data_7LOS # _model_server_result.job_id 1gozTWC97m6vNhsTFS34Pg _model_server_result.datetime_utc '2024-11-16 08:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7los # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 7LOS # _exptl.entry_id 7LOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.66 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-[[[(3~{R})-oxolan-3-yl]amino]methyl]thiophen-2-yl]phenyl]ethyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.53 _cell.angle_gamma 90 _cell.entry_id 7LOS _cell.length_a 46.564 _cell.length_b 146.184 _cell.length_c 60.321 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 190 A CYS 189 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A SG CYS 193 A CYS 192 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 A SG CYS 227 A CYS 226 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc4 B SG CYS 190 B CYS 189 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 B SG CYS 193 B CYS 192 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 B SG CYS 225 B CYS 224 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 B SG CYS 227 B CYS 226 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'C28 H34 N4 O2 S' _chem_comp.formula_weight 490.66 _chem_comp.id Y97 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-[[[(3~{R})-oxolan-3-yl]amino]methyl]thiophen-2-yl]phenyl]ethyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 Y97 sing 380 n n C02 N03 Y97 sing 381 n n C02 C18 Y97 sing 382 n n N03 C04 Y97 sing 383 n n C19 C18 Y97 doub 384 n y C19 C20 Y97 sing 385 n y C18 C35 Y97 sing 386 n y O32 C33 Y97 sing 387 n n O32 C31 Y97 sing 388 n n C20 C21 Y97 doub 389 n y C07 C06 Y97 sing 390 n n C04 C05 Y97 sing 391 n n C04 O17 Y97 doub 392 n n C33 C29 Y97 sing 393 n n C13 N14 Y97 sing 394 n n C13 C12 Y97 sing 395 n n C35 C22 Y97 doub 396 n y C06 C05 Y97 doub 397 n y C06 C08 Y97 sing 398 n y C05 C16 Y97 sing 399 n y C31 C30 Y97 sing 400 n n N14 C15 Y97 sing 401 n n C08 C09 Y97 doub 402 n y C21 C22 Y97 sing 403 n y C12 C15 Y97 sing 404 n n C12 N11 Y97 sing 405 n n C16 C10 Y97 doub 406 n y C22 C23 Y97 sing 407 n n C09 C10 Y97 sing 408 n y C10 N11 Y97 sing 409 n n C29 C30 Y97 sing 410 n n C29 N28 Y97 sing 411 n n S34 C23 Y97 sing 412 n y S34 C26 Y97 sing 413 n y C23 C24 Y97 doub 414 n y N28 C27 Y97 sing 415 n n C24 C25 Y97 sing 416 n y C26 C27 Y97 sing 417 n n C26 C25 Y97 doub 418 n y C01 H1 Y97 sing 419 n n C01 H2 Y97 sing 420 n n C01 H3 Y97 sing 421 n n C02 H4 Y97 sing 422 n n C07 H5 Y97 sing 423 n n C07 H6 Y97 sing 424 n n C07 H7 Y97 sing 425 n n C08 H8 Y97 sing 426 n n C09 H9 Y97 sing 427 n n C12 H10 Y97 sing 428 n n C13 H11 Y97 sing 429 n n C13 H12 Y97 sing 430 n n C15 H13 Y97 sing 431 n n C15 H14 Y97 sing 432 n n C16 H15 Y97 sing 433 n n C19 H16 Y97 sing 434 n n C20 H17 Y97 sing 435 n n C21 H18 Y97 sing 436 n n C24 H19 Y97 sing 437 n n C25 H20 Y97 sing 438 n n C27 H21 Y97 sing 439 n n C27 H22 Y97 sing 440 n n C29 H23 Y97 sing 441 n n C33 H24 Y97 sing 442 n n C33 H25 Y97 sing 443 n n N03 H26 Y97 sing 444 n n N11 H27 Y97 sing 445 n n N14 H28 Y97 sing 446 n n N28 H30 Y97 sing 447 n n C30 H32 Y97 sing 448 n n C30 H33 Y97 sing 449 n n C31 H34 Y97 sing 450 n n C31 H35 Y97 sing 451 n n C35 H36 Y97 sing 452 n n # _atom_sites.entry_id 7LOS _atom_sites.fract_transf_matrix[1][1] 0.021476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003605 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 402 ZN ZN . D 3 SO4 A 1 402 