data_7LO4 # _model_server_result.job_id qlujUw3MOot0lwtXcBNs9w _model_server_result.datetime_utc '2024-11-01 20:39:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lo4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 7LO4 # _exptl.entry_id 7LO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LO4 _cell.length_a 65.606 _cell.length_b 112.176 _cell.length_c 145.989 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 K N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 704 NAG 3 n C NAG 2 C 2 NAG A 706 NAG 3 n C FUC 3 C 3 FUC A 705 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 A CYS 133 1_555 A SG CYS 123 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 326 A CYS 344 1_555 A SG CYS 343 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 512 A CYS 530 1_555 A SG CYS 524 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 B SG CYS 4 B CYS 336 1_555 B SG CYS 29 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 47 B CYS 379 1_555 B SG CYS 100 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 B SG CYS 59 B CYS 391 1_555 B SG CYS 193 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 B SG CYS 148 B CYS 480 1_555 B SG CYS 156 B CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 35 A ASN 53 1_555 D C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 72 A ASN 90 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 85 A ASN 103 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 A ND2 ASN 528 A ASN 546 1_555 F C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale5 B ND2 ASN 11 B ASN 343 1_555 K C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 A NE2 HIS 356 A HIS 374 1_555 J ZN ZN . A ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A NE2 HIS 360 A HIS 378 1_555 J ZN ZN . A ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 A OE1 GLU 384 A GLU 402 1_555 J ZN ZN . A ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc4 A OE2 GLU 384 A GLU 402 1_555 J ZN ZN . A ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 269 n n C1 O1 NAG sing 270 n n C1 O5 NAG sing 271 n n C1 H1 NAG sing 272 n n C2 C3 NAG sing 273 n n C2 N2 NAG sing 274 n n C2 H2 NAG sing 275 n n C3 C4 NAG sing 276 n n C3 O3 NAG sing 277 n n C3 H3 NAG sing 278 n n C4 C5 NAG sing 279 n n C4 O4 NAG sing 280 n n C4 H4 NAG sing 281 n n C5 C6 NAG sing 282 n n C5 O5 NAG sing 283 n n C5 H5 NAG sing 284 n n C6 O6 NAG sing 285 n n C6 H61 NAG sing 286 n n C6 H62 NAG sing 287 n n C7 C8 NAG sing 288 n n C7 N2 NAG sing 289 n n C7 O7 NAG doub 290 n n C8 H81 NAG sing 291 n n C8 H82 NAG sing 292 n n C8 H83 NAG sing 293 n n N2 HN2 NAG sing 294 n n O1 HO1 NAG sing 295 n n O3 HO3 NAG sing 296 n n O4 HO4 NAG sing 297 n n O6 HO6 NAG sing 298 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7LO4 _atom_sites.fract_transf_matrix[1][1] 0.015243 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 701 701 NAG NAG . E 4 NAG A 1 702 702 NAG NAG . F 4 NAG A 1 703 707 NAG NAG . G 5 EDO A 1 704 801 EDO EDO . H 5 EDO A 1 705 802 EDO EDO . I 5 EDO A 1 706 803 EDO EDO . J 6 ZN A 1 707 1 ZN ZN . K 4 NAG B 1 601 601 NAG NAG . L 7 HOH A 1 801 51 HOH HOH . L 7 HOH A 2 802 504 HOH HOH . L 7 HOH A 3 803 486 HOH HOH . L 7 HOH A 4 804 58 HOH HOH . L 7 HOH A 5 805 92 HOH HOH . L 7 HOH A 6 806 145 HOH HOH . L 7 HOH A 7 807 5 HOH HOH . L 7 HOH A 8 808 511 HOH HOH . L 7 HOH A 9 809 54 HOH HOH . L 7 HOH A 10 810 126 HOH HOH . L 7 HOH A 11 811 106 HOH HOH . L 7 HOH A 12 812 478 HOH HOH . L 7 HOH A 13 813 115 HOH HOH . L 7 HOH A 14 814 519 HOH HOH . L 7 HOH A 15 815 16 HOH HOH . L 7 HOH A 16 816 514 HOH HOH . L 7 HOH A 17 817 46 HOH HOH . L 7 HOH A 18 818 71 HOH HOH . L 7 HOH A 19 819 38 HOH HOH . L 7 HOH A 20 820 501 HOH HOH . L 7 HOH A 21 821 66 HOH HOH . L 7 HOH A 22 822 467 HOH HOH . L 7 HOH A 23 823 522 HOH HOH . L 7 HOH A 24 824 525 HOH HOH . L 7 HOH A 25 825 507 HOH HOH . L 7 HOH A 26 826 105 HOH HOH . L 7 HOH A 27 827 45 HOH HOH . L 7 HOH A 28 828 33 HOH HOH . L 7 HOH A 29 829 30 HOH HOH . L 7 HOH A 30 830 53 HOH HOH . L 7 HOH A 31 831 498 HOH HOH . L 7 HOH A 32 832 25 HOH HOH . L 7 HOH A 33 833 83 HOH HOH . L 7 HOH A 34 834 476 HOH HOH . L 7 HOH A 35 835 8 HOH HOH . L 7 HOH A 36 836 490 HOH HOH . L 7 HOH A 37 837 133 HOH HOH . L 7 HOH A 38 838 48 HOH HOH . L 7 HOH A 39 839 513 HOH HOH . L 7 HOH A 40 840 22 HOH HOH . L 7 HOH A 41 841 139 HOH HOH . L 7 HOH A 42 842 529 HOH HOH . L 7 HOH A 43 843 11 HOH HOH . L 7 HOH A 44 844 31 HOH HOH . L 7 HOH A 45 845 474 HOH HOH . L 7 HOH A 46 846 55 HOH HOH . L 7 HOH A 47 847 479 HOH HOH . L 7 HOH A 48 848 56 HOH HOH . L 7 HOH A 49 849 500 HOH HOH . L 7 HOH A 50 850 19 HOH HOH . L 7 HOH A 51 851 7 HOH HOH . L 7 HOH A 52 852 14 HOH HOH . L 7 HOH A 53 853 103 HOH HOH . L 7 HOH A 54 854 461 HOH HOH . L 7 HOH A 55 855 534 HOH HOH . L 7 HOH A 56 856 502 HOH HOH . L 7 HOH A 57 857 524 HOH HOH . L 7 HOH A 58 858 492 HOH HOH . L 7 HOH A 59 859 165 HOH HOH . L 7 HOH A 60 860 102 HOH HOH . L 7 HOH A 61 861 122 HOH HOH . L 7 HOH A 62 862 475 HOH HOH . L 7 HOH A 63 863 60 HOH HOH . L 7 HOH A 64 864 24 HOH HOH . L 7 HOH A 65 865 49 HOH HOH . L 7 HOH A 66 866 466 HOH HOH . L 7 HOH A 67 867 20 HOH HOH . L 7 HOH A 68 868 47 HOH HOH . L 7 HOH A 69 869 6 HOH HOH . L 7 HOH A 70 870 497 HOH HOH . L 7 HOH A 71 871 82 HOH HOH . L 7 HOH A 72 872 469 HOH HOH . L 7 HOH A 73 873 312 HOH HOH . L 7 HOH A 74 874 146 HOH HOH . L 7 HOH A 75 875 43 HOH HOH . L 7 HOH A 76 876 521 HOH HOH . L 7 HOH A 77 877 477 HOH HOH . L 7 HOH A 78 878 220 HOH HOH . L 7 HOH A 79 879 488 HOH HOH . L 7 HOH A 80 880 361 HOH HOH . L 7 HOH A 81 881 37 HOH HOH . L 7 HOH A 82 882 61 HOH HOH . L 7 HOH A 83 883 88 HOH HOH . L 7 HOH A 84 884 487 HOH HOH . L 7 HOH A 85 885 129 HOH HOH . L 7 HOH A 86 886 10 HOH HOH . L 7 HOH A 87 887 116 HOH HOH . L 7 HOH A 88 888 50 HOH HOH . L 7 HOH A 89 889 503 HOH HOH . L 7 HOH A 90 890 144 HOH HOH . L 7 HOH A 91 891 18 HOH HOH . L 7 HOH A 92 892 390 HOH HOH . L 7 HOH A 93 893 73 HOH HOH . L 7 HOH A 94 894 341 HOH HOH . L 7 HOH A 95 895 526 HOH HOH . L 7 HOH A 96 896 36 HOH HOH . L 7 HOH A 97 897 531 HOH HOH . M 7 HOH B 1 701 78 HOH HOH . M 7 HOH B 2 702 509 HOH HOH . M 7 HOH B 3 703 462 HOH HOH . M 7 HOH B 4 704 527 HOH HOH . M 7 HOH B 5 705 84 HOH HOH . M 7 HOH B 6 706 52 HOH HOH . M 7 HOH B 7 707 518 HOH HOH . M 7 HOH B 8 708 40 HOH HOH . M 7 HOH B 9 709 35 HOH HOH . M 7 HOH B 10 710 130 HOH HOH . M 7 HOH B 11 711 15 HOH HOH . M 7 HOH B 12 712 96 HOH HOH . M 7 HOH B 13 713 107 HOH HOH . M 7 HOH B 14 714 64 HOH HOH . M 7 HOH B 15 715 26 HOH HOH . M 7 HOH B 16 716 163 HOH HOH . M 7 HOH B 17 717 27 HOH HOH . M 7 HOH B 18 718 29 HOH HOH . M 7 HOH B 19 719 69 HOH HOH . M 7 HOH B 20 720 508 HOH HOH . M 7 HOH B 21 721 81 HOH HOH . M 7 HOH B 22 722 104 HOH HOH . M 7 HOH B 23 723 39 HOH HOH . M 7 HOH B 24 724 32 HOH HOH . M 7 HOH B 25 725 89 HOH HOH . M 7 HOH B 26 726 472 HOH HOH . M 7 HOH B 27 727 483 HOH HOH . M 7 HOH B 28 728 532 HOH HOH . M 7 HOH B 29 729 463 HOH HOH . M 7 HOH B 30 730 41 HOH HOH . M 7 HOH B 31 731 3 HOH HOH . M 7 HOH B 32 732 528 HOH HOH . M 7 HOH B 33 733 520 HOH HOH . M 7 HOH B 34 734 533 HOH HOH . M 7 HOH B 35 735 459 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 8.637 25.916 -61.721 1 53.71 ? C1 NAG 702 A 1 HETATM 2 C C2 NAG . . . E 4 8.244 26.874 -62.857 1 56 ? C2 NAG 702 A 1 HETATM 3 C C3 NAG . . . E 4 6.813 26.597 -63.329 1 54.54 ? C3 NAG 702 A 1 HETATM 4 C C4 NAG . . . E 4 6.603 25.115 -63.619 1 57.29 ? C4 NAG 702 A 1 HETATM 5 C C5 NAG . . . E 4 7.06 24.276 -62.43 1 57.88 ? C5 NAG 702 A 1 HETATM 6 C C6 NAG . . . E 4 7.02 22.795 -62.707 1 64.74 ? C6 NAG 702 A 1 HETATM 7 C C7 NAG . . . E 4 9.525 28.95 -62.483 1 56.21 ? C7 NAG 702 A 1 HETATM 8 C C8 NAG . . . E 4 9.469 30.362 -61.969 1 51.97 ? C8 NAG 702 A 1 HETATM 9 N N2 NAG . . . E 4 8.378 28.258 -62.423 1 57.78 ? N2 NAG 702 A 1 HETATM 10 O O3 NAG . . . E 4 6.573 27.352 -64.51 1 60.44 ? O3 NAG 702 A 1 HETATM 11 O O4 NAG . . . E 4 5.237 24.842 -63.923 1 57.88 ? O4 NAG 702 A 1 HETATM 12 O O5 NAG . . . E 4 8.429 24.581 -62.132 1 54.72 ? O5 NAG 702 A 1 HETATM 13 O O6 NAG . . . E 4 8.305 22.345 -63.116 1 58.42 ? O6 NAG 702 A 1 HETATM 14 O O7 NAG . . . E 4 10.559 28.467 -62.941 1 50.59 ? O7 NAG 702 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #