data_7LOW
#
_model_server_result.job_id            j0pOClV1fDsWXN5_YWYnyQ 
_model_server_result.datetime_utc      '2024-11-06 01:35:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7low 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":405}' 
#
_entry.id    7LOW 
#
_exptl.entry_id    7LOW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7LOW 
_cell.length_a            122.954 
_cell.length_b            122.954 
_cell.length_c            288.087 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LOW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -61.477 -106.481287 -48.0145 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 25 A ASP 16 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc2 A OD2 ASP 280 A ASP 271 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc3 C O3 POP . A POP 401 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc4 C O6 POP . A POP 401 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc5 C O1 POP . A POP 401 1_555 N MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc6 C O5 POP . A POP 401 1_555 N MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc7 D O3 PO4 . A PO4 402 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc8 D O4 PO4 . A PO4 402 1_555 N MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc9 E O2 PO4 . A PO4 403 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc10 E O3 PO4 . A PO4 403 1_555 O MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc11 H MG MG . A MG 406 1_555 S O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc12 H MG MG . A MG 406 1_555 S O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc13 I MG MG . A MG 407 1_555 M O2 POP . B POP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc14 I MG MG . A MG 407 1_555 M O6 POP . B POP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc15 B OD2 ASP 25 B ASP 16 1_555 O MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc16 B OD2 ASP 280 B ASP 271 1_555 N MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc17 M O1 POP . B POP 401 1_555 O MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc18 M O4 POP . B POP 401 1_555 O MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc19 O MG MG . B MG 403 1_555 T O HOH . B HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc20 O MG MG . B MG 403 1_555 T O HOH . B HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7LOW 
_atom_sites.fract_transf_matrix[1][1]    0.008133 
_atom_sites.fract_transf_matrix[1][2]    0.004696 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009391 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 POP A 1 401 1 POP POP . 
D 3 PO4 A 1 402 1 PO4 PO4 . 
E 3 PO4 A 1 403 2 PO4 PO4 . 
F 3 PO4 A 1 404 3 PO4 PO4 . 
G 3 PO4 A 1 405 4 PO4 PO4 . 
H 4 MG A 1 406 1 MG MG . 
I 4 MG A 1 407 4 MG MG . 
J 5 EDO A 1 408 12 EDO EDO . 
K 5 EDO A 1 409 13 EDO EDO . 
L 5 EDO A 1 410 14 EDO EDO . 
M 2 POP B 1 401 2 POP POP . 
N 4 MG B 1 402 2 MG MG . 
O 4 MG B 1 403 3 MG MG . 
P 5 EDO B 1 404 6 EDO EDO . 
Q 5 EDO B 1 405 9 EDO EDO . 
R 5 EDO B 1 406 10 EDO EDO . 
S 6 HOH A 1 501 305 HOH HOH . 
S 6 HOH A 2 502 300 HOH HOH . 
S 6 HOH A 3 503 104 HOH HOH . 
S 6 HOH A 4 504 301 HOH HOH . 
S 6 HOH A 5 505 112 HOH HOH . 
S 6 HOH A 6 506 229 HOH HOH . 
S 6 HOH A 7 507 291 HOH HOH . 
S 6 HOH A 8 508 123 HOH HOH . 
S 6 HOH A 9 509 23 HOH HOH . 
S 6 HOH A 10 510 193 HOH HOH . 
S 6 HOH A 11 511 303 HOH HOH . 
S 6 HOH A 12 512 48 HOH HOH . 
S 6 HOH A 13 513 205 HOH HOH . 
S 6 HOH A 14 514 24 HOH HOH . 
S 6 HOH A 15 515 83 HOH HOH . 
S 6 HOH A 16 516 46 HOH HOH . 
S 6 HOH A 17 517 296 HOH HOH . 
S 6 HOH A 18 518 107 HOH HOH . 
S 6 HOH A 19 519 171 HOH HOH . 
S 6 HOH A 20 520 2 HOH HOH . 
S 6 HOH A 21 521 151 HOH HOH . 
S 6 HOH A 22 522 167 HOH HOH . 
S 6 HOH A 23 523 307 HOH HOH . 
S 6 HOH A 24 524 170 HOH HOH . 
S 6 HOH A 25 525 294 HOH HOH . 
S 6 HOH A 26 526 22 HOH HOH . 
S 6 HOH A 27 527 222 HOH HOH . 
S 6 HOH A 28 528 11 HOH HOH . 
S 6 HOH A 29 529 221 HOH HOH . 
S 6 HOH A 30 530 320 HOH HOH . 
S 6 HOH A 31 531 292 HOH HOH . 
S 6 HOH A 32 532 76 HOH HOH . 
S 6 HOH A 33 533 297 HOH HOH . 
S 6 HOH A 34 534 28 HOH HOH . 
S 6 HOH A 35 535 149 HOH HOH . 
S 6 HOH A 36 536 178 HOH HOH . 
S 6 HOH A 37 537 135 HOH HOH . 
S 6 HOH A 38 538 262 HOH HOH . 
S 6 HOH A 39 539 162 HOH HOH . 
S 6 HOH A 40 540 40 HOH HOH . 
S 6 HOH A 41 541 310 HOH HOH . 
S 6 HOH A 42 542 150 HOH HOH . 
S 6 HOH A 43 543 166 HOH HOH . 
S 6 HOH A 44 544 96 HOH HOH . 
S 6 HOH A 45 545 26 HOH HOH . 
S 6 HOH A 46 546 161 HOH HOH . 
S 6 HOH A 47 547 282 HOH HOH . 
S 6 HOH A 48 548 284 HOH HOH . 
