data_7LNX # _model_server_result.job_id aCaLhlMsbQNFxKCkyMiTdg _model_server_result.datetime_utc '2025-02-23 16:55:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 7LNX # _exptl.entry_id 7LNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.192 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-3-methylhept-2-en-1-yl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LNX _cell.length_a 40.565 _cell.length_b 73.277 _cell.length_c 166.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H17 O4 P' _chem_comp.formula_weight 208.192 _chem_comp.id WOG _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-3-methylhept-2-en-1-yl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 P11 WOG doub 405 n n O14 P11 WOG sing 406 n n P11 O12 WOG sing 407 n n P11 O10 WOG sing 408 n n O10 C09 WOG sing 409 n n C09 C08 WOG sing 410 n n C08 C02 WOG doub 411 e n C02 C03 WOG sing 412 n n C02 C01 WOG sing 413 n n C03 C04 WOG sing 414 n n C04 C05 WOG sing 415 n n C05 C06 WOG sing 416 n n C01 H1 WOG sing 417 n n C01 H2 WOG sing 418 n n C01 H3 WOG sing 419 n n C03 H4 WOG sing 420 n n C03 H5 WOG sing 421 n n C04 H6 WOG sing 422 n n C04 H7 WOG sing 423 n n C05 H8 WOG sing 424 n n C05 H9 WOG sing 425 n n C06 H10 WOG sing 426 n n C06 H11 WOG sing 427 n n C06 H12 WOG sing 428 n n C08 H13 WOG sing 429 n n C09 H14 WOG sing 430 n n C09 H15 WOG sing 431 n n O12 H16 WOG sing 432 n n O14 H17 WOG sing 433 n n # _atom_sites.entry_id 7LNX _atom_sites.fract_transf_matrix[1][1] 0.024652 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 501 501 ADP ADP . D 3 Y7D A 1 502 502 Y7D Y7D . E 2 ADP B 1 301 301 ADP ADP . F 4 GOL B 1 302 302 GOL GOL . G 5 WOG B 1 303 303 WOG WOG . H 6 HOH A 1 601 601 HOH HOH . H 6 HOH A 2 602 602 HOH HOH . H 6 HOH A 3 603 605 HOH HOH . H 6 HOH A 4 604 603 HOH HOH . H 6 HOH A 5 605 604 HOH HOH . H 6 HOH A 6 606 606 HOH HOH . H 6 HOH A 7 607 607 HOH HOH . H 6 HOH A 8 608 608 HOH HOH . H 6 HOH A 9 609 407 HOH HOH . H 6 HOH A 10 610 610 HOH HOH . H 6 HOH A 11 611 609 HOH HOH . H 6 HOH A 12 612 410 HOH HOH . H 6 HOH A 13 613 611 HOH HOH . H 6 HOH A 14 614 612 HOH HOH . H 6 HOH A 15 615 613 HOH HOH . H 6 HOH A 16 616 614 HOH HOH . H 6 HOH A 17 617 615 HOH HOH . H 6 HOH A 18 618 616 HOH HOH . H 6 HOH A 19 619 617 HOH HOH . H 6 HOH A 20 620 619 HOH HOH . H 6 HOH A 21 621 620 HOH HOH . H 6 HOH A 22 622 618 HOH HOH . H 6 HOH A 23 623 621 HOH HOH . H 6 HOH A 24 624 622 HOH HOH . H 6 HOH A 25 625 624 HOH HOH . H 6 HOH A 26 626 422 HOH HOH . H 6 HOH A 27 627 625 HOH HOH . H 6 HOH A 28 628 623 HOH HOH . H 6 HOH A 29 629 626 HOH HOH . H 6 HOH A 30 630 627 HOH HOH . I 6 HOH B 1 401 404 HOH HOH . I 6 HOH B 2 402 403 HOH HOH . I 6 HOH B 3 403 402 HOH HOH . I 6 HOH B 4 404 405 HOH HOH . I 6 HOH B 5 405 401 HOH HOH . I 6 HOH B 6 406 417 HOH HOH . I 6 HOH B 7 407 406 HOH HOH . I 6 HOH B 8 408 409 HOH HOH . I 6 HOH B 9 409 408 HOH HOH . I 6 HOH B 10 410 412 HOH HOH . I 6 HOH B 11 411 411 HOH HOH . I 6 HOH B 12 412 413 HOH HOH . I 6 HOH B 13 413 414 HOH HOH . I 6 HOH B 14 414 415 HOH HOH . I 6 HOH B 15 415 418 HOH HOH . I 6 HOH B 16 416 420 HOH HOH . I 6 HOH B 17 417 419 HOH HOH . I 6 HOH B 18 418 423 HOH HOH . I 6 HOH B 19 419 421 HOH HOH . I 6 HOH B 20 420 424 HOH HOH . I 6 HOH B 21 421 426 HOH HOH . I 6 HOH B 22 422 425 HOH HOH . I 6 HOH B 23 423 427 HOH HOH . I 6 HOH B 24 424 428 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 WOG . . . G 5 -18.282 -11.012 8.518 1 46.66 ? C01 WOG 303 B 1 HETATM 2 C C02 WOG . . . G 5 -19.091 -11.701 7.459 1 49.39 ? C02 WOG 303 B 1 HETATM 3 C C03 WOG . . . G 5 -19.357 -13.187 7.532 1 44.2 ? C03 WOG 303 B 1 HETATM 4 C C04 WOG . . . G 5 -18.926 -13.748 8.883 1 49.75 ? C04 WOG 303 B 1 HETATM 5 C C05 WOG . . . G 5 -20.123 -13.946 9.806 1 49.2 ? C05 WOG 303 B 1 HETATM 6 C C06 WOG . . . G 5 -20.279 -12.792 10.77 1 52.87 ? C06 WOG 303 B 1 HETATM 7 C C08 WOG . . . G 5 -19.584 -10.995 6.433 1 47.51 ? C08 WOG 303 B 1 HETATM 8 C C09 WOG . . . G 5 -19.331 -9.51 6.333 1 46.35 ? C09 WOG 303 B 1 HETATM 9 O O10 WOG . . . G 5 -18.004 -9.284 5.867 1 44.05 ? O10 WOG 303 B 1 HETATM 10 O O12 WOG . . . G 5 -17.987 -7.055 4.664 1 47.27 ? O12 WOG 303 B 1 HETATM 11 O O13 WOG . . . G 5 -18.743 -9.078 3.453 1 53.93 ? O13 WOG 303 B 1 HETATM 12 O O14 WOG . . . G 5 -16.344 -8.791 4.016 1 49.11 ? O14 WOG 303 B 1 HETATM 13 P P11 WOG . . . G 5 -17.763 -8.535 4.465 1 50.61 ? P11 WOG 303 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 605 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #