data_7LOL # _model_server_result.job_id ULC-2r9XYGBlFtMBsGiYZg _model_server_result.datetime_utc '2024-12-01 10:53:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7LOL # _exptl.entry_id 7LOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.055 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7LOL _cell.length_a 81.746 _cell.length_b 81.746 _cell.length_c 207.436 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -40.873 -70.794113 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 40.873 -70.794113 0 4 'crystal symmetry operation' 16_544 y+1/3,x-1/3,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 40.873 -23.598038 -69.145333 5 'crystal symmetry operation' 17_434 x-y-2/3,-y-4/3,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 -94.39215 -69.145333 6 'crystal symmetry operation' 18_444 -x-2/3,-x+y-1/3,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 -40.873 -23.598038 -69.145333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 126 A HIS 126 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc2 A OD2 ASP 149 A ASP 149 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 A OD1 ASP 149 A ASP 149 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc4 A ND1 HIS 151 A HIS 151 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 A OD2 ASP 153 A ASP 153 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc6 A OD2 ASP 230 A ASP 230 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc7 A OD2 ASP 230 A ASP 230 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc8 A OD1 ASP 232 A ASP 232 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc9 A OD2 ASP 232 A ASP 232 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc10 A OE1 GLN 281 A GLN 281 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc11 A OE1 GLN 281 A GLN 281 1_555 E MN MN . A MN 404 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc12 C MN MN . A MN 402 1_555 F O URE . A URE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc13 C MN MN . A MN 402 1_555 H O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc14 D MN MN . A MN 403 1_555 H O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc15 E MN MN . A MN 404 1_555 H O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc16 E MN MN . A MN 404 1_555 H O HOH . A HOH 614 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C H4 N2 O' _chem_comp.formula_weight 60.055 _chem_comp.id URE _chem_comp.mon_nstd_flag . _chem_comp.name UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O URE doub 399 n n C N1 URE sing 400 n n C N2 URE sing 401 n n N1 HN11 URE sing 402 n n N1 HN12 URE sing 403 n n N2 HN21 URE sing 404 n n N2 HN22 URE sing 405 n n # _atom_sites.entry_id 7LOL _atom_sites.fract_transf_matrix[1][1] 0.012233 _atom_sites.fract_transf_matrix[1][2] 0.007063 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AG2 A 1 401 1 AG2 AG2 . C 3 MN A 1 402 2 MN MN . D 3 MN A 1 403 3 MN MN . E 3 MN A 1 404 4 MN MN . F 4 URE A 1 405 5 URE URE . G 5 TRS A 1 406 501 TRS TRS . H 6 HOH A 1 501 148 HOH HOH . H 6 HOH A 2 502 66 HOH HOH . H 6 HOH A 3 503 53 HOH HOH . H 6 HOH A 4 504 33 HOH HOH . H 6 HOH A 5 505 119 HOH HOH . H 6 HOH A 6 506 115 HOH HOH . H 6 HOH A 7 507 25 HOH HOH . H 6 HOH A 8 508 129 HOH HOH . H 6 HOH A 9 509 134 HOH HOH . H 6 HOH A 10 510 2 HOH HOH . H 6 HOH A 11 511 32 HOH HOH . H 6 HOH A 12 512 16 HOH HOH . H 6 HOH A 13 513 138 HOH HOH . H 6 HOH A 14 514 9 HOH HOH . H 6 HOH A 15 515 3 HOH HOH . H 6 HOH A 16 516 15 HOH HOH . H 6 HOH A 17 517 142 HOH HOH . H 6 HOH A 18 518 43 HOH HOH . H 6 HOH A 19 519 55 HOH HOH . H 6 HOH A 20 520 82 HOH HOH . H 6 HOH A 21 521 84 HOH HOH . H 6 HOH A 22 522 117 HOH HOH . H 6 HOH A 23 523 74 HOH HOH . H 6 HOH A 24 524 75 HOH HOH . H 6 HOH A 25 525 28 HOH HOH . H 6 HOH A 26 526 146 HOH HOH . H 6 HOH A 27 527 92 HOH HOH . H 6 HOH A 28 528 110 HOH HOH . H 6 HOH A 29 529 59 HOH HOH . H 6 HOH A 30 530 21 HOH HOH . H 6 HOH A 31 531 8 HOH HOH . H 6 HOH A 32 532 26 HOH HOH . H 6 HOH A 33 533 112 HOH HOH . H 6 HOH A 34 534 76 HOH HOH . H 6 HOH A 35 535 19 HOH HOH . H 6 HOH A 36 536 102 HOH HOH . H 6 HOH A 37 537 61 HOH HOH . H 6 HOH A 38 538 1 HOH HOH . H 6 HOH A 39 539 86 HOH HOH . H 6 HOH A 40 540 18 HOH HOH . H 6 HOH A 41 541 46 HOH HOH . H 6 HOH A 42 542 127 HOH HOH . H 6 HOH A 43 543 85 HOH HOH . H 6 HOH A 44 544 30 HOH HOH . H 6 HOH A 45 545 73 HOH HOH . H 6 HOH A 46 546 94 HOH HOH . H 6 HOH A 47 547 95 HOH HOH . H 6 HOH A 48 548 54 HOH HOH . H 6 HOH A 49 549 38 HOH HOH . H 6 HOH A 50 550 6 HOH HOH . H 6 HOH A 51 551 12 HOH HOH . H 6 HOH A 52 552 123 HOH HOH . H 6 HOH A 53 553 60 HOH HOH . H 6 HOH A 54 554 89 HOH HOH . H 6 HOH A 55 555 83 HOH HOH . H 6 HOH A 56 556 71 HOH HOH . H 6 HOH A 57 557 11 HOH HOH . H 6 HOH A 58 558 78 HOH HOH . H 6 HOH A 59 559 48 HOH HOH . H 6 HOH A 60 560 36 HOH HOH . H 6 HOH A 61 561 39 HOH HOH . H 6 HOH A 62 562 31 HOH HOH . H 6 HOH A 63 563 62 HOH HOH . H 6 HOH A 64 564 41 HOH HOH . H 6 HOH A 65 565 47 HOH HOH . H 6 HOH A 66 566 81 HOH HOH . H 6 HOH A 67 567 140 HOH HOH . H 6 HOH A 68 568 13 HOH HOH . H 6 HOH A 69 569 79 HOH HOH . H 6 HOH A 70 570 14 HOH HOH . H 6 HOH A 71 571 111 HOH HOH . H 6 HOH A 72 572 113 HOH HOH . H 6 HOH A 73 573 56 HOH HOH . H 6 HOH A 74 574 5 HOH HOH . H 6 HOH A 75 575 35 HOH HOH . H 6 HOH A 76 576 37 HOH HOH . H 6 HOH A 77 577 67 HOH HOH . H 6 HOH A 78 578 101 HOH HOH . H 6 HOH A 79 579 90 HOH HOH . H 6 HOH A 80 580 97 HOH HOH . H 6 HOH A 81 581 27 HOH HOH . H 6 HOH A 82 582 20 HOH HOH . H 6 HOH A 83 583 4 HOH HOH . H 6 HOH A 84 584 24 HOH HOH . H 6 HOH A 85 585 114 HOH HOH . H 6 HOH A 86 586 52 HOH HOH . H 6 HOH A 87 587 96 HOH HOH . H 6 HOH A 88 588 34 HOH HOH . H 6 HOH A 89 589 63 HOH HOH . H 6 HOH A 90 590 141 HOH HOH . H 6 HOH A 91 591 23 HOH HOH . H 6 HOH A 92 592 126 HOH HOH . H 6 HOH A 93 593 22 HOH HOH . H 6 HOH A 94 594 105 HOH HOH . H 6 HOH A 95 595 121 HOH HOH . H 6 HOH A 96 596 103 HOH HOH . H 6 HOH A 97 597 109 HOH HOH . H 6 HOH A 98 598 7 HOH HOH . H 6 HOH A 99 599 130 HOH HOH . H 6 HOH A 100 600 120 HOH HOH . H 6 HOH A 101 601 69 HOH HOH . H 6 HOH A 102 602 143 HOH HOH . H 6 HOH A 103 603 80 HOH HOH . H 6 HOH A 104 604 10 HOH HOH . H 6 HOH A 105 605 104 HOH HOH . H 6 HOH A 106 606 29 HOH HOH . H 6 HOH A 107 607 64 HOH HOH . H 6 HOH A 108 608 42 HOH HOH . H 6 HOH A 109 609 137 HOH HOH . H 6 HOH A 110 610 51 HOH HOH . H 6 HOH A 111 611 40 HOH HOH . H 6 HOH A 112 612 65 HOH HOH . H 6 HOH A 113 613 99 HOH HOH . H 6 HOH A 114 614 44 HOH HOH . H 6 HOH A 115 615 88 HOH HOH . H 6 HOH A 116 616 49 HOH HOH . H 6 HOH A 117 617 122 HOH HOH . H 6 HOH A 118 618 17 HOH HOH . H 6 HOH A 119 619 139 HOH HOH . H 6 HOH A 120 620 50 HOH HOH . H 6 HOH A 121 621 131 HOH HOH . H 6 HOH A 122 622 107 HOH HOH . H 6 HOH A 123 623 135 HOH HOH . H 6 HOH A 124 624 57 HOH HOH . H 6 HOH A 125 625 72 HOH HOH . H 6 HOH A 126 626 136 HOH HOH . H 6 HOH A 127 627 68 HOH HOH . H 6 HOH A 128 628 91 HOH HOH . H 6 HOH A 129 629 118 HOH HOH . H 6 HOH A 130 630 149 HOH HOH . H 6 HOH A 131 631 116 HOH HOH . H 6 HOH A 132 632 45 HOH HOH . H 6 HOH A 133 633 124 HOH HOH . H 6 HOH A 134 634 147 HOH HOH . H 6 HOH A 135 635 128 HOH HOH . H 6 HOH A 136 636 133 HOH HOH . H 6 HOH A 137 637 144 HOH HOH . H 6 HOH A 138 638 87 HOH HOH . H 6 HOH A 139 639 100 HOH HOH . H 6 HOH A 140 640 93 HOH HOH . H 6 HOH A 141 641 125 HOH HOH . H 6 HOH A 142 642 77 HOH HOH . H 6 HOH A 143 643 108 HOH HOH . H 6 HOH A 144 644 132 HOH HOH . H 6 HOH A 145 645 58 HOH HOH . H 6 HOH A 146 646 70 HOH HOH . H 6 HOH A 147 647 145 HOH HOH . H 6 HOH A 148 648 98 HOH HOH . H 6 HOH A 149 649 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C URE . . . F 4 10.109 -29.061 -21.126 1 19.44 ? C URE 405 A 1 HETATM 2 O O URE . . . F 4 9.134 -28.467 -21.1 1 33.21 ? O URE 405 A 1 HETATM 3 N N1 URE . . . F 4 11.24 -28.533 -21.009 1 30.72 ? N1 URE 405 A 1 HETATM 4 N N2 URE . . . F 4 10.118 -30.255 -21.389 1 26.99 ? N2 URE 405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #