data_7LP9
#
_model_server_result.job_id            PRkBrVmiR7ZCon0mx01_jA 
_model_server_result.datetime_utc      '2024-11-14 06:47:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"QA","auth_seq_id":904}' 
#
_entry.id    7LP9 
#
_exptl.entry_id    7LP9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              887.128 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Phosphatidylinositol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LP9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 T N N 
? 2 EA N N 
? 2 QA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 643 A GLY 643 1_555 O NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc2 O NA NA . A NA 911 1_555 B O GLY 643 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc3 O NA NA . A NA 911 1_555 C O GLY 643 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc4 O NA NA . A NA 911 1_555 D O GLY 643 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
#
_chem_comp.formula           'C47 H83 O13 P' 
_chem_comp.formula_weight    887.128 
_chem_comp.id                T7X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Phosphatidylinositol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C2 T7X sing 545 n n 
O3 C3 T7X sing 546 n n 
C2 C3 T7X sing 547 n n 
C2 C1 T7X sing 548 n n 
O1 C1 T7X sing 549 n n 
O1 P1 T7X sing 550 n n 
O11 P1 T7X doub 551 n n 
O6 C6 T7X sing 552 n n 
C3 C4 T7X sing 553 n n 
C1 C6 T7X sing 554 n n 
C7 C8 T7X sing 555 n n 
C7 O13 T7X sing 556 n n 
P1 O13 T7X sing 557 n n 
P1 O12 T7X sing 558 n n 
O17 C10 T7X doub 559 n n 
C6 C5 T7X sing 560 n n 
C4 O4 T7X sing 561 n n 
C4 C5 T7X sing 562 n n 
C8 O16 T7X sing 563 n n 
C8 C9 T7X sing 564 n n 
O16 C10 T7X sing 565 n n 
C10 C12 T7X sing 566 n n 
C5 O5 T7X sing 567 n n 
C9 O18 T7X sing 568 n n 
C14 C13 T7X sing 569 n n 
C14 C15 T7X sing 570 n n 
C13 C12 T7X sing 571 n n 
O18 C11 T7X sing 572 n n 
C17 C16 T7X sing 573 n n 
C17 C18 T7X sing 574 n n 
C15 C16 T7X doub 575 z n 
C11 O19 T7X doub 576 n n 
C11 C31 T7X sing 577 n n 
C20 C21 T7X sing 578 n n 
C20 C19 T7X sing 579 n n 
C22 C21 T7X doub 580 e n 
C22 C23 T7X sing 581 n n 
C31 C32 T7X sing 582 n n 
C23 C24 T7X sing 583 n n 
C24 C25 T7X doub 584 e n 
C18 C19 T7X doub 585 z n 
C25 C26 T7X sing 586 n n 
C32 C33 T7X sing 587 n n 
C33 C34 T7X sing 588 n n 
C26 C27 T7X sing 589 n n 
C35 C34 T7X sing 590 n n 
C35 C36 T7X sing 591 n n 
C37 C36 T7X sing 592 n n 
C37 C38 T7X sing 593 n n 
C41 C40 T7X sing 594 n n 
C39 C38 T7X sing 595 n n 
C39 C40 T7X sing 596 n n 
C1 H1 T7X sing 597 n n 
C2 H2 T7X sing 598 n n 
O2 H3 T7X sing 599 n n 
C3 H4 T7X sing 600 n n 
O3 H5 T7X sing 601 n n 
C4 H6 T7X sing 602 n n 
O4 H7 T7X sing 603 n n 
C5 H8 T7X sing 604 n n 
O5 H9 T7X sing 605 n n 
C6 H10 T7X sing 606 n n 
O6 H11 T7X sing 607 n n 
C7 H12 T7X sing 608 n n 
C7 H13 T7X sing 609 n n 
C8 H14 T7X sing 610 n n 
C9 H15 T7X sing 611 n n 
C9 H16 T7X sing 612 n n 
C12 H17 T7X sing 613 n n 
C12 H18 T7X sing 614 n n 
O12 H19 T7X sing 615 n n 
C13 H20 T7X sing 616 n n 
C13 H21 T7X sing 617 n n 
C14 H22 T7X sing 618 n n 
C14 H23 T7X sing 619 n n 
C15 H24 T7X sing 620 n n 
C16 H25 T7X sing 621 n n 
C17 H26 T7X sing 622 n n 
C17 H27 T7X sing 623 n n 
C18 H28 T7X sing 624 n n 
C19 H29 T7X sing 625 n n 
C20 H30 T7X sing 626 n n 
C21 H32 T7X sing 627 n n 
C22 H34 T7X sing 628 n n 
C23 H36 T7X sing 629 n n 
C24 H38 T7X sing 630 n n 
C25 H40 T7X sing 631 n n 
C26 H42 T7X sing 632 n n 
C26 H43 T7X sing 633 n n 
C27 H44 T7X sing 634 n n 
C27 H45 T7X sing 635 n n 
C31 H47 T7X sing 636 n n 
C31 H48 T7X sing 637 n n 
C32 H49 T7X sing 638 n n 
C32 H50 T7X sing 639 n n 
C33 H51 T7X sing 640 n n 
C33 H52 T7X sing 641 n n 
C34 H53 T7X sing 642 n n 
C34 H54 T7X sing 643 n n 
C35 H55 T7X sing 644 n n 
C35 H56 T7X sing 645 n n 
C36 H57 T7X sing 646 n n 
C36 H58 T7X sing 647 n n 
C37 H59 T7X sing 648 n n 
C37 H60 T7X sing 649 n n 
C38 H61 T7X sing 650 n n 
C38 H62 T7X sing 651 n n 
C39 H63 T7X sing 652 n n 
C39 H64 T7X sing 653 n n 
C40 H65 T7X sing 654 n n 
C40 H66 T7X sing 655 n n 
C41 H67 T7X sing 656 n n 
C41 H68 T7X sing 657 n n 
C27 C28 T7X sing 658 n n 
C28 C29 T7X sing 659 n n 
C29 C30 T7X sing 660 n n 
C41 C42 T7X sing 661 n n 
C42 C43 T7X sing 662 n n 
C43 C44 T7X sing 663 n n 
C44 C45 T7X sing 664 n n 
C45 C46 T7X sing 665 n n 
C20 H31 T7X sing 666 n n 
C23 H33 T7X sing 667 n n 
C28 H35 T7X sing 668 n n 
C28 H37 T7X sing 669 n n 
C29 H39 T7X sing 670 n n 
C29 H41 T7X sing 671 n n 
C30 H46 T7X sing 672 n n 
C30 H69 T7X sing 673 n n 
C30 H70 T7X sing 674 n n 
C42 H71 T7X sing 675 n n 
C42 H72 T7X sing 676 n n 
C43 H73 T7X sing 677 n n 
C43 H74 T7X sing 678 n n 
C44 H75 T7X sing 679 n n 
C44 H76 T7X sing 680 n n 
C45 H77 T7X sing 681 n n 
C45 H78 T7X sing 682 n n 
C46 H79 T7X sing 683 n n 
C46 H80 T7X sing 684 n n 
C46 C47 T7X sing 685 n n 
C47 H81 T7X sing 686 n n 
C47 H82 T7X sing 687 n n 
C47 H83 T7X sing 688 n n 
#
_atom_sites.entry_id                     7LP9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 T7X A 1 901 901 T7X T7X . 
F 3 LBN A 1 902 902 LBN LBN . 
G 4 6OU A 1 903 903 6OU 6OU . 
H 4 6OU A 1 904 904 6OU 6OU . 
I 4 6OU A 1 905 905 6OU 6OU . 
J 4 6OU A 1 906 906 6OU 6OU . 
K 4 6OU A 1 907 907 6OU 6OU . 
L 4 6OU A 1 908 908 6OU 6OU . 
M 4 6OU A 1 909 909 6OU 6OU . 
N 3 LBN A 1 910 910 LBN LBN . 
O 5 NA A 1 911 911 NA NA . 
P 5 NA A 1 912 912 NA NA . 
Q 4 6OU B 1 901 901 6OU 6OU . 
R 3 LBN B 1 902 902 LBN LBN . 
S 6 YFP B 1 903 903 YFP YFP . 
T 2 T7X B 1 904 904 T7X T7X . 
U 3 LBN B 1 905 905 LBN LBN . 
V 4 6OU B 1 906 906 6OU 6OU . 
W 4 6OU B 1 907 907 6OU 6OU . 
X 4 6OU B 1 908 908 6OU 6OU . 
Y 4 6OU B 1 909 909 6OU 6OU . 
Z 4 6OU B 1 910 910 6OU 6OU . 
AA 4 6OU B 1 911 911 6OU 6OU . 
BA 4 6OU C 1 901 901 6OU 6OU . 
CA 3 LBN C 1 902 902 LBN LBN . 
DA 6 YFP C 1 903 903 YFP YFP . 
EA 2 T7X C 1 904 904 T7X T7X . 
FA 3 LBN C 1 905 905 LBN LBN . 
GA 4 6OU C 1 906 906 6OU 6OU . 
HA 4 6OU C 1 907 907 6OU 6OU . 
IA 6 YFP C 1 908 908 YFP YFP . 
JA 4 6OU C 1 909 909 6OU 6OU . 
KA 4 6OU C 1 910 910 6OU 6OU . 
LA 4 6OU C 1 911 911 6OU 6OU . 
MA 4 6OU C 1 912 912 6OU 6OU . 
NA 4 6OU D 1 901 901 6OU 6OU . 
OA 4 6OU D 1 902 902 6OU 6OU . 
PA 3 LBN D 1 903 903 LBN LBN . 
QA 2 T7X D 1 904 904 T7X T7X . 
RA 3 LBN D 1 905 905 LBN LBN . 
SA 4 6OU D 1 906 906 6OU 6OU . 
TA 4 6OU D 1 907 907 6OU 6OU . 
UA 6 YFP D 1 908 908 YFP YFP . 
VA 4 6OU D 1 909 909 6OU 6OU . 
WA 4 6OU D 1 910 910 6OU 6OU . 
XA 4 6OU D 1 911 911 6OU 6OU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 T7X . . . QA 2 146.536 163.287 138.107 1 84.24 ? C1 T7X 904 D 1 
HETATM 2 O O1 T7X . . . QA 2 147.131 164.01 137.06 1 84.24 ? O1 T7X 904 D 1 
HETATM 3 P P1 T7X . . . QA 2 146.19 164.403 135.766 1 84.24 ? P1 T7X 904 D 1 
HETATM 4 C C2 T7X . . . QA 2 146.622 164.12 139.398 1 84.24 ? C2 T7X 904 D 1 
HETATM 5 O O2 T7X . . . QA 2 146.491 165.478 139.052 1 84.24 ? O2 T7X 904 D 1 
HETATM 6 C C3 T7X . . . QA 2 147.934 163.962 140.174 1 84.24 ? C3 T7X 904 D 1 
HETATM 7 O O3 T7X . . . QA 2 147.783 164.552 141.441 1 84.24 ? O3 T7X 904 D 1 
HETATM 8 C C4 T7X . . . QA 2 148.312 162.493 140.355 1 84.24 ? C4 T7X 904 D 1 
HETATM 9 O O4 T7X . . . QA 2 149.52 162.403 141.069 1 84.24 ? O4 T7X 904 D 1 
HETATM 10 C C5 T7X . . . QA 2 148.482 161.83 138.991 1 84.24 ? C5 T7X 904 D 1 
HETATM 11 O O5 T7X . . . QA 2 148.833 160.482 139.186 1 84.24 ? O5 T7X 904 D 1 
HETATM 12 C C6 T7X . . . QA 2 147.192 161.894 138.167 1 84.24 ? C6 T7X 904 D 1 
HETATM 13 O O6 T7X . . . QA 2 146.268 160.991 138.725 1 84.24 ? O6 T7X 904 D 1 
HETATM 14 C C7 T7X . . . QA 2 144.846 163.089 133.932 1 84.24 ? C7 T7X 904 D 1 
HETATM 15 C C8 T7X . . . QA 2 144.937 161.85 133.045 1 84.24 ? C8 T7X 904 D 1 
HETATM 16 C C9 T7X . . . QA 2 144.708 162.243 131.587 1 84.24 ? C9 T7X 904 D 1 
HETATM 17 C C10 T7X . . . QA 2 146.437 160.139 132.416 1 84.24 ? C10 T7X 904 D 1 
HETATM 18 C C11 T7X . . . QA 2 143.286 163.429 130.17 1 84.24 ? C11 T7X 904 D 1 
HETATM 19 O O11 T7X . . . QA 2 144.9 165.012 136.25 1 84.24 -1 O11 T7X 904 D 1 
HETATM 20 C C12 T7X . . . QA 2 147.864 159.769 132.022 1 84.24 ? C12 T7X 904 D 1 
HETATM 21 O O12 T7X . . . QA 2 146.91 165.402 134.899 1 84.24 ? O12 T7X 904 D 1 
HETATM 22 C C13 T7X . . . QA 2 147.897 159.291 130.575 1 84.24 ? C13 T7X 904 D 1 
HETATM 23 O O13 T7X . . . QA 2 145.867 163.047 134.888 1 84.24 ? O13 T7X 904 D 1 
HETATM 24 C C14 T7X . . . QA 2 149.288 159.551 130.002 1 84.24 ? C14 T7X 904 D 1 
HETATM 25 C C15 T7X . . . QA 2 149.637 158.468 128.983 1 84.24 ? C15 T7X 904 D 1 
HETATM 26 C C16 T7X . . . QA 2 150.184 158.798 127.831 1 84.24 ? C16 T7X 904 D 1 
HETATM 27 O O16 T7X . . . QA 2 146.208 161.287 133.184 1 84.24 ? O16 T7X 904 D 1 
HETATM 28 O O17 T7X . . . QA 2 145.534 159.454 132.075 1 84.24 ? O17 T7X 904 D 1 
HETATM 29 O O18 T7X . . . QA 2 143.568 163.043 131.482 1 84.24 ? O18 T7X 904 D 1 
HETATM 30 O O19 T7X . . . QA 2 143.589 164.51 129.795 1 84.24 ? O19 T7X 904 D 1 
HETATM 31 C C31 T7X . . . QA 2 142.59 162.458 129.219 1 84.24 ? C31 T7X 904 D 1 
HETATM 32 C C32 T7X . . . QA 2 143.625 161.705 128.385 1 84.24 ? C32 T7X 904 D 1 
HETATM 33 C C33 T7X . . . QA 2 143.322 160.207 128.409 1 84.24 ? C33 T7X 904 D 1 
HETATM 34 C C34 T7X . . . QA 2 144.479 159.411 127.805 1 84.24 ? C34 T7X 904 D 1 
HETATM 35 C C35 T7X . . . QA 2 144.708 159.84 126.357 1 84.24 ? C35 T7X 904 D 1 
HETATM 36 C C36 T7X . . . QA 2 145.67 158.877 125.666 1 84.24 ? C36 T7X 904 D 1 
HETATM 37 C C37 T7X . . . QA 2 146.97 159.599 125.317 1 84.24 ? C37 T7X 904 D 1 
HETATM 38 C C38 T7X . . . QA 2 146.753 160.5 124.103 1 84.24 ? C38 T7X 904 D 1 
HETATM 39 C C39 T7X . . . QA 2 146.916 159.695 122.817 1 84.24 ? C39 T7X 904 D 1 
HETATM 40 C C40 T7X . . . QA 2 146.531 160.572 121.629 1 84.24 ? C40 T7X 904 D 1 
HETATM 41 C C41 T7X . . . QA 2 146.764 159.801 120.332 1 84.24 ? C41 T7X 904 D 1 
HETATM 42 C C42 T7X . . . QA 2 146.928 160.775 119.166 1 84.24 ? C42 T7X 904 D 1 
HETATM 43 C C43 T7X . . . QA 2 148.354 160.685 118.626 1 84.24 ? C43 T7X 904 D 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#