data_7LP9
#
_model_server_result.job_id            a8DFPptlh9FLBbeULWWvEA 
_model_server_result.datetime_utc      '2024-11-14 06:33:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":903}' 
#
_entry.id    7LP9 
#
_exptl.entry_id    7LP9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LP9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 S N N 
? 6 DA N N 
? 6 IA N N 
? 6 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 643 A GLY 643 1_555 O NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc2 O NA NA . A NA 911 1_555 B O GLY 643 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc3 O NA NA . A NA 911 1_555 C O GLY 643 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc4 O NA NA . A NA 911 1_555 D O GLY 643 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                YFP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 YFP sing 775 n n 
C02 C03 YFP sing 776 n n 
C03 C04 YFP sing 777 n n 
C04 C05 YFP sing 778 n n 
C05 C06 YFP sing 779 n n 
C06 C07 YFP sing 780 n n 
C40 C39 YFP sing 781 n n 
C07 C08 YFP sing 782 n n 
C39 C38 YFP sing 783 n n 
C08 C09 YFP sing 784 n n 
C38 C37 YFP sing 785 n n 
C10 C09 YFP sing 786 n n 
C10 C11 YFP sing 787 n n 
C37 C36 YFP sing 788 n n 
C11 C12 YFP sing 789 n n 
C36 C35 YFP sing 790 n n 
C12 C13 YFP sing 791 n n 
C13 C14 YFP sing 792 n n 
C35 C33 YFP sing 793 n n 
O34 C33 YFP doub 794 n n 
C33 O32 YFP sing 795 n n 
C14 C15 YFP sing 796 n n 
C15 C16 YFP sing 797 n n 
O32 C20 YFP sing 798 n n 
C16 O18 YFP sing 799 n n 
C16 O17 YFP doub 800 n n 
C20 C19 YFP sing 801 n n 
C20 C21 YFP sing 802 n n 
C19 O18 YFP sing 803 n n 
C21 O22 YFP sing 804 n n 
O24 P23 YFP doub 805 n n 
O22 P23 YFP sing 806 n n 
P23 O26 YFP sing 807 n n 
P23 O25 YFP sing 808 n n 
C01 H012 YFP sing 809 n n 
C01 H011 YFP sing 810 n n 
C01 H013 YFP sing 811 n n 
C02 H022 YFP sing 812 n n 
C02 H021 YFP sing 813 n n 
C03 H032 YFP sing 814 n n 
C03 H031 YFP sing 815 n n 
C04 H041 YFP sing 816 n n 
C04 H042 YFP sing 817 n n 
C05 H052 YFP sing 818 n n 
C05 H051 YFP sing 819 n n 
C06 H061 YFP sing 820 n n 
C06 H062 YFP sing 821 n n 
C07 H071 YFP sing 822 n n 
C07 H072 YFP sing 823 n n 
C08 H081 YFP sing 824 n n 
C08 H082 YFP sing 825 n n 
C09 H092 YFP sing 826 n n 
C09 H091 YFP sing 827 n n 
C10 H101 YFP sing 828 n n 
C10 H102 YFP sing 829 n n 
C11 H112 YFP sing 830 n n 
C11 H111 YFP sing 831 n n 
C12 H121 YFP sing 832 n n 
C12 H122 YFP sing 833 n n 
C13 H131 YFP sing 834 n n 
C13 H132 YFP sing 835 n n 
C14 H141 YFP sing 836 n n 
C14 H142 YFP sing 837 n n 
C15 H151 YFP sing 838 n n 
C15 H152 YFP sing 839 n n 
C19 H191 YFP sing 840 n n 
C19 H192 YFP sing 841 n n 
C20 H1 YFP sing 842 n n 
C21 H211 YFP sing 843 n n 
C21 H212 YFP sing 844 n n 
C35 H351 YFP sing 845 n n 
C35 H352 YFP sing 846 n n 
C36 H361 YFP sing 847 n n 
C36 H362 YFP sing 848 n n 
C37 H372 YFP sing 849 n n 
C37 H371 YFP sing 850 n n 
C38 H382 YFP sing 851 n n 
C38 H381 YFP sing 852 n n 
C39 H392 YFP sing 853 n n 
C39 H391 YFP sing 854 n n 
C40 H402 YFP sing 855 n n 
C40 H401 YFP sing 856 n n 
O25 H3 YFP sing 857 n n 
O26 C27 YFP sing 858 n n 
C27 C28 YFP sing 859 n n 
C28 C30 YFP sing 860 n n 
C28 O29 YFP sing 861 n n 
C30 O31 YFP sing 862 n n 
C40 C41 YFP sing 863 n n 
C41 C42 YFP sing 864 n n 
C42 C43 YFP doub 865 n n 
C27 H2 YFP sing 866 n n 
C27 H4 YFP sing 867 n n 
C28 H5 YFP sing 868 n n 
C30 H6 YFP sing 869 n n 
C30 H7 YFP sing 870 n n 
O29 H8 YFP sing 871 n n 
O31 H9 YFP sing 872 n n 
C41 H10 YFP sing 873 n n 
C41 H11 YFP sing 874 n n 
C42 H12 YFP sing 875 n n 
C43 H13 YFP sing 876 n n 
C43 C44 YFP sing 877 n n 
C44 H15 YFP sing 878 n n 
C44 H14 YFP sing 879 n n 
C44 C45 YFP sing 880 n n 
C45 C46 YFP sing 881 n n 
C46 C47 YFP sing 882 n n 
C47 C48 YFP sing 883 n n 
C48 C49 YFP sing 884 n n 
C49 C50 YFP sing 885 n n 
C50 C51 YFP sing 886 n n 
C45 H16 YFP sing 887 n n 
C45 H17 YFP sing 888 n n 
C46 H18 YFP sing 889 n n 
C46 H19 YFP sing 890 n n 
C47 H20 YFP sing 891 n n 
C47 H21 YFP sing 892 n n 
C48 H22 YFP sing 893 n n 
C48 H23 YFP sing 894 n n 
C49 H24 YFP sing 895 n n 
C49 H25 YFP sing 896 n n 
C50 H26 YFP sing 897 n n 
C50 H27 YFP sing 898 n n 
C51 H28 YFP sing 899 n n 
C51 H29 YFP sing 900 n n 
C51 H30 YFP sing 901 n n 
#
_atom_sites.entry_id                     7LP9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 T7X A 1 901 901 T7X T7X . 
F 3 LBN A 1 902 902 LBN LBN . 
G 4 6OU A 1 903 903 6OU 6OU . 
H 4 6OU A 1 904 904 6OU 6OU . 
I 4 6OU A 1 905 905 6OU 6OU . 
J 4 6OU A 1 906 906 6OU 6OU . 
K 4 6OU A 1 907 907 6OU 6OU . 
L 4 6OU A 1 908 908 6OU 6OU . 
M 4 6OU A 1 909 909 6OU 6OU . 
N 3 LBN A 1 910 910 LBN LBN . 
O 5 NA A 1 911 911 NA NA . 
P 5 NA A 1 912 912 NA NA . 
Q 4 6OU B 1 901 901 6OU 6OU . 
R 3 LBN B 1 902 902 LBN LBN . 
S 6 YFP B 1 903 903 YFP YFP . 
T 2 T7X B 1 904 904 T7X T7X . 
U 3 LBN B 1 905 905 LBN LBN . 
V 4 6OU B 1 906 906 6OU 6OU . 
W 4 6OU B 1 907 907 6OU 6OU . 
X 4 6OU B 1 908 908 6OU 6OU . 
Y 4 6OU B 1 909 909 6OU 6OU . 
Z 4 6OU B 1 910 910 6OU 6OU . 
AA 4 6OU B 1 911 911 6OU 6OU . 
BA 4 6OU C 1 901 901 6OU 6OU . 
CA 3 LBN C 1 902 902 LBN LBN . 
DA 6 YFP C 1 903 903 YFP YFP . 
EA 2 T7X C 1 904 904 T7X T7X . 
FA 3 LBN C 1 905 905 LBN LBN . 
GA 4 6OU C 1 906 906 6OU 6OU . 
HA 4 6OU C 1 907 907 6OU 6OU . 
IA 6 YFP C 1 908 908 YFP YFP . 
JA 4 6OU C 1 909 909 6OU 6OU . 
KA 4 6OU C 1 910 910 6OU 6OU . 
LA 4 6OU C 1 911 911 6OU 6OU . 
MA 4 6OU C 1 912 912 6OU 6OU . 
NA 4 6OU D 1 901 901 6OU 6OU . 
OA 4 6OU D 1 902 902 6OU 6OU . 
PA 3 LBN D 1 903 903 LBN LBN . 
QA 2 T7X D 1 904 904 T7X T7X . 
RA 3 LBN D 1 905 905 LBN LBN . 
SA 4 6OU D 1 906 906 6OU 6OU . 
TA 4 6OU D 1 907 907 6OU 6OU . 
UA 6 YFP D 1 908 908 YFP YFP . 
VA 4 6OU D 1 909 909 6OU 6OU . 
WA 4 6OU D 1 910 910 6OU 6OU . 
XA 4 6OU D 1 911 911 6OU 6OU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C09 YFP . . . DA 6 110.68 131.652 129.9 1 90.68 ? C09 YFP 903 C 1 
HETATM 2 C C10 YFP . . . DA 6 112.115 131.685 130.539 1 90.68 ? C10 YFP 903 C 1 
HETATM 3 C C11 YFP . . . DA 6 112.402 130.574 131.617 1 90.68 ? C11 YFP 903 C 1 
HETATM 4 C C12 YFP . . . DA 6 113.452 129.485 131.205 1 90.68 ? C12 YFP 903 C 1 
HETATM 5 C C13 YFP . . . DA 6 113.365 128.124 131.991 1 90.68 ? C13 YFP 903 C 1 
HETATM 6 C C14 YFP . . . DA 6 113.356 128.248 133.556 1 90.68 ? C14 YFP 903 C 1 
HETATM 7 C C15 YFP . . . DA 6 114.435 127.38 134.32 1 90.68 ? C15 YFP 903 C 1 
HETATM 8 C C16 YFP . . . DA 6 113.851 126.194 135.125 1 90.68 ? C16 YFP 903 C 1 
HETATM 9 C C19 YFP . . . DA 6 113.37 124.993 137.213 1 90.68 ? C19 YFP 903 C 1 
HETATM 10 C C20 YFP . . . DA 6 111.766 125.157 137.24 1 90.68 ? C20 YFP 903 C 1 
HETATM 11 C C21 YFP . . . DA 6 111.23 125.387 138.702 1 90.68 ? C21 YFP 903 C 1 
HETATM 12 C C33 YFP . . . DA 6 110.453 124.034 135.466 1 90.68 ? C33 YFP 903 C 1 
HETATM 13 C C35 YFP . . . DA 6 108.915 124.268 135.446 1 90.68 ? C35 YFP 903 C 1 
HETATM 14 C C36 YFP . . . DA 6 108.258 124.293 134.013 1 90.68 ? C36 YFP 903 C 1 
HETATM 15 C C37 YFP . . . DA 6 107.049 125.292 133.814 1 90.68 ? C37 YFP 903 C 1 
HETATM 16 C C38 YFP . . . DA 6 107.077 126.145 132.489 1 90.68 ? C38 YFP 903 C 1 
HETATM 17 C C39 YFP . . . DA 6 105.696 126.364 131.763 1 90.68 ? C39 YFP 903 C 1 
HETATM 18 C C40 YFP . . . DA 6 105.722 127.312 130.499 1 90.68 ? C40 YFP 903 C 1 
HETATM 19 O O17 YFP . . . DA 6 113.196 125.308 134.574 1 90.68 ? O17 YFP 903 C 1 
HETATM 20 O O18 YFP . . . DA 6 114.033 126.069 136.499 1 90.68 ? O18 YFP 903 C 1 
HETATM 21 O O22 YFP . . . DA 6 111.467 126.711 139.115 1 90.68 ? O22 YFP 903 C 1 
HETATM 22 O O24 YFP . . . DA 6 112.221 128.341 140.977 1 90.68 -1 O24 YFP 903 C 1 
HETATM 23 O O25 YFP . . . DA 6 114.012 127.352 139.455 1 90.68 ? O25 YFP 903 C 1 
HETATM 24 O O26 YFP . . . DA 6 112.894 125.826 141.255 1 90.68 ? O26 YFP 903 C 1 
HETATM 25 O O32 YFP . . . DA 6 111.195 123.954 136.641 1 90.68 ? O32 YFP 903 C 1 
HETATM 26 O O34 YFP . . . DA 6 111.066 123.911 134.402 1 90.68 ? O34 YFP 903 C 1 
HETATM 27 P P23 YFP . . . DA 6 112.701 127.145 140.189 1 90.68 ? P23 YFP 903 C 1 
HETATM 28 C C27 YFP . . . DA 6 112.541 125.928 142.614 1 90.68 ? C27 YFP 903 C 1 
HETATM 29 C C28 YFP . . . DA 6 113.72 126.555 143.465 1 90.68 ? C28 YFP 903 C 1 
HETATM 30 C C30 YFP . . . DA 6 113.666 126.109 144.983 1 90.68 ? C30 YFP 903 C 1 
HETATM 31 O O29 YFP . . . DA 6 114.931 126.036 142.941 1 90.68 ? O29 YFP 903 C 1 
HETATM 32 O O31 YFP . . . DA 6 114.943 126.374 145.559 1 90.68 ? O31 YFP 903 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#