S 6 HOH A 49 549 145 HOH HOH . 
S 6 HOH A 50 550 153 HOH HOH . 
S 6 HOH A 51 551 103 HOH HOH . 
S 6 HOH A 52 552 101 HOH HOH . 
S 6 HOH A 53 553 94 HOH HOH . 
S 6 HOH A 54 554 190 HOH HOH . 
S 6 HOH A 55 555 186 HOH HOH . 
S 6 HOH A 56 556 41 HOH HOH . 
S 6 HOH A 57 557 197 HOH HOH . 
S 6 HOH A 58 558 263 HOH HOH . 
S 6 HOH A 59 559 304 HOH HOH . 
S 6 HOH A 60 560 173 HOH HOH . 
S 6 HOH A 61 561 230 HOH HOH . 
S 6 HOH A 62 562 90 HOH HOH . 
S 6 HOH A 63 563 209 HOH HOH . 
S 6 HOH A 64 564 279 HOH HOH . 
S 6 HOH A 65 565 177 HOH HOH . 
S 6 HOH A 66 566 317 HOH HOH . 
S 6 HOH A 67 567 276 HOH HOH . 
T 6 HOH B 1 501 183 HOH HOH . 
T 6 HOH B 2 502 223 HOH HOH . 
T 6 HOH B 3 503 240 HOH HOH . 
T 6 HOH B 4 504 6 HOH HOH . 
T 6 HOH B 5 505 318 HOH HOH . 
T 6 HOH B 6 506 315 HOH HOH . 
T 6 HOH B 7 507 280 HOH HOH . 
T 6 HOH B 8 508 43 HOH HOH . 
T 6 HOH B 9 509 3 HOH HOH . 
T 6 HOH B 10 510 47 HOH HOH . 
T 6 HOH B 11 511 31 HOH HOH . 
T 6 HOH B 12 512 55 HOH HOH . 
T 6 HOH B 13 513 62 HOH HOH . 
T 6 HOH B 14 514 270 HOH HOH . 
T 6 HOH B 15 515 21 HOH HOH . 
T 6 HOH B 16 516 302 HOH HOH . 
T 6 HOH B 17 517 298 HOH HOH . 
T 6 HOH B 18 518 169 HOH HOH . 
T 6 HOH B 19 519 45 HOH HOH . 
T 6 HOH B 20 520 39 HOH HOH . 
T 6 HOH B 21 521 65 HOH HOH . 
T 6 HOH B 22 522 4 HOH HOH . 
T 6 HOH B 23 523 225 HOH HOH . 
T 6 HOH B 24 524 191 HOH HOH . 
T 6 HOH B 25 525 54 HOH HOH . 
T 6 HOH B 26 526 25 HOH HOH . 
T 6 HOH B 27 527 146 HOH HOH . 
T 6 HOH B 28 528 194 HOH HOH . 
T 6 HOH B 29 529 289 HOH HOH . 
T 6 HOH B 30 530 16 HOH HOH . 
T 6 HOH B 31 531 316 HOH HOH . 
T 6 HOH B 32 532 312 HOH HOH . 
T 6 HOH B 33 533 238 HOH HOH . 
T 6 HOH B 34 534 13 HOH HOH . 
T 6 HOH B 35 535 314 HOH HOH . 
T 6 HOH B 36 536 179 HOH HOH . 
T 6 HOH B 37 537 299 HOH HOH . 
T 6 HOH B 38 538 247 HOH HOH . 
T 6 HOH B 39 539 157 HOH HOH . 
T 6 HOH B 40 540 165 HOH HOH . 
T 6 HOH B 41 541 288 HOH HOH . 
T 6 HOH B 42 542 172 HOH HOH . 
T 6 HOH B 43 543 42 HOH HOH . 
T 6 HOH B 44 544 269 HOH HOH . 
T 6 HOH B 45 545 36 HOH HOH . 
T 6 HOH B 46 546 311 HOH HOH . 
T 6 HOH B 47 547 137 HOH HOH . 
T 6 HOH B 48 548 64 HOH HOH . 
T 6 HOH B 49 549 267 HOH HOH . 
T 6 HOH B 50 550 306 HOH HOH . 
T 6 HOH B 51 551 61 HOH HOH . 
T 6 HOH B 52 552 285 HOH HOH . 
T 6 HOH B 53 553 111 HOH HOH . 
T 6 HOH B 54 554 199 HOH HOH . 
T 6 HOH B 55 555 245 HOH HOH . 
T 6 HOH B 56 556 12 HOH HOH . 
T 6 HOH B 57 557 136 HOH HOH . 
T 6 HOH B 58 558 20 HOH HOH . 
T 6 HOH B 59 559 308 HOH HOH . 
T 6 HOH B 60 560 224 HOH HOH . 
T 6 HOH B 61 561 309 HOH HOH . 
T 6 HOH B 62 562 132 HOH HOH . 
T 6 HOH B 63 563 321 HOH HOH . 
T 6 HOH B 64 564 313 HOH HOH . 
T 6 HOH B 65 565 319 HOH HOH . 
T 6 HOH B 66 566 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . Q 5 -6.735 -65.649 -18.66 1 86.21 ? C1 EDO 405 B 1 
HETATM 2 O O1 EDO . . . Q 5 -7.147 -65.994 -19.988 1 81.42 ? O1 EDO 405 B 1 
HETATM 3 C C2 EDO . . . Q 5 -7.938 -65.716 -17.727 1 90.91 ? C2 EDO 405 B 1 
HETATM 4 O O2 EDO . . . Q 5 -8.917 -64.77 -18.168 1 94.68 ? O2 EDO 405 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#