data_7LP9
#
_model_server_result.job_id            1SebDC8a6fDBXgo_TEw9uQ 
_model_server_result.datetime_utc      '2024-11-14 06:25:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":905}' 
#
_entry.id    7LP9 
#
_exptl.entry_id    7LP9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              717.996 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LP9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 Q N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 GA N N 
? 4 HA N N 
? 4 JA N N 
? 4 KA N N 
? 4 LA N N 
? 4 MA N N 
? 4 NA N N 
? 4 OA N N 
? 4 SA N N 
? 4 TA N N 
? 4 VA N N 
? 4 WA N N 
? 4 XA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 643 A GLY 643 1_555 O NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc2 O NA NA . A NA 911 1_555 B O GLY 643 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc3 O NA NA . A NA 911 1_555 C O GLY 643 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc4 O NA NA . A NA 911 1_555 D O GLY 643 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
#
_chem_comp.formula           'C39 H76 N O8 P' 
_chem_comp.formula_weight    717.996 
_chem_comp.id                6OU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 6OU sing 1 n n 
C48 C49 6OU sing 2 n n 
C47 C46 6OU sing 3 n n 
C41 C40 6OU doub 4 z n 
C41 C42 6OU sing 5 n n 
C40 C39 6OU sing 6 n n 
C27 C28 6OU sing 7 n n 
C27 O26 6OU sing 8 n n 
C28 N29 6OU sing 9 n n 
C01 C02 6OU sing 10 n n 
C42 C43 6OU sing 11 n n 
C02 C03 6OU sing 12 n n 
C45 C46 6OU sing 13 n n 
C45 C44 6OU sing 14 n n 
C39 C38 6OU sing 15 n n 
C33 C34 6OU sing 16 n n 
C33 C31 6OU sing 17 n n 
C44 C43 6OU sing 18 n n 
O26 P23 6OU sing 19 n n 
O24 P23 6OU doub 20 n n 
C35 C34 6OU sing 21 n n 
C35 C36 6OU sing 22 n n 
C38 C37 6OU sing 23 n n 
C36 C37 6OU sing 24 n n 
C31 O30 6OU sing 25 n n 
C31 O32 6OU doub 26 n n 
O22 P23 6OU sing 27 n n 
O22 C21 6OU sing 28 n n 
O30 C20 6OU sing 29 n n 
P23 O25 6OU sing 30 n n 
C03 C04 6OU sing 31 n n 
C04 C05 6OU sing 32 n n 
C19 C20 6OU sing 33 n n 
C19 O18 6OU sing 34 n n 
C21 C20 6OU sing 35 n n 
C15 C14 6OU sing 36 n n 
C15 C16 6OU sing 37 n n 
O18 C16 6OU sing 38 n n 
C14 C13 6OU sing 39 n n 
C05 C06 6OU sing 40 n n 
C16 O17 6OU doub 41 n n 
C06 C07 6OU sing 42 n n 
C11 C10 6OU sing 43 n n 
C11 C12 6OU sing 44 n n 
C13 C12 6OU sing 45 n n 
C10 C09 6OU sing 46 n n 
C07 C08 6OU sing 47 n n 
C09 C08 6OU sing 48 n n 
C01 H1 6OU sing 49 n n 
C01 H2 6OU sing 50 n n 
C01 H3 6OU sing 51 n n 
C02 H4 6OU sing 52 n n 
C02 H5 6OU sing 53 n n 
C03 H6 6OU sing 54 n n 
C03 H7 6OU sing 55 n n 
C04 H8 6OU sing 56 n n 
C04 H9 6OU sing 57 n n 
C05 H10 6OU sing 58 n n 
C05 H11 6OU sing 59 n n 
C06 H12 6OU sing 60 n n 
C06 H13 6OU sing 61 n n 
C07 H14 6OU sing 62 n n 
C07 H15 6OU sing 63 n n 
C08 H16 6OU sing 64 n n 
C08 H17 6OU sing 65 n n 
C09 H18 6OU sing 66 n n 
C09 H19 6OU sing 67 n n 
C10 H20 6OU sing 68 n n 
C10 H21 6OU sing 69 n n 
C11 H22 6OU sing 70 n n 
C11 H23 6OU sing 71 n n 
C12 H24 6OU sing 72 n n 
C12 H25 6OU sing 73 n n 
C13 H26 6OU sing 74 n n 
C13 H27 6OU sing 75 n n 
C14 H28 6OU sing 76 n n 
C14 H29 6OU sing 77 n n 
C15 H30 6OU sing 78 n n 
C15 H31 6OU sing 79 n n 
C19 H32 6OU sing 80 n n 
C19 H33 6OU sing 81 n n 
C20 H34 6OU sing 82 n n 
C21 H35 6OU sing 83 n n 
C21 H36 6OU sing 84 n n 
O25 H37 6OU sing 85 n n 
C27 H38 6OU sing 86 n n 
C27 H39 6OU sing 87 n n 
C28 H40 6OU sing 88 n n 
C28 H41 6OU sing 89 n n 
N29 H42 6OU sing 90 n n 
N29 H43 6OU sing 91 n n 
C33 H45 6OU sing 92 n n 
C33 H46 6OU sing 93 n n 
C34 H47 6OU sing 94 n n 
C34 H48 6OU sing 95 n n 
C35 H49 6OU sing 96 n n 
C35 H50 6OU sing 97 n n 
C36 H51 6OU sing 98 n n 
C36 H52 6OU sing 99 n n 
C37 H53 6OU sing 100 n n 
C37 H54 6OU sing 101 n n 
C38 H55 6OU sing 102 n n 
C38 H56 6OU sing 103 n n 
C39 H57 6OU sing 104 n n 
C39 H58 6OU sing 105 n n 
C40 H59 6OU sing 106 n n 
C41 H60 6OU sing 107 n n 
C42 H61 6OU sing 108 n n 
C42 H62 6OU sing 109 n n 
C43 H63 6OU sing 110 n n 
C43 H64 6OU sing 111 n n 
C44 H65 6OU sing 112 n n 
C44 H66 6OU sing 113 n n 
C45 H67 6OU sing 114 n n 
C45 H68 6OU sing 115 n n 
C46 H69 6OU sing 116 n n 
C46 H70 6OU sing 117 n n 
C47 H71 6OU sing 118 n n 
C47 H72 6OU sing 119 n n 
C48 H73 6OU sing 120 n n 
C48 H74 6OU sing 121 n n 
C49 H75 6OU sing 122 n n 
C49 H76 6OU sing 123 n n 
C49 H77 6OU sing 124 n n 
#
_atom_sites.entry_id                     7LP9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 T7X A 1 901 901 T7X T7X . 
F 3 LBN A 1 902 902 LBN LBN . 
G 4 6OU A 1 903 903 6OU 6OU . 
H 4 6OU A 1 904 904 6OU 6OU . 
I 4 6OU A 1 905 905 6OU 6OU . 
J 4 6OU A 1 906 906 6OU 6OU . 
K 4 6OU A 1 907 907 6OU 6OU . 
L 4 6OU A 1 908 908 6OU 6OU . 
M 4 6OU A 1 909 909 6OU 6OU . 
N 3 LBN A 1 910 910 LBN LBN . 
O 5 NA A 1 911 911 NA NA . 
P 5 NA A 1 912 912 NA NA . 
Q 4 6OU B 1 901 901 6OU 6OU . 
R 3 LBN B 1 902 902 LBN LBN . 
S 6 YFP B 1 903 903 YFP YFP . 
T 2 T7X B 1 904 904 T7X T7X . 
U 3 LBN B 1 905 905 LBN LBN . 
V 4 6OU B 1 906 906 6OU 6OU . 
W 4 6OU B 1 907 907 6OU 6OU . 
X 4 6OU B 1 908 908 6OU 6OU . 
Y 4 6OU B 1 909 909 6OU 6OU . 
Z 4 6OU B 1 910 910 6OU 6OU . 
AA 4 6OU B 1 911 911 6OU 6OU . 
BA 4 6OU C 1 901 901 6OU 6OU . 
CA 3 LBN C 1 902 902 LBN LBN . 
DA 6 YFP C 1 903 903 YFP YFP . 
EA 2 T7X C 1 904 904 T7X T7X . 
FA 3 LBN C 1 905 905 LBN LBN . 
GA 4 6OU C 1 906 906 6OU 6OU . 
HA 4 6OU C 1 907 907 6OU 6OU . 
IA 6 YFP C 1 908 908 YFP YFP . 
JA 4 6OU C 1 909 909 6OU 6OU . 
KA 4 6OU C 1 910 910 6OU 6OU . 
LA 4 6OU C 1 911 911 6OU 6OU . 
MA 4 6OU C 1 912 912 6OU 6OU . 
NA 4 6OU D 1 901 901 6OU 6OU . 
OA 4 6OU D 1 902 902 6OU 6OU . 
PA 3 LBN D 1 903 903 LBN LBN . 
QA 2 T7X D 1 904 904 T7X T7X . 
RA 3 LBN D 1 905 905 LBN LBN . 
SA 4 6OU D 1 906 906 6OU 6OU . 
TA 4 6OU D 1 907 907 6OU 6OU . 
UA 6 YFP D 1 908 908 YFP YFP . 
VA 4 6OU D 1 909 909 6OU 6OU . 
WA 4 6OU D 1 910 910 6OU 6OU . 
XA 4 6OU D 1 911 911 6OU 6OU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 6OU . . . I 4 162.198 124.013 128.017 1 101.05 ? C10 6OU 905 A 1 
HETATM 2 C C11 6OU . . . I 4 162.139 123.462 129.477 1 101.05 ? C11 6OU 905 A 1 
HETATM 3 C C12 6OU . . . I 4 161.033 122.4 129.771 1 101.05 ? C12 6OU 905 A 1 
HETATM 4 C C13 6OU . . . I 4 161.428 121.191 130.665 1 101.05 ? C13 6OU 905 A 1 
HETATM 5 C C14 6OU . . . I 4 160.239 120.29 131.158 1 101.05 ? C14 6OU 905 A 1 
HETATM 6 C C15 6OU . . . I 4 159.083 121.033 131.907 1 101.05 ? C15 6OU 905 A 1 
HETATM 7 C C16 6OU . . . I 4 158.371 120.167 132.979 1 101.05 ? C16 6OU 905 A 1 
HETATM 8 O O17 6OU . . . I 4 158.674 119.037 133.22 1 101.05 ? O17 6OU 905 A 1 
HETATM 9 O O18 6OU . . . I 4 157.33 120.782 133.656 1 101.05 ? O18 6OU 905 A 1 
HETATM 10 C C19 6OU . . . I 4 157.428 120.82 135.095 1 101.05 ? C19 6OU 905 A 1 
HETATM 11 C C20 6OU . . . I 4 156.039 121.036 135.797 1 101.05 ? C20 6OU 905 A 1 
HETATM 12 C C21 6OU . . . I 4 156.102 120.8 137.353 1 101.05 ? C21 6OU 905 A 1 
HETATM 13 O O22 6OU . . . I 4 156.217 122.003 138.025 1 101.05 ? O22 6OU 905 A 1 
HETATM 14 P P23 6OU . . . I 4 154.877 122.571 139.027 1 101.05 ? P23 6OU 905 A 1 
HETATM 15 O O24 6OU . . . I 4 154.808 121.655 140.191 1 101.05 ? O24 6OU 905 A 1 
HETATM 16 O O25 6OU . . . I 4 153.744 122.819 138.089 1 101.05 -1 O25 6OU 905 A 1 
HETATM 17 O O26 6OU . . . I 4 155.367 124.116 139.628 1 101.05 ? O26 6OU 905 A 1 
HETATM 18 O O30 6OU . . . I 4 155.088 120.113 135.207 1 101.05 ? O30 6OU 905 A 1 
HETATM 19 C C31 6OU . . . I 4 154.021 120.63 134.481 1 101.05 ? C31 6OU 905 A 1 
HETATM 20 O O32 6OU . . . I 4 153.569 121.702 134.723 1 101.05 ? O32 6OU 905 A 1 
HETATM 21 C C33 6OU . . . I 4 153.458 119.733 133.349 1 101.05 ? C33 6OU 905 A 1 
HETATM 22 C C34 6OU . . . I 4 154.159 119.969 131.97 1 101.05 ? C34 6OU 905 A 1 
HETATM 23 C C35 6OU . . . I 4 154.022 118.827 130.909 1 101.05 ? C35 6OU 905 A 1 
HETATM 24 C C36 6OU . . . I 4 154.404 119.213 129.441 1 101.05 ? C36 6OU 905 A 1 
HETATM 25 C C37 6OU . . . I 4 154.884 118.061 128.511 1 101.05 ? C37 6OU 905 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           25 
#