data_7LNX # _model_server_result.job_id 5FQaVz_7bAcwoP2ov0BT2w _model_server_result.datetime_utc '2025-02-23 16:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7LNX # _exptl.entry_id 7LNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LNX _cell.length_a 40.565 _cell.length_b 73.277 _cell.length_c 166.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7LNX _atom_sites.fract_transf_matrix[1][1] 0.024652 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 501 501 ADP ADP . D 3 Y7D A 1 502 502 Y7D Y7D . E 2 ADP B 1 301 301 ADP ADP . F 4 GOL B 1 302 302 GOL GOL . G 5 WOG B 1 303 303 WOG WOG . H 6 HOH A 1 601 601 HOH HOH . H 6 HOH A 2 602 602 HOH HOH . H 6 HOH A 3 603 605 HOH HOH . H 6 HOH A 4 604 603 HOH HOH . H 6 HOH A 5 605 604 HOH HOH . H 6 HOH A 6 606 606 HOH HOH . H 6 HOH A 7 607 607 HOH HOH . H 6 HOH A 8 608 608 HOH HOH . H 6 HOH A 9 609 407 HOH HOH . H 6 HOH A 10 610 610 HOH HOH . H 6 HOH A 11 611 609 HOH HOH . H 6 HOH A 12 612 410 HOH HOH . H 6 HOH A 13 613 611 HOH HOH . H 6 HOH A 14 614 612 HOH HOH . H 6 HOH A 15 615 613 HOH HOH . H 6 HOH A 16 616 614 HOH HOH . H 6 HOH A 17 617 615 HOH HOH . H 6 HOH A 18 618 616 HOH HOH . H 6 HOH A 19 619 617 HOH HOH . H 6 HOH A 20 620 619 HOH HOH . H 6 HOH A 21 621 620 HOH HOH . H 6 HOH A 22 622 618 HOH HOH . H 6 HOH A 23 623 621 HOH HOH . H 6 HOH A 24 624 622 HOH HOH . H 6 HOH A 25 625 624 HOH HOH . H 6 HOH A 26 626 422 HOH HOH . H 6 HOH A 27 627 625 HOH HOH . H 6 HOH A 28 628 623 HOH HOH . H 6 HOH A 29 629 626 HOH HOH . H 6 HOH A 30 630 627 HOH HOH . I 6 HOH B 1 401 404 HOH HOH . I 6 HOH B 2 402 403 HOH HOH . I 6 HOH B 3 403 402 HOH HOH . I 6 HOH B 4 404 405 HOH HOH . I 6 HOH B 5 405 401 HOH HOH . I 6 HOH B 6 406 417 HOH HOH . I 6 HOH B 7 407 406 HOH HOH . I 6 HOH B 8 408 409 HOH HOH . I 6 HOH B 9 409 408 HOH HOH . I 6 HOH B 10 410 412 HOH HOH . I 6 HOH B 11 411 411 HOH HOH . I 6 HOH B 12 412 413 HOH HOH . I 6 HOH B 13 413 414 HOH HOH . I 6 HOH B 14 414 415 HOH HOH . I 6 HOH B 15 415 418 HOH HOH . I 6 HOH B 16 416 420 HOH HOH . I 6 HOH B 17 417 419 HOH HOH . I 6 HOH B 18 418 423 HOH HOH . I 6 HOH B 19 419 421 HOH HOH . I 6 HOH B 20 420 424 HOH HOH . I 6 HOH B 21 421 426 HOH HOH . I 6 HOH B 22 422 425 HOH HOH . I 6 HOH B 23 423 427 HOH HOH . I 6 HOH B 24 424 428 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 -16.12 -6.707 -0.636 1 49.2 ? PB ADP 301 B 1 HETATM 2 O O1B ADP . . . E 2 -15.619 -5.314 -0.933 1 49 ? O1B ADP 301 B 1 HETATM 3 O O2B ADP . . . E 2 -17.213 -6.783 0.403 1 52.67 ? O2B ADP 301 B 1 HETATM 4 O O3B ADP . . . E 2 -15.008 -7.708 -0.436 1 51.64 ? O3B ADP 301 B 1 HETATM 5 P PA ADP . . . E 2 -17.029 -8.686 -2.445 1 51.46 ? PA ADP 301 B 1 HETATM 6 O O1A ADP . . . E 2 -15.687 -9.375 -2.413 1 51.58 ? O1A ADP 301 B 1 HETATM 7 O O2A ADP . . . E 2 -18.18 -9.294 -1.68 1 46.8 ? O2A ADP 301 B 1 HETATM 8 O O3A ADP . . . E 2 -16.858 -7.145 -2.001 1 56.82 ? O3A ADP 301 B 1 HETATM 9 O O5' ADP . . . E 2 -17.452 -8.568 -3.993 1 54.93 ? O5' ADP 301 B 1 HETATM 10 C C5' ADP . . . E 2 -16.439 -8.577 -4.996 1 46.48 ? C5' ADP 301 B 1 HETATM 11 C C4' ADP . . . E 2 -16.689 -9.692 -6.003 1 55.2 ? C4' ADP 301 B 1 HETATM 12 O O4' ADP . . . E 2 -18.043 -9.706 -6.46 1 57.01 ? O4' ADP 301 B 1 HETATM 13 C C3' ADP . . . E 2 -15.814 -9.531 -7.236 1 54.93 ? C3' ADP 301 B 1 HETATM 14 O O3' ADP . . . E 2 -14.722 -10.452 -7.185 1 59.25 ? O3' ADP 301 B 1 HETATM 15 C C2' ADP . . . E 2 -16.716 -9.847 -8.413 1 60.04 ? C2' ADP 301 B 1 HETATM 16 O O2' ADP . . . E 2 -16.207 -10.973 -9.133 1 62.09 ? O2' ADP 301 B 1 HETATM 17 C C1' ADP . . . E 2 -18.074 -10.18 -7.811 1 51.83 ? C1' ADP 301 B 1 HETATM 18 N N9 ADP . . . E 2 -19.215 -9.57 -8.552 1 60.01 ? N9 ADP 301 B 1 HETATM 19 C C8 ADP . . . E 2 -20.429 -10.143 -8.648 1 59.16 ? C8 ADP 301 B 1 HETATM 20 N N7 ADP . . . E 2 -21.281 -9.388 -9.383 1 55.09 ? N7 ADP 301 B 1 HETATM 21 C C5 ADP . . . E 2 -20.607 -8.296 -9.781 1 54.45 ? C5 ADP 301 B 1 HETATM 22 C C6 ADP . . . E 2 -20.925 -7.093 -10.587 1 53.04 ? C6 ADP 301 B 1 HETATM 23 N N6 ADP . . . E 2 -22.157 -6.915 -11.12 1 59.85 ? N6 ADP 301 B 1 HETATM 24 N N1 ADP . . . E 2 -19.946 -6.182 -10.774 1 52.56 ? N1 ADP 301 B 1 HETATM 25 C C2 ADP . . . E 2 -18.72 -6.352 -10.249 1 56.41 ? C2 ADP 301 B 1 HETATM 26 N N3 ADP . . . E 2 -18.365 -7.417 -9.507 1 57.69 ? N3 ADP 301 B 1 HETATM 27 C C4 ADP . . . E 2 -19.242 -8.417 -9.24 1 60.96 ? C4 ADP 301 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #