HOH HOH . 
H 4 HOH B 10 410 7 HOH HOH . 
H 4 HOH B 11 411 29 HOH HOH . 
H 4 HOH B 12 412 28 HOH HOH . 
H 4 HOH B 13 413 25 HOH HOH . 
H 4 HOH B 14 414 55 HOH HOH . 
H 4 HOH B 15 415 30 HOH HOH . 
H 4 HOH B 16 416 71 HOH HOH . 
H 4 HOH B 17 417 87 HOH HOH . 
H 4 HOH B 18 418 51 HOH HOH . 
H 4 HOH B 19 419 26 HOH HOH . 
H 4 HOH B 20 420 60 HOH HOH . 
H 4 HOH B 21 421 42 HOH HOH . 
H 4 HOH B 22 422 12 HOH HOH . 
H 4 HOH B 23 423 38 HOH HOH . 
H 4 HOH B 24 424 63 HOH HOH . 
H 4 HOH B 25 425 34 HOH HOH . 
H 4 HOH B 26 426 59 HOH HOH . 
H 4 HOH B 27 427 74 HOH HOH . 
H 4 HOH B 28 428 65 HOH HOH . 
H 4 HOH B 29 429 35 HOH HOH . 
H 4 HOH B 30 430 67 HOH HOH . 
H 4 HOH B 31 431 56 HOH HOH . 
H 4 HOH B 32 432 68 HOH HOH . 
H 4 HOH B 33 433 76 HOH HOH . 
H 4 HOH B 34 434 22 HOH HOH . 
H 4 HOH B 35 435 27 HOH HOH . 
H 4 HOH B 36 436 24 HOH HOH . 
H 4 HOH B 37 437 32 HOH HOH . 
H 4 HOH B 38 438 37 HOH HOH . 
H 4 HOH B 39 439 15 HOH HOH . 
H 4 HOH B 40 440 69 HOH HOH . 
H 4 HOH B 41 441 77 HOH HOH . 
H 4 HOH B 42 442 81 HOH HOH . 
H 4 HOH B 43 443 16 HOH HOH . 
H 4 HOH B 44 444 75 HOH HOH . 
H 4 HOH B 45 445 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 Y77 . . . F 3 -18.884 -23.401 21.278 1 38.5 ? C01 Y77 302 B 1 
HETATM 2 C C02 Y77 . . . F 3 -19.629 -23.265 22.632 1 41.62 ? C02 Y77 302 B 1 
HETATM 3 C C03 Y77 . . . F 3 -19.145 -22.347 23.542 1 43.62 ? C03 Y77 302 B 1 
HETATM 4 C C04 Y77 . . . F 3 -17.735 -22.49 23.757 1 47.54 ? C04 Y77 302 B 1 
HETATM 5 C C08 Y77 . . . F 3 -20.756 -24.057 22.932 1 40.39 ? C08 Y77 302 B 1 
HETATM 6 C C09 Y77 . . . F 3 -21.271 -25.077 21.911 1 37.97 ? C09 Y77 302 B 1 
HETATM 7 N N05 Y77 . . . F 3 -17.15 -21.302 23.42 1 49.94 ? N05 Y77 302 B 1 
HETATM 8 N N06 Y77 . . . F 3 -17.924 -20.029 23.738 1 49.92 ? N06 Y77 302 B 1 
HETATM 9 N N07 Y77 . . . F 3 -18.852 -18.631 24.136 1 48.78 ? N07 Y77 302 B 1 
HETATM 10 O O10 Y77 . . . F 3 -22.207 -25.791 22.47 1 44.42 ? O10 Y77 302 B 1 
HETATM 11 O O12 Y77 . . . F 3 -22.33 -28.023 23.752 1 44.58 ? O12 Y77 302 B 1 
HETATM 12 O O13 Y77 . . . F 3 -20.52 -27.874 22.198 1 31.88 ? O13 Y77 302 B 1 
HETATM 13 O O14 Y77 . . . F 3 -22.887 -28.159 21.455 1 31.77 ? O14 Y77 302 B 1 
HETATM 14 P P11 Y77 . . . F 3 -21.99 -27.532 22.501 1 32.67 ? P11 Y77 302 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#