501 SO4 SO4 . E 4 Y97 A 1 403 1301 Y97 865 . F 3 SO4 A 1 404 1401 SO4 SO4 . G 3 SO4 A 1 405 1501 SO4 SO4 . H 3 SO4 A 1 406 1601 SO4 SO4 . I 2 ZN B 1 401 402 ZN ZN . J 3 SO4 B 1 402 404 SO4 SO4 . K 3 SO4 B 1 403 901 SO4 SO4 . L 4 Y97 B 1 404 1001 Y97 865 . M 5 CL B 1 405 1 CL CL . N 6 HOH A 1 501 2 HOH HOH . N 6 HOH A 2 502 3 HOH HOH . N 6 HOH A 3 503 14 HOH HOH . N 6 HOH A 4 504 9 HOH HOH . N 6 HOH A 5 505 6 HOH HOH . N 6 HOH A 6 506 7 HOH HOH . N 6 HOH A 7 507 12 HOH HOH . N 6 HOH A 8 508 4 HOH HOH . O 6 HOH B 1 501 10 HOH HOH . O 6 HOH B 2 502 5 HOH HOH . O 6 HOH B 3 503 15 HOH HOH . O 6 HOH B 4 504 8 HOH HOH . O 6 HOH B 5 505 11 HOH HOH . O 6 HOH B 6 506 13 HOH HOH . O 6 HOH B 7 507 1 HOH HOH . O 6 HOH B 8 508 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 Y97 . . . E 4 1.832 12.044 32.128 1 50.37 ? C01 Y97 403 A 1 HETATM 2 C C02 Y97 . . . E 4 1.792 11.758 33.677 1 51.11 ? C02 Y97 403 A 1 HETATM 3 C C04 Y97 . . . E 4 2.005 9.713 35.267 1 50.88 ? C04 Y97 403 A 1 HETATM 4 C C06 Y97 . . . E 4 1.467 7.18 35.505 1 50.48 ? C06 Y97 403 A 1 HETATM 5 C C07 Y97 . . . E 4 0.014 7.482 35.006 1 48.66 ? C07 Y97 403 A 1 HETATM 6 C C08 Y97 . . . E 4 1.888 5.854 35.845 1 53.42 ? C08 Y97 403 A 1 HETATM 7 C C09 Y97 . . . E 4 3.205 5.545 36.293 1 55.45 ? C09 Y97 403 A 1 HETATM 8 C C10 Y97 . . . E 4 4.182 6.559 36.44 1 57.25 ? C10 Y97 403 A 1 HETATM 9 C C12 Y97 . . . E 4 6.725 6.078 36 1 68.47 ? C12 Y97 403 A 1 HETATM 10 C C13 Y97 . . . E 4 7.372 7.398 35.34 1 71.3 ? C13 Y97 403 A 1 HETATM 11 C C15 Y97 . . . E 4 8.168 5.855 36.644 1 73.82 ? C15 Y97 403 A 1 HETATM 12 C C16 Y97 . . . E 4 3.736 7.886 36.088 1 53.8 ? C16 Y97 403 A 1 HETATM 13 O O17 Y97 . . . E 4 1.453 10.4 36.154 1 47.36 ? O17 Y97 403 A 1 HETATM 14 C C18 Y97 . . . E 4 2.771 12.719 34.474 1 49.25 ? C18 Y97 403 A 1 HETATM 15 C C19 Y97 . . . E 4 4.15 12.626 34.256 1 48.92 ? C19 Y97 403 A 1 HETATM 16 C C20 Y97 . . . E 4 5.035 13.448 34.977 1 50.28 ? C20 Y97 403 A 1 HETATM 17 C C21 Y97 . . . E 4 4.529 14.35 35.946 1 50.65 ? C21 Y97 403 A 1 HETATM 18 C C22 Y97 . . . E 4 3.126 14.466 36.228 1 50.31 ? C22 Y97 403 A 1 HETATM 19 C C23 Y97 . . . E 4 2.525 15.443 37.315 1 54.77 ? C23 Y97 403 A 1 HETATM 20 C C24 Y97 . . . E 4 3.004 16.143 38.416 1 58.36 ? C24 Y97 403 A 1 HETATM 21 C C25 Y97 . . . E 4 1.98 16.964 39.18 1 65.42 ? C25 Y97 403 A 1 HETATM 22 C C26 Y97 . . . E 4 0.701 16.865 38.662 1 73.18 ? C26 Y97 403 A 1 HETATM 23 C C27 Y97 . . . E 4 -0.705 17.466 38.982 1 84.35 ? C27 Y97 403 A 1 HETATM 24 C C29 Y97 . . . E 4 -1.089 18.62 36.524 1 107.55 ? C29 Y97 403 A 1 HETATM 25 C C33 Y97 . . . E 4 -2.104 18.712 35.291 1 107 ? C33 Y97 403 A 1 HETATM 26 N N03 Y97 . . . E 4 2.159 10.34 34.001 1 51.66 ? N03 Y97 403 A 1 HETATM 27 C C05 Y97 . . . E 4 2.411 8.207 35.634 1 51.25 ? C05 Y97 403 A 1 HETATM 28 N N11 Y97 . . . E 4 5.577 6.257 36.897 1 61.07 ? N11 Y97 403 A 1 HETATM 29 N N14 Y97 . . . E 4 8.778 6.99 35.798 1 75.07 ? N14 Y97 403 A 1 HETATM 30 N N28 Y97 . . . E 4 -1.574 17.681 37.69 1 102.21 ? N28 Y97 403 A 1 HETATM 31 C C30 Y97 . . . E 4 -0.974 20.118 36.96 1 106.41 ? C30 Y97 403 A 1 HETATM 32 C C31 Y97 . . . E 4 -1.327 20.888 35.683 1 105.8 ? C31 Y97 403 A 1 HETATM 33 O O32 Y97 . . . E 4 -2.044 20.08 34.815 1 106.36 ? O32 Y97 403 A 1 HETATM 34 S S34 Y97 . . . E 4 0.765 15.771 37.251 1 57.73 ? S34 Y97 403 A 1 HETATM 35 C C35 Y97 . . . E 4 2.29 13.616 35.463 1 47.65 ? C35 Y97 403 